mRNA_F-serratus_M_contig116.1313.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1313.1
Unique NamemRNA_F-serratus_M_contig116.1313.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig116.1313.1 vs. uniprot
Match: D7G5J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J8_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 1.130e-66
Identity = 100/191 (52.36%), Postives = 133/191 (69.63%), Query Frame = 3 
Query:    3 LRYFRHIEVFMTTVSEVVLEQGMQPPLFHIFTETALPCPDPETGLFPEFPMWPVELDQAKACSAVETPADCQDEKLDQENCVADRSGIFHLRDKAAALHLNPDIRNALSCMIKSDGIVMGCSTFGQIAGILSNGISFFSMGCQGDMTGPKSRMTPGLAISERGHRWVPVRGSWFDPALYSTDILRAAIEQL 575
            L+YF ++E+ M TV++   E+G+  PLFH+F+ET  PCP   TGLF EFP+WPVELD+ + C A  TP DC  EK     C   R+GIF +RDK+  LH+  D++N +SCMI++DG++MGCSTFGQIAG+L+ GIS FS  C G+ T  + R  P LAI+E+GH WVP+ GSW DP L S  I  AA++ L
Sbjct:   12 LQYFHNVELIMETVADEFRERGLPEPLFHVFSETLSPCPSTVTGLFDEFPIWPVELDKIEECLAAATPIDCP-EKQAGTFCTPKRAGIFRIRDKSIVLHVGSDVQNEMSCMIQADGVLMGCSTFGQIAGLLTRGISLFSTRCSGEATPHQYRSIPPLAIAEKGHLWVPIEGSWHDPVLTSRSIFSAALDTL 201
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BLAST of mRNA_F-serratus_M_contig116.1313.1 vs. uniprot
Match: A0A6H5JW68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW68_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 2.500e-55
Identity = 88/189 (46.56%), Postives = 120/189 (63.49%), Query Frame = 3 
Query:    9 YFRHIEVFMTTVSEVVLEQGMQPPLFHIFTETALPCPDPETGLFPEFPMWPVELDQAKACSAVETPADCQDEKLDQENCVADRSGIFHLRDKAAALHLNPDIRNALSCMIKSDGIVMGCSTFGQIAGILSNGISFFSMGCQGDMTGPKSRMTPGLAISERGHRWVPVRGSWFDPALYSTDILRAAIEQL 575
            YF ++E FM TV+   + +G   P+FHIF+ET   CP  E G F EFP WPVE+DQ   C    TP +C ++     +C   RSGIF +  +   LH+  D++N LSCM  ++G++MGCSTFGQ+AG+LS GI FFS  C G  T  + ++ P +AI+ RGH WVPV GSW DP + S  IL A+++ L
Sbjct:   97 YFDYLEDFMETVASAAIARGQDHPVFHIFSETHSRCPSAENGAFEEFPKWPVEMDQVSTCMEATTPEECPEKDAGAPSCNPTRSGIFAVDGREMNLHVGLDVQNDLSCMANANGVLMGCSTFGQVAGVLSKGIRFFSTECAGWRTTIQYKLIPPMAIAGRGHMWVPVSGSWHDPVIASESILGASLDLL 285
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BLAST of mRNA_F-serratus_M_contig116.1313.1 vs. uniprot
Match: A0A6H5L814_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L814_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.350e-48
Identity = 85/199 (42.71%), Postives = 118/199 (59.30%), Query Frame = 3 
Query:    9 YFRHIEVFMTTVSEVVLEQGMQPPLFHIFTETALPCPDPETGLFPEFPMWPVELDQAKACSAVETPADCQDEKLD-------QENCVADRSGIFHLRDKAAALHLNPDIRNALSCMIKSDGIVMGCSTFGQIAGILSNG-ISFFSMGCQGDMTGPKSRMTPGLAISERGHRWVPVRGSWFDPALYSTDILRAAIEQLTK 581
            YF  +E FM TV++ V+E+    P+FH+F+E   PCP PE   F EFP+WPVE DQ     ++       +EK+        ++   A R G F +  +   LHL  +   ALSCM+ +DG++MGCSTFGQ+AG+L+   ISFFS  C G     +S+M P LA++ERG  WVP+ GSW DP L +  I  AA++ L K
Sbjct:   48 YFSLLEDFMATVTQAVVEREQAAPMFHVFSEALYPCPSPENATFTEFPLWPVERDQVDLNVSLHRLFSLSNEKVSVCLRNAAEQGAPASRKGTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDRISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHIFSAALDALLK 246
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BLAST of mRNA_F-serratus_M_contig116.1313.1 vs. uniprot
Match: A0A6H5JXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM8_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.360e-47
Identity = 78/179 (43.58%), Postives = 110/179 (61.45%), Query Frame = 3 
Query:   33 MTTVSEVVLEQGMQPPLFHIFTETALPCPDPETGLFPEFPMWPVELDQAKACSAVETPADCQDEKLDQENCVADRSGIFHLRDKAAALHLNPDIRNALSCMIKSDGIVMGCSTFGQIAGILSNGISFFSMGCQGDMTGPKSRMTPGLAISERGHRWVPVRGSWFDPALYSTDILRAAIE 569
            M  +++ V   G + PLFHIF+ET LPCP  E G+FPEFP W V  D+ + C +   P DC +++   + C    +GIF +  +    ++  ++  +L  MI +D +VMGCS FGQ+AGILS GI  FS GC+G+MT  +++M P  AI+E G  WVP+ GSW DP L +  I R A E
Sbjct:    1 MKVIAKEVHGLGQRTPLFHIFSETELPCPSLEDGVFPEFPEWAVAPDEIRECHSARPPDDCPEKQAGGDFCYPHHTGIFRVPGEPIIFNVGGNVVQSLMSMISADAVVMGCSAFGQLAGILSKGIKLFSTGCEGNMTWEQNKMAPLFAIAELGELWVPLEGSWADPTLTNVGIFRKAFE 179
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BLAST of mRNA_F-serratus_M_contig116.1313.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.450e-43
Identity = 82/192 (42.71%), Postives = 114/192 (59.38%), Query Frame = 3 
Query:    9 YFRHIEVFMTTVSEVVLEQGMQPPLFHIFTETALPCPDPETGLFPEFPMWPVELDQAKACSAVETPADCQDEKLDQENCVADRSGIFHLRDKAAALHLNPDIRNALSCMIKSDGIVMGCSTFGQIAGILS-NGISFFSMGCQGDMTGPKSRMTPGLAISERGHRWVPVRGSWFDPALYSTDILRAAIEQLTK 581
            YF  +E FM TV++ V+E+    P+FH+F+E   PCP PE   F EFP WPVE DQ   C               +++  A R   F +  +   LHL  +   ALSCM+ +DG++MGCSTFGQ+AG+L+ +GISFFS  C G     +S+M P LA++ERG  WVP+ GSW DP L +  +  A +++L K
Sbjct:  206 YFSLLEGFMATVTQAVVEREQAAPMFHVFSEALYPCPFPENATFTEFPFWPVERDQVSVCPR----------NAAEQDGPASRPDTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHVFSAVLDELLK 387
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5J8_ECTSI1.130e-6652.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW68_9PHAE2.500e-5546.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L814_9PHAE5.350e-4842.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXM8_9PHAE1.360e-4743.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRT1_ECTSI2.450e-4342.71Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:354889..355895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue1.6e-36
Seed eggNOG ortholog2880.D7FRT1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size719
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1313.1prot_F-serratus_M_contig116.1313.1Fucus serratus malepolypeptideF-serratus_M_contig116 354921..355778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.8810499-UTR-F-serratus_M_contig116:354888..3549201622929057.8810499-UTR-F-serratus_M_contig116:354888..354920Fucus serratus maleUTRF-serratus_M_contig116 354889..354920 +
1690962685.7819405-UTR-F-serratus_M_contig116:354888..3549201690962685.7819405-UTR-F-serratus_M_contig116:354888..354920Fucus serratus maleUTRF-serratus_M_contig116 354889..354920 +
1622929057.9203374-UTR-F-serratus_M_contig116:355778..3558951622929057.9203374-UTR-F-serratus_M_contig116:355778..355895Fucus serratus maleUTRF-serratus_M_contig116 355779..355895 +
1690962685.8287418-UTR-F-serratus_M_contig116:355778..3558951690962685.8287418-UTR-F-serratus_M_contig116:355778..355895Fucus serratus maleUTRF-serratus_M_contig116 355779..355895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.8970983-CDS-F-serratus_M_contig116:354920..3550641622929057.8970983-CDS-F-serratus_M_contig116:354920..355064Fucus serratus maleCDSF-serratus_M_contig116 354921..355064 +
1690962685.7936575-CDS-F-serratus_M_contig116:354920..3550641690962685.7936575-CDS-F-serratus_M_contig116:354920..355064Fucus serratus maleCDSF-serratus_M_contig116 354921..355064 +
1622929057.9080203-CDS-F-serratus_M_contig116:355352..3557781622929057.9080203-CDS-F-serratus_M_contig116:355352..355778Fucus serratus maleCDSF-serratus_M_contig116 355353..355778 +
1690962685.8080115-CDS-F-serratus_M_contig116:355352..3557781690962685.8080115-CDS-F-serratus_M_contig116:355352..355778Fucus serratus maleCDSF-serratus_M_contig116 355353..355778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1313.1

>prot_F-serratus_M_contig116.1313.1 ID=prot_F-serratus_M_contig116.1313.1|Name=mRNA_F-serratus_M_contig116.1313.1|organism=Fucus serratus male|type=polypeptide|length=190bp
MTTVSEVVLEQGMQPPLFHIFTETALPCPDPETGLFPEFPMWPVELDQAK
ACSAVETPADCQDEKLDQENCVADRSGIFHLRDKAAALHLNPDIRNALSC
MIKSDGIVMGCSTFGQIAGILSNGISFFSMGCQGDMTGPKSRMTPGLAIS
ERGHRWVPVRGSWFDPALYSTDILRAAIEQLTKGGGALR*
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mRNA from alignment at F-serratus_M_contig116:354889..355895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1313.1 ID=mRNA_F-serratus_M_contig116.1313.1|Name=mRNA_F-serratus_M_contig116.1313.1|organism=Fucus serratus male|type=mRNA|length=1007bp|location=Sequence derived from alignment at F-serratus_M_contig116:354889..355895+ (Fucus serratus male)
AACTCAGGTACTTCAGGCATATCGAGGTATTCATGACCACAGTCAGTGAG
GTGGTGCTGGAGCAAGGAATGCAGCCACCGTTGTTCCACATCTTCACAGA
GACCGCTCTCCCTTGCCCAGATCCGGAAACGGGTCTTTTCCCAGAGTTTC
CAATGTGGCCAGTCGAGCTCGACCAGGTTCGTCACGTTAGTGCAGTATTG
TACCGGTACACCAGTTCTAATGTCTACAATTAAATGTGCCATAGTAGTAC
CAGCACGACCGCGTATGTACTTAAATGTTTCATCTGCTATTTCCACAGCT
TTTGATGACGAAAGACTGCGATATGGCGAGCGATGCACTACTATTCTGTG
TACTTGCACGGTAACTAATAAATTTTGTATAAGCCCCCCCTTGTGCTTCG
TGCTACGTACGGGGAACAATGTTCGACAACGTCTTTGGATCGGACCGGTG
CTCCTGCGATGCAGGCCAAAGCATGTTCAGCGGTCGAGACGCCGGCAGAC
TGCCAGGACGAGAAGCTGGACCAGGAAAATTGTGTTGCCGACCGATCTGG
AATATTTCATCTCCGAGATAAGGCTGCCGCCTTGCACTTGAATCCGGACA
TACGTAATGCCTTGTCGTGCATGATCAAGTCGGACGGGATTGTAATGGGA
TGCAGCACGTTTGGCCAAATTGCGGGAATACTCTCCAATGGAATCTCATT
TTTCTCGATGGGGTGTCAGGGAGATATGACGGGACCCAAGTCTAGGATGA
CCCCTGGCCTAGCTATTTCAGAAAGGGGGCACCGGTGGGTACCTGTCAGG
GGTTCATGGTTTGACCCGGCACTCTACAGTACCGATATTCTCCGTGCCGC
AATCGAACAACTCACCAAGGGGGGCGGGGCCTTGAGGTGAACGTACTACA
CAAGGTTATGTGACGCCACAGGGCACTTGGACGTTCTTCAAAGCTGCGAA
TCCTCACAAGTCAGGTGCACCGAACTAATTTGAGCGTCTGCCCGTGACAA
ATCACTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:354889..355895+

>mRNA_F-serratus_M_contig116.1313.1 ID=mRNA_F-serratus_M_contig116.1313.1|Name=mRNA_F-serratus_M_contig116.1313.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig116:354889..355895+ (Fucus serratus male)
ATGACCACAGTCAGTGAGGTGGTGCTGGAGCAAGGAATGCAGCCACCGTT
GTTCCACATCTTCACAGAGACCGCTCTCCCTTGCCCAGATCCGGAAACGG
GTCTTTTCCCAGAGTTTCCAATGTGGCCAGTCGAGCTCGACCAGATGACC
ACAGTCAGTGAGGTGGTGCTGGAGCAAGGAATGCAGCCACCGTTGTTCCA
CATCTTCACAGAGACCGCTCTCCCTTGCCCAGATCCGGAAACGGGTCTTT
TCCCAGAGTTTCCAATGTGGCCAGTCGAGCTCGACCAGGCCAAAGCATGT
TCAGCGGTCGAGACGCCGGCAGACTGCCAGGACGAGAAGCTGGACCAGGA
AAATTGTGTTGCCGACCGATCTGGAATATTTCATCTCCGAGATAAGGCTG
CCGCCTTGCACTTGAATCCGGACATACGTAATGCCTTGTCGTGCATGATC
AAGTCGGACGGGATTGTAATGGGATGCAGCACGTTTGGCCAAATTGCGGG
AATACTCTCCAATGGAATCTCATTTTTCTCGATGGGGTGTCAGGGAGATA
TGACGGGACCCAAGTCTAGGATGACCCCTGGCCTAGCTATTTCAGAAAGG
GGGCACCGGTGGGTACCTGTCAGGGGTTCATGGTTTGACCCGGCACTCTA
CAGTACCGATATTCTCCGTGCCGCAATCGAACAACTCACCAAGGGGGGCG
GGGCCTTGAGGTGAGCCAAAGCATGTTCAGCGGTCGAGACGCCGGCAGAC
TGCCAGGACGAGAAGCTGGACCAGGAAAATTGTGTTGCCGACCGATCTGG
AATATTTCATCTCCGAGATAAGGCTGCCGCCTTGCACTTGAATCCGGACA
TACGTAATGCCTTGTCGTGCATGATCAAGTCGGACGGGATTGTAATGGGA
TGCAGCACGTTTGGCCAAATTGCGGGAATACTCTCCAATGGAATCTCATT
TTTCTCGATGGGGTGTCAGGGAGATATGACGGGACCCAAGTCTAGGATGA
CCCCTGGCCTAGCTATTTCAGAAAGGGGGCACCGGTGGGTACCTGTCAGG
GGTTCATGGTTTGACCCGGCACTCTACAGTACCGATATTCTCCGTGCCGC
AATCGAACAACTCACCAAGGGGGGCGGGGCCTTGAGGTGA
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