mRNA_F-serratus_M_contig1156.1293.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1156.1293.1
Unique NamemRNA_F-serratus_M_contig1156.1293.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A453LBP4_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LBP4_AEGTS)

HSP 1 Score: 169 bits (427), Expect = 2.310e-52
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    1 VWTRKGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSGGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            V  R+GRQG G+ RRQ PP+G PRQH  +H+A DP+ G++GGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   17 VGPRQGRQGAGEGRRQAPPEGAPRQHSGHHEAGDPAAGAAGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 119
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BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A452ZPH7_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZPH7_AEGTS)

HSP 1 Score: 166 bits (421), Expect = 2.360e-51
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 VWTRKGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSGGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            V  R+GRQG  + RRQ PP+G  RQHP +HQA DP+ G++GGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   24 VRPRQGRQGARQGRRQAPPEGAARQHPGHHQAGDPAAGAAGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
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BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A453N2H0_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453N2H0_AEGTS)

HSP 1 Score: 135 bits (340), Expect = 2.470e-39
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 VWTRKGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSGGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            V +R+GR+G G+ R +  P+G+  QHP   +          GGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 VRSRQGREGPGQGRHEASPEGSAGQHPGITKPAIRRLARR-GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 102
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BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A1D2M7F3_ORCCI (Histone H4 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2M7F3_ORCCI)

HSP 1 Score: 135 bits (339), Expect = 2.930e-39
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:   13 KGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSGGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            KG +G+GK        G  R    YHQA  PSF    GGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKG-------GAKRHRKVYHQARHPSFARR-GGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 96
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BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A8C4J7C9_DRONO (TAF domain-containing protein n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4J7C9_DRONO)

HSP 1 Score: 131 bits (330), Expect = 7.650e-37
Identity = 76/131 (58.02%), Postives = 83/131 (63.36%), Query Frame = 1 
Query:    1 VWTRKGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSG----------------------------GGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            VW R+GR+G              RQHP +HQA  P+ GS+                             GGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   47 VWQRQGREGARXXXXXXXXXXXARQHPGHHQAGHPAPGSARRREAHLGKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 177
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BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: F0XXB2_AURAN (Histone H4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXB2_AURAN)

HSP 1 Score: 125 bits (315), Expect = 8.070e-36
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:  124 GGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            GGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   18 GGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 79
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: M8ADQ3_TRIUA (Histone H4 n=1 Tax=Triticum urartu TaxID=4572 RepID=M8ADQ3_TRIUA)

HSP 1 Score: 126 bits (316), Expect = 8.550e-36
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:  121 GGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            GGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   31 GGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 93
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A4C1ZV84_EUMVA (Histone H4 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZV84_EUMVA)

HSP 1 Score: 125 bits (314), Expect = 1.050e-35
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:  121 GGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            GGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 GGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 76
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A816T976_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816T976_BRANA)

HSP 1 Score: 126 bits (316), Expect = 1.550e-35
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   97 CDPSFGSSGGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            C   F +  GGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   43 CAFQFPAKRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 113
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Match: A0A6V7PWM6_ANACO (Histone H4 n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PWM6_ANACO)

HSP 1 Score: 125 bits (315), Expect = 1.580e-35
Identity = 70/99 (70.71%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   13 KGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSGGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            KG +G G R  +  P+G   QHP   +          GGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGRGWG-RGSEAAPEGAAGQHPGITKPAIRRLARR-GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 102
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1156.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453LBP4_AEGTS2.310e-5280.58Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A452ZPH7_AEGTS2.360e-5180.58Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A453N2H0_AEGTS2.470e-3969.90Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A1D2M7F3_ORCCI2.930e-3974.75Histone H4 n=1 Tax=Orchesella cincta TaxID=48709 R... [more]
A0A8C4J7C9_DRONO7.650e-3758.02TAF domain-containing protein n=1 Tax=Dromaius nov... [more]
F0XXB2_AURAN8.070e-36100.00Histone H4 (Fragment) n=1 Tax=Aureococcus anophage... [more]
M8ADQ3_TRIUA8.550e-3696.83Histone H4 n=1 Tax=Triticum urartu TaxID=4572 RepI... [more]
A0A4C1ZV84_EUMVA1.050e-3596.83Histone H4 n=1 Tax=Eumeta variegata TaxID=151549 R... [more]
A0A816T976_BRANA1.550e-3587.32(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A6V7PWM6_ANACO1.580e-3570.71Histone H4 n=1 Tax=Ananas comosus var. bracteatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1156contigF-serratus_M_contig1156:142486..142797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.6
Seed ortholog evalue4.3e-28
Seed eggNOG ortholog4565.Traes_2DL_43F0EFCB2.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs37ZQ9@33090,3GPFG@35493,3II7E@38820,3KZS7@4447,COG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size314
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.5328746-CDS-F-serratus_M_contig1156:142485..1427971622929053.5328746-CDS-F-serratus_M_contig1156:142485..142797Fucus serratus maleCDSF-serratus_M_contig1156 142486..142797 +
1690962683.9486208-CDS-F-serratus_M_contig1156:142485..1427971690962683.9486208-CDS-F-serratus_M_contig1156:142485..142797Fucus serratus maleCDSF-serratus_M_contig1156 142486..142797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1156.1293.1prot_F-serratus_M_contig1156.1293.1Fucus serratus malepolypeptideF-serratus_M_contig1156 142486..142797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1156.1293.1

>prot_F-serratus_M_contig1156.1293.1 ID=prot_F-serratus_M_contig1156.1293.1|Name=mRNA_F-serratus_M_contig1156.1293.1|organism=Fucus serratus male|type=polypeptide|length=104bp
VWTRKGRQGIGKRRRQTPPQGTPRQHPRYHQACDPSFGSSGGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at F-serratus_M_contig1156:142486..142797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1156.1293.1 ID=mRNA_F-serratus_M_contig1156.1293.1|Name=mRNA_F-serratus_M_contig1156.1293.1|organism=Fucus serratus male|type=mRNA|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1156:142486..142797+ (Fucus serratus male)
GTCTGGACGCGGAAAGGGAGGCAAGGGATTGGGAAAAGGCGGCGCCAAAC
GCCACCGCAAGGTACTCCGAGACAACATCCAAGGTATCACCAAGCCTGCG
ATCCGTCGTTTGGCTCGTCGGGGGGGGGTGTGAAGCGAATTTCTGGTCTC
ATCTACGAAGAGACTCGAGGTGTGCTTAAGGTATTCCTCGAGAATGTCAT
CCGCGACTCGGTAACGTACACGGAGCATGCCCGGCGCAAAACAGTGACAG
CAATGGATGTGGTATACGCCCTCAAGCGTCAGGGTCGTACACTTTACGGT
TTCGGTGGATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1156:142486..142797+

>mRNA_F-serratus_M_contig1156.1293.1 ID=mRNA_F-serratus_M_contig1156.1293.1|Name=mRNA_F-serratus_M_contig1156.1293.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig1156:142486..142797+ (Fucus serratus male)
GTCTGGACGCGGAAAGGGAGGCAAGGGATTGGGAAAAGGCGGCGCCAAAC
GCCACCGCAAGGTACTCCGAGACAACATCCAAGGTATCACCAAGCCTGCG
ATCCGTCGTTTGGCTCGTCGGGGGGGGGTGTGAAGCGAATTTCTGGTCTC
ATCTACGAAGAGACTCGAGGTGTGCTTAAGGTATTCCTCGAGAATGTCAT
CCGCGACTCGGTAACGTACACGGAGCATGCCCGGCGCAAAACAGTGACAG
CAATGGATGTGGTATACGCCCTCAAGCGTCAGGGTCGTACACTTTACGGT
TTCGGTGGATAAGTCTGGACGCGGAAAGGGAGGCAAGGGATTGGGAAAAG
GCGGCGCCAAACGCCACCGCAAGGTACTCCGAGACAACATCCAAGGTATC
ACCAAGCCTGCGATCCGTCGTTTGGCTCGTCGGGGGGGGGTGTGAAGCGA
ATTTCTGGTCTCATCTACGAAGAGACTCGAGGTGTGCTTAAGGTATTCCT
CGAGAATGTCATCCGCGACTCGGTAACGTACACGGAGCATGCCCGGCGCA
AAACAGTGACAGCAATGGATGTGGTATACGCCCTCAAGCGTCAGGGTCGT
ACACTTTACGGTTTCGGTGGATAA
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