mRNA_F-serratus_M_contig1156.1283.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1156.1283.1
Unique NamemRNA_F-serratus_M_contig1156.1283.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: A0A453N2H0_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453N2H0_AEGTS)

HSP 1 Score: 163 bits (412), Expect = 2.520e-50
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 VWTRKGRQGIGKRRRQTPPQGTPRQHPRITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            V +R+GR+G G+ R +  P+G+  QHP ITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 VRSRQGREGPGQGRHEASPEGSAGQHPGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 102
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: A0A6V7PWM6_ANACO (Histone H4 n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PWM6_ANACO)

HSP 1 Score: 153 bits (387), Expect = 1.630e-46
Identity = 82/98 (83.67%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   13 KGRQGIGKRRRQTPPQGTPRQHPRITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            KG +G G R  +  P+G   QHP ITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGRGWG-RGSEAAPEGAAGQHPGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 102
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: UPI001BE4C7AC (histone H4-like n=1 Tax=Anopheles merus TaxID=30066 RepID=UPI001BE4C7AC)

HSP 1 Score: 149 bits (377), Expect = 2.060e-44
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    4 WTRKGRQGIGKRRRQTPPQGTPRQHPR--------ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            W RKGR+G+GK        G  ++H +        ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   45 WKRKGRKGLGK--------GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 145
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: UPI00051C03BC (LOW QUALITY PROTEIN: histone H4-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI00051C03BC)

HSP 1 Score: 147 bits (372), Expect = 2.970e-44
Identity = 81/96 (84.38%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:   19 RQGIGKRRRQTPPQGTPRQHPRITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            R G GKR RQ   QG       ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   12 RNGGGKRHRQGVXQG-------ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 100
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: M8C6Z1_AEGTA (Histone H4 n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8C6Z1_AEGTA)

HSP 1 Score: 145 bits (367), Expect = 1.230e-43
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:   61 GTPRQHPRITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            GT   + RITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    8 GTSAFNTRITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 89
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: F0XXB2_AURAN (Histone H4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXB2_AURAN)

HSP 1 Score: 145 bits (366), Expect = 1.300e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   85 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 79
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BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.670e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   85 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.670e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   85 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: H4_MASBA (Histone H4 n=1 Tax=Mastigamoeba balamuthi TaxID=108607 RepID=H4_MASBA)

HSP 1 Score: 145 bits (366), Expect = 3.110e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   85 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   35 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 108
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 145 bits (365), Expect = 3.790e-43
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   85 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 306
            ITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1156.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453N2H0_AEGTS2.520e-5082.35Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A6V7PWM6_ANACO1.630e-4683.67Histone H4 n=1 Tax=Ananas comosus var. bracteatus ... [more]
UPI001BE4C7AC2.060e-4475.23histone H4-like n=1 Tax=Anopheles merus TaxID=3006... [more]
UPI00051C03BC2.970e-4484.38LOW QUALITY PROTEIN: histone H4-like n=2 Tax=Neogn... [more]
M8C6Z1_AEGTA1.230e-4391.46Histone H4 n=1 Tax=Aegilops tauschii TaxID=37682 R... [more]
F0XXB2_AURAN1.300e-43100.00Histone H4 (Fragment) n=1 Tax=Aureococcus anophage... [more]
A0A024G0M5_9STRA2.670e-43100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
F0W2L9_9STRA2.670e-43100.00Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
H4_MASBA3.110e-43100.00Histone H4 n=1 Tax=Mastigamoeba balamuthi TaxID=10... [more]
H4_SOLLC3.790e-4398.65Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1156contigF-serratus_M_contig1156:75032..75340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score157.5
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog4565.Traes_2DL_43F0EFCB2.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs37ZQ9@33090,3GPFG@35493,3II7E@38820,3KZS7@4447,COG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.1045823-CDS-F-serratus_M_contig1156:75031..753401622929053.1045823-CDS-F-serratus_M_contig1156:75031..75340Fucus serratus maleCDSF-serratus_M_contig1156 75032..75340 +
1690962683.8350086-CDS-F-serratus_M_contig1156:75031..753401690962683.8350086-CDS-F-serratus_M_contig1156:75031..75340Fucus serratus maleCDSF-serratus_M_contig1156 75032..75340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1156.1283.1prot_F-serratus_M_contig1156.1283.1Fucus serratus malepolypeptideF-serratus_M_contig1156 75032..75340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1156.1283.1

>prot_F-serratus_M_contig1156.1283.1 ID=prot_F-serratus_M_contig1156.1283.1|Name=mRNA_F-serratus_M_contig1156.1283.1|organism=Fucus serratus male|type=polypeptide|length=103bp
VWTRKGRQGIGKRRRQTPPQGTPRQHPRITKPAIRRLARRGGVKRISGLI
YEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGF
GG*
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mRNA from alignment at F-serratus_M_contig1156:75032..75340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1156.1283.1 ID=mRNA_F-serratus_M_contig1156.1283.1|Name=mRNA_F-serratus_M_contig1156.1283.1|organism=Fucus serratus male|type=mRNA|length=309bp|location=Sequence derived from alignment at F-serratus_M_contig1156:75032..75340+ (Fucus serratus male)
GTCTGGACGCGGAAAGGGAGGCAAGGGATTGGGAAAAGGCGGCGCCAAAC
GCCACCGCAAGGTACTCCGAGACAACATCCAAGGATCACCAAGCCTGCGA
TTCGTCGTTTGGCTCGTCGGGGGGGTGTGAAGCGAATTTCTGGCCTCATC
TACGAAGAGACTCGAGGTGTGCTTAAGGTATTCCTCGAAAATGTCATCCG
CGACTCGGTAACGTACACGGAGCATGCCCGGCGCAAAACAGTGACAGCAA
TGGACGTGGTGTACGCCCTCAAGCGTCAGGGCCGGACACTTTACGGTTTT
GGTGGATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1156:75032..75340+

>mRNA_F-serratus_M_contig1156.1283.1 ID=mRNA_F-serratus_M_contig1156.1283.1|Name=mRNA_F-serratus_M_contig1156.1283.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1156:75032..75340+ (Fucus serratus male)
GTCTGGACGCGGAAAGGGAGGCAAGGGATTGGGAAAAGGCGGCGCCAAAC
GCCACCGCAAGGTACTCCGAGACAACATCCAAGGATCACCAAGCCTGCGA
TTCGTCGTTTGGCTCGTCGGGGGGGTGTGAAGCGAATTTCTGGCCTCATC
TACGAAGAGACTCGAGGTGTGCTTAAGGTATTCCTCGAAAATGTCATCCG
CGACTCGGTAACGTACACGGAGCATGCCCGGCGCAAAACAGTGACAGCAA
TGGACGTGGTGTACGCCCTCAAGCGTCAGGGCCGGACACTTTACGGTTTT
GGTGGATAAGTCTGGACGCGGAAAGGGAGGCAAGGGATTGGGAAAAGGCG
GCGCCAAACGCCACCGCAAGGTACTCCGAGACAACATCCAAGGATCACCA
AGCCTGCGATTCGTCGTTTGGCTCGTCGGGGGGGTGTGAAGCGAATTTCT
GGCCTCATCTACGAAGAGACTCGAGGTGTGCTTAAGGTATTCCTCGAAAA
TGTCATCCGCGACTCGGTAACGTACACGGAGCATGCCCGGCGCAAAACAG
TGACAGCAATGGACGTGGTGTACGCCCTCAAGCGTCAGGGCCGGACACTT
TACGGTTTTGGTGGATAA
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