mRNA_F-serratus_M_contig113.1161.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1161.1
Unique NamemRNA_F-serratus_M_contig113.1161.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Match: D8LJ32_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ32_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.180e-22
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 IARWPHSNPRDPGKILRRGELAEVFGDL-GFEVLEDSVERLADGRPVACFLARKRKIIVDYSSSTSSDTSPAQP 219
            +ARWPHS+PRD  KILRRGELA  FGD  GFEVLEDSVERL DGRPVACFLAR+  ++V   S+ SS+ +P  P
Sbjct:  415 LARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARRMPLVVSSPSNASSNANPWTP 488
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BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Match: A0A6H5JC12_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC12_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.530e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 IARWPHSNPRDPGKILRRGELAEVFGDL-GFEVLEDSVERLADGRPVACFLARKRKIIVDYSSSTSSD 201
            +ARWPHS+PRD  KILRRGELA  FGD  GFEVLEDSVERL DGRPVACFLAR+  ++V   S+ SS+
Sbjct:  530 LARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARRMPLVVSSPSNASSN 597
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BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Match: A0A4P9K623_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Thiomicrorhabdus sediminis TaxID=2580412 RepID=A0A4P9K623_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 9.210e-7
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   22 NPRDPGKILRRGELAEVFGDLGFEVLEDSVERLADGRPVACFLARK 159
            +P++P  IL++ ELA+VF   G+E++ D +E LADGRPVA F+ARK
Sbjct:  239 SPKNPNFILQKNELAKVFA--GYEIIVDRIETLADGRPVASFIARK 282
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BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Match: UPI0015BF9BE1 (methyltransferase domain-containing protein n=1 Tax=Thiomicrorhabdus cannonii TaxID=2748011 RepID=UPI0015BF9BE1)

HSP 1 Score: 52.4 bits (124), Expect = 8.360e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   22 NPRDPGKILRRGELAEVFGDLGFEVLEDSVERLADGRPVACFLARK 159
            +P++P  +L+  ELAEVF D  F V+ D ++ LADGRPVA F+A+K
Sbjct:  232 SPKNPEHLLKAAELAEVFAD--FSVIVDKIDTLADGRPVASFIAQK 275
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BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Match: A0A6L5QTZ8_9GAMM (Tellurite resistance methyltransferase TehB n=1 Tax=Kangiella sp. HZ709 TaxID=2666328 RepID=A0A6L5QTZ8_9GAMM)

HSP 1 Score: 50.1 bits (118), Expect = 5.690e-5
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   25 PRDPGKILRRGELAEVFGDLGFEVLEDSVERLADGRPVACFLARKR 162
            P++P  +LR GEL E F   G+++L +   RLADGRP++ FLARKR
Sbjct:  242 PKNPAYLLRDGELEETFA--GWQLLVNEEHRLADGRPLSMFLARKR 285
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BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Match: A0A2I1GEN7_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1GEN7_9GLOM)

HSP 1 Score: 48.1 bits (113), Expect = 9.210e-5
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:   16 HSNPRDPGKILRRGELAEVFGDLGFEVLEDSVERLADGRPVACFLARKR 162
            + NPR     L  GELA  F   GFE++ D +E + DGRPV  FLARK+
Sbjct:   90 YKNPRSNSHRLELGELATKFRK-GFEIINDEIELIEDGRPVNSFLARKK 137
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJ32_ECTSI1.180e-2267.57Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A6H5JC12_9PHAE1.530e-2170.59Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
A0A4P9K623_9GAMM9.210e-754.35Methyltransferase domain-containing protein n=1 Ta... [more]
UPI0015BF9BE18.360e-652.17methyltransferase domain-containing protein n=1 Ta... [more]
A0A6L5QTZ8_9GAMM5.690e-552.17Tellurite resistance methyltransferase TehB n=1 Ta... [more]
A0A2I1GEN7_9GLOM9.210e-548.98Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:372432..378444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.2223425-CDS-F-serratus_M_contig113:372431..3725631622929027.2223425-CDS-F-serratus_M_contig113:372431..372563Fucus serratus maleCDSF-serratus_M_contig113 372432..372563 -
1690962672.8163488-CDS-F-serratus_M_contig113:372431..3725631690962672.8163488-CDS-F-serratus_M_contig113:372431..372563Fucus serratus maleCDSF-serratus_M_contig113 372432..372563 -
1622929027.2320905-CDS-F-serratus_M_contig113:378285..3784441622929027.2320905-CDS-F-serratus_M_contig113:378285..378444Fucus serratus maleCDSF-serratus_M_contig113 378286..378444 -
1690962672.8261335-CDS-F-serratus_M_contig113:378285..3784441690962672.8261335-CDS-F-serratus_M_contig113:378285..378444Fucus serratus maleCDSF-serratus_M_contig113 378286..378444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1161.1prot_F-serratus_M_contig113.1161.1Fucus serratus malepolypeptideF-serratus_M_contig113 372432..378444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1161.1

>prot_F-serratus_M_contig113.1161.1 ID=prot_F-serratus_M_contig113.1161.1|Name=mRNA_F-serratus_M_contig113.1161.1|organism=Fucus serratus male|type=polypeptide|length=97bp
IARWPHSNPRDPGKILRRGELAEVFGDLGFEVLEDSVERLADGRPVACFL
ARKRKIIVDYSSSTSSDTSPAQPGMKTPPTDPFSGPLADGVHEFFR*
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mRNA from alignment at F-serratus_M_contig113:372432..378444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1161.1 ID=mRNA_F-serratus_M_contig113.1161.1|Name=mRNA_F-serratus_M_contig113.1161.1|organism=Fucus serratus male|type=mRNA|length=6013bp|location=Sequence derived from alignment at F-serratus_M_contig113:372432..378444- (Fucus serratus male)
ATAGCGAGATGGCCTCACAGCAACCCTAGAGATCCCGGGAAAATCTTGAG
GAGGGGGGAGCTAGCCGAGGTTTTCGGGGACCTTGGGTTTGAGGTGCTCG
AGGACAGCGTGGAACGTCTCGCAGATGGGCGGCCGGTGGCGTGTTTTCTT
GCGCGGAAGGTAAGCGAGCGAGAGATGCTTGTGTTAATTATCCTCTTTTT
TCATAGTCTCCAGTCCACTTCGCGAAAGTTGTTTCTGCTTTGTGTGTGTT
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGATTATTAAACTGCACATGATCGCGCAATCCGGCCCT
GTCATCCTAGTTATTTTATGCGACTCGCATTGATCCTCCCAGGGCGGGAT
GTGTGTGTGTGTGTGTGTCTATTAAATTATACATAACCGCGTAATCCGAC
CCTGTCCTAGTCATTCTATGCCACTCTCCCAACGGGGGATTAATGATACT
TATTACGAAAACCTATGATCAGACGCGACAAAGGGGACACACTCTTTCTA
CGTGTACAGTTCTTGCTAAACCCTGGGTACTTTGTCTTTCCCCCGTGCTT
CCTTGCTATTATATTCTCTAGATTATCTGGGTTGACAGCTACTGAACCAA
CCCTTCTTGTCTACGTTTTTTTGTTTCCACACAAGTCTCCCCCGTTTCCC
ACATCGCGTCTAAAACTCTTGTGCGGTTTCTTGCGCTTAATCGTCTCTCC
TCCGCCCTCCCTGATCCCGTCCTCGTTCCCATCTCCGCTACTGCTCTCGT
TTCCGTCCACGCTCCCGTCCCCATTCCCATCCTGTGTTCGTCCTCTGATC
TCCACCCCCGTCCCCGTTCCCACCTTGCGGTACTTCCTTCGCCTCCACCC
CCGTTCTCGTTCCCGCCCTCGACCCCGTTCGCTCCTTCCCGCCCCTCGGA
CCCGGTCACCCCCTCGGTATGATGCGCGTGTACAGACACCGGTCCTTGCA
AGCGGAGCTGTCCGGTGCCCGCAAGCGCCACCCTCTGTCTGCAGAGATGA
TGACGCGTGCGGAATGAAAATGCCTGATCGCGTCTACAACTCTTGTGCGG
TTTCGTGTGCTTCTTCGCCTCTCCTCGGCCCCCCCGATCCCGGCCTCATT
CCCGTCCCCGTTCCCATCCTCCATTCTCATCTCCGCTACTGGTCCCGTTT
CCGTCCCCGCTCCCATCCCTGTTCCCATCCTGTGTTCGACCACGGGTCTC
CACCCCCGTCCCCGTGTGTGTGTGTTTGTGTGTGTGTGTAGTTATTAAAT
TACACAGAACGGCGCAATCCGGCCCTGAAATCTACCCATTATATGCTACT
GTATGTAACCCACCTGCGGGTTACTTTTCGTGAACATATTCTTTGCTAGA
AACGTGCATGCGTCCAGCCACAACTCCTCTCCCCACTACGACGTCGCACG
GCCGGAATCCCACTCTTTCGATATCAACTATTAATACAACGCTTTGCCCG
GAAAAAAATATGGAGACGAAAACGCGGGAAATGGTGGGCAGGCTTGTTCC
CCTCCAACACATGAGTAAAGCTAGTTGCTCGCCGTTTGGCGCAAGTAGAG
ACGGAAATCCGACAAATAGGGAGCACCACGGCCGACTCTCCTTGTAACGT
CCCCATCCAAACCCAATAATCTCGCCTCCAAAATCTAACCGTGTAACGTA
CTGCAGCAGTGATGTCGCCATTCCGCCCTCCTCCCCTTACAACATCCAAT
CGGTGCGTGTCCCGACTATACCCACACATCTATTATTTCTACCCAGTAAA
GTCCACGCCAGCCATAGGGCCCGGGATGGAACGTCAACCGCAAGTCTTTC
GCTGGGTGCAAATTGTGAGGCCAAGGAGAGGGTCAAGGGTAAAGCTAGTC
GAACACAAAGTAGTCAAATAGGGTCTGCAATCTTGTGCGTACGCCGGAAC
GTATAACATTGTGAGCTAAAACTCCCCGGGTCCACGCGATATGTGCTCAT
AACTGTTGTAATGGTTGCTGTACCTCCACATGGGCACACCAGTTGCCTAG
TATGTCCTCCTCCCCTCTCGTCCCAAAACATACCGTCACACGAAAAATAC
CACACAAGCCGTAGGGCCCGGGGTGAAACGCAGACCATGAGTCTTGCGCT
GGGCGCGAAGCGTGAGGGCAAGGGGAGAGTCAAGGGTGAAGCTAGTCGGA
TACAAAGTAGCCGAATAGGGTCTGCGCTCGTATGTGTACGCCGGAACGCA
CAGCATCGTGAGCTAAAACTCCCCAACTCCACGCGATCTGCGCTCATTAC
CACAGTCATGGTTGCTGTACCCACCAGTGGGCCCAACTGTTGCCCAATGA
GTCCTCCCCTCTCGTCCCAAAACATACAGTTACACAAAAAGGCCCCCTTC
AGCCATAGGGCCCGAGGTGAAACACCAACCGTAAGTCTTGCGCTGGGCGC
GAAGCGTGAGGGCAAGGAGAAAGTCAAGGATGAAGCTAGTCGGATACAAA
GTAGCCGAATAGGGTCTGCGCTCCTGTGTGTACGCCCGAACGCACAGCAT
CGTGAGCTAAAACTCCCCAAGTCCACGCGATTTGTGCTCATAACTGTCGT
AATGGTTGCTGTATCCCCAAATGGGCACACCAATTGCCTAGTATGTCCTG
CGCCCCTCTCGTCCCAAAACATACAATCACACGAAAAAAATCCCACAAGC
CGTAGGGCCTGGGGTGAAACGCAGACCACGAGTCTTGCGCTGGGCGCAAA
TCGTGAGGGCAAGGAGAGAATCAAGGGTAAAGCTAGTCGGATACAAAATA
GCCGAACAGGGTCTGCGCTCGTGTGTGTACGCGGAACGTACAACATCTTG
AGCTGAACTCCTCGATTCCACGCGATTTGAGCTCATTGCTGTTGTGATGG
TTGCTGTGTCCGCCAGTGGGCCCACCGGCTGTCTAAAATCAGTCCTCCTC
TCTCTCGTCCCAAAACGTACAGTCACACATGAACGCCGCCGCAAGCCATA
GGGCCCTAGGTGAAACACAAACCATGAGTCTTGCGCTGCGCGCAAATCGT
GAGGGCAAGGAGAGAGTCAAGCGTAAAGCTAGTCGGATACAAAATAGCTA
AAGAGGTTCTGCCCTTGCATGTGTACGCCGGAACGTACAGCATCTTGAGC
TAAACCTCGCCGATTCCACGCGGTTTGCGCTCATTACTATTGTGATCACC
TGTGGACCCACCGACTGTCTATAACTAGTCCGCTTCCCCTCTTGTCCCAA
AACATACAATCACACGAAAAATACCCTACCTGGTACAAGCCATAGGGCCC
TAGGTGAAACAAAGGCCAAGATGCTTGCGCTGCGCCCAAATCGTGAAGGC
AAGGAGAGAGTCAAGGGCAAAGCTAGTTGGATACAAAGTAGTCGGATAGG
ATCTGCGCTCGTGTGTGTACCCCGTTACTGTTGTGATGGTTATGTGTCCA
CCTGTGGGCCCACCGGTTGCCTAGTAAGTCATCCTCCCCTATCATCCCAA
AGCATGCAGTCGCACGGAAAAGCCCCCTTCAGCCATAGGGCCCGAGGTGA
AACACCAACCATAAGTCTTGCGCTGGGCGCGAATCGTGAGGGCAAGGAGA
GATTCAAGGGTAAAGCTAGTCGGATACAAAGTAGCCGAATAGGGTCTGCG
CTCCTCGTATGTGTGCGCCGGAACGCACAGCATCATGAGCTAAAACTTCC
CGGGTCCACGCGATTTGCGTTCATTGATGTTGTCATGGTTGCTGTATCCC
TAAATGAACCCACCGATTGCCTAGTAAGTCCTCCTCCCCTCTCGTCCTAA
AACATACCATCACGCAGAAAAGTCCCAGCAGGCCGTGGGGATAGCTGCGA
CACAGCGCATCGACTGGTGTTGGCTACTGCTGTTACTATTGCTACAGTTC
CCGGGGCTGGGGTGGGTTAGCAAAAGGCGTAAGCCGGGGCAGAACAAGAG
AACGCGGCGGAATTCTACCCGAGTCCTCGATGGACGGGGCCAAGCTGTCG
AGCTGAGTTGTTGATAAGCCCCACCTTTCCTCCACTAGCATTCCCGTCTC
TATTAACACTAATAACACTATTAACGCCGCTAACACTATTAACACTATTA
ACACTACTAATAGTAGTCCCGCCTCCAGTAACACTATTAACACTGTTAAC
ACTACTAACAATATCAATAGCAGACCCGCGTTAACTCTATTAATAGCAGT
CCCGCCTCTATAACCACTAGTAACACTGTTAACATCACTAACCCTATCAA
TAGCATTCCCGCCTCTATTAACACTATTAACAACATTAATACTATTAGAA
CTATTAGTCTAATAGCTCTGCCCCCTCGCTTCACCATGCTATCATGCTAT
CATGCTATCATGCTACCATGCTATCATGCTATCATGCTTGCTGGACCCTT
GTCGTCCCGAGCAGGCGGGGCTCGGTCCGTACCACCGACCCCAGCCCGAA
ACGTCCCACCAGCCCAAAAAGTTCTCCCAGGGCCACACTGGCGACACGTA
AATCCGTGCCCCCATGGAAAGGTAAGGGGGCTATAGGCCGATCCCTCCCT
ACTGCAGCTACACAGCTAGTCTAGACAGCTACAGCGGTTGTCCTCCACTG
CAGGGTTCTGGCTTACCCCCTCGGGGTACGTGTGTACGTGTATTTATCAA
ATTGCACATAACCGCGCAATCCGACCTTGTCAGCCTAGTCGTTCTATGCC
ACTCGCATTGACCCTCCCAAGGGGTATCAATGAGACTTCTTACAAAAACC
TCTGATCAGACGCGACAAAGGCGTGTGTGTGTGTCTGTGTGTGCGCGCCC
CCCATATACAAGTGGTACGTACTGTTTTTTTCATGCGTCAAACGTGGTAC
CAGGTACATGTTTTGTTGGTGTCCCTCTTCCACGCAATGTTTTGATATAT
ATATATATATTTTTTTAATCACACTTATATAGTATATTATATGGGAAACA
AACTTCAGGCCAGGACAATGGGGACCGCGTTTGTAGCGTGTGTTTTTCAC
ATGAACCGATCGGGCCTCTCACCTATACCCAGTAATATACGCGGCTGCCG
ATCCGGTAGGGTGCGTGGTTTGCTGGACAGGAAAAAATAAAAATAAAAAT
CCTCTGTCATACCCAGCTTTCAAAGAAAGCAAAAACCCGAAAACGTTACT
CTACAAATGAATGTGTTTTCTTCCACATTGTTACACACATAAATTGGGAC
CATCAAGTCGGGAAAGCCAGCAGTCTTCCCCAAACGTCCTTTCACTACAT
GCTGCCAACCGTATGGCGTGTTCAAAGCCATCCCCGCGGGATTGGCACGA
ATAAATCGTTACAGGTATATCTATACTCCTATATAATATATATATCAGTA
GTCGTGGATAAAACTTCCTGCGCGTGCCCTCGATTCCCCCATGTGCGCGC
TGCCATGTGTAATTTATCGAGGGCACGCGCAGGAAGTTTCCCCCCTTATT
TTTATTTGCGCGCCAACCCTTCCCTTCACCTCTATAGTCATGCTATTAAA
TACTATGTCATACGATTGAATAATATTTACTATTAATAATGGTCACCTCG
CCGCCTCTATCAATAGTAATAGTGACAGCAATAGCAATAGTACTAGTGAG
CGCCTCGCTGGATACGAACTCCGACGTGCCTTGCGTAGCTTGAAATCTGC
TTTGCGGCTATCGGAGGGTACAGTCGTCCGGGGCTTGGGCTCGGTAAAAC
GCTTCGAAAAGCGCCGTCCAAACTCCCACTGGTCACTTGAAAAATGTCAT
TAAAAATGACACGAAATTATCCCCCCCCCCCCACCCCCCCCCAACCCCCC
CACCCCACCCTTCGAAATCCCCACCACTTTTTGCATTTCCCTTCCTCTTG
TCTTTTTTCCTATTTTTTCTCCCTTGTGAAGCGCAAAATCATCGTGGATT
ATTCGAGCAGTACCAGCAGCGATACGTCCCCTGCCCAGCCCGGGATGAAA
ACGCCTCCAACGGATCCGTTTTCGGGACCTCTTGCTGATGGTGTGCACGA
ATTTTTCCGCTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig113:372432..378444-

>mRNA_F-serratus_M_contig113.1161.1 ID=mRNA_F-serratus_M_contig113.1161.1|Name=mRNA_F-serratus_M_contig113.1161.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig113:372432..378444- (Fucus serratus male)
ATAGCGAGATGGCCTCACAGCAACCCTAGAGATCCCGGGAAAATCTTGAG
GAGGGGGGAGCTAGCCGAGGTTTTCGGGGACCTTGGGTTTGAGGTGCTCG
AGGACAGCGTGGAACGTCTCGCAGATGGGCGGCCGGTGGCGTGTTTTCTT
GCGCGGAAGATAGCGAGATGGCCTCACAGCAACCCTAGAGATCCCGGGAA
AATCTTGAGGAGGGGGGAGCTAGCCGAGGTTTTCGGGGACCTTGGGTTTG
AGGTGCTCGAGGACAGCGTGGAACGTCTCGCAGATGGGCGGCCGGTGGCG
TGTTTTCTTGCGCGGAAGCGCAAAATCATCGTGGATTATTCGAGCAGTAC
CAGCAGCGATACGTCCCCTGCCCAGCCCGGGATGAAAACGCCTCCAACGG
ATCCGTTTTCGGGACCTCTTGCTGATGGTGTGCACGAATTTTTCCGCTAG
CGCAAAATCATCGTGGATTATTCGAGCAGTACCAGCAGCGATACGTCCCC
TGCCCAGCCCGGGATGAAAACGCCTCCAACGGATCCGTTTTCGGGACCTC
TTGCTGATGGTGTGCACGAATTTTTCCGCTAG
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