mRNA_F-serratus_M_contig1122.1128.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1122.1128.1
Unique NamemRNA_F-serratus_M_contig1122.1128.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1122.1128.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.470e-18
Identity = 119/281 (42.35%), Postives = 140/281 (49.82%), Query Frame = 2
Query:  959 VFVALSSSLVFLNLSRNKFQGEMPLGDLLP-------RPGKEEATNQKEAKNSGSCEEPKVALPAEMTGSPISYLNLSRNKLTGHIPEEIGALNSLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGLRSLRLEGNPSLEGPIPDYLAARSECMVSADKTVLEDTEARMLGSRLEEWFLVPRKA 1780
            +   LSSSLV+LNL  N F+G++P+  L         R G    + Q + +   S  +   +  A ++ SP+SYLNL  NK TGH+PEEIG+L SL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                        TGLRSLRLE NPSL GPIPD LA+   C V AD+ VLEDTEA MLGS+L+EWFL+PRKA
Sbjct:  386 ILSTLSSSLVYLNLGHNAFEGDLPVSPLSSHSAGGRVRRGSRSGS-QSDGQGRNSRRKRSESAAAVVSASPLSYLNLCHNKFTGHVPEEIGSLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDGGGLGRLSSLEILRLDGNTFHGIVPAALGNLARLEVLHLQLDRLWALAVRDNNLSGRVPESLGCL-------------------TGLRSLRLEENPSLRGPIPDQLASGVNCNVRADQPVLEDTEAAMLGSKLDEWFLMPRKA 646          
BLAST of mRNA_F-serratus_M_contig1122.1128.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.030e-12
Identity = 164/280 (58.57%), Postives = 186/280 (66.43%), Query Frame = 2
Query:  959 VFVALSSSLVFLNLSRNKFQGEMPLGDLLPRPG----KEEATNQKEAKNSGSCEEPKVALPAE--MTGSPISYLNLSRNKLTGHIPEEIGALNSLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGLRSLRLEGNPSLEGPIPDYLAARSECMVSADKTVLEDTEARMLGSRLEEWFLVPRKA 1780
            V  ALSSSLV+LNL  N F+G++P+  L P       +  +T+   ++  G     + +  A   ++ SP+SYLNL  NK TG + EEIG+L S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      RLE NPSL GPIPD LA+   C V AD+ VL+DTEA MLGSRL+EWFL+PRKA
Sbjct:  247 VLSALSSSLVYLNLGHNAFEGDLPVSPLSPHSAGGRVRRGSTSGSPSEGQGRSSRRRRSESAAGVVSASPLSYLNLCHNKFTGRVSEEIGSLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGILEGDDGGGLGRLSSLETLRLDGNTFHGIVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RLEENPSLRGPIPDQLASGVNCNVRADQPVLDDTEATMLGSRLDEWFLMPRKA 521          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1122.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTB3_9PHAE4.470e-1842.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI3_ECTSI3.030e-1258.57Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1122contigF-serratus_M_contig1122:171222..179753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue5.1e-13
Seed eggNOG ortholog2880.D7FPI3
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001704,GO:0001706,GO:0003006,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006810,GO:0006833,GO:0006950,GO:0007275,GO:0007369,GO:0007389,GO:0007492,GO:0008104,GO:0008150,GO:0009505,GO:0009531,GO:0009611,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009987,GO:0010154,GO:0010453,GO:0010470,GO:0016020,GO:0022414,GO:0022603,GO:0030104,GO:0030154,GO:0030312,GO:0032501,GO:0032502,GO:0033036,GO:0035987,GO:0042044,GO:0042592,GO:0042659,GO:0044426,GO:0044462,GO:0044464,GO:0045184,GO:0045595,GO:0045995,GO:0048226,GO:0048316,GO:0048598,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051302,GO:0055065,GO:0055067,GO:0055075,GO:0055080,GO:0061458,GO:0065001,GO:0065007,GO:0065008,GO:0071944,GO:0090558,GO:0090708,GO:0098771,GO:0099402,GO:1903224,GO:1905392,GO:1905421,GO:2000026,GO:2000067,GO:2000280
EggNOG free text desc.Leucine rich repeat N-terminal domain
EggNOG OGs2QV35@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons13
Model size2974
Cds size2643
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.2683651-UTR-F-serratus_M_contig1122:171221..1712881622929017.2683651-UTR-F-serratus_M_contig1122:171221..171288Fucus serratus maleUTRF-serratus_M_contig1122 171222..171288 +
1690962667.7018814-UTR-F-serratus_M_contig1122:171221..1712881690962667.7018814-UTR-F-serratus_M_contig1122:171221..171288Fucus serratus maleUTRF-serratus_M_contig1122 171222..171288 +
1622929017.5149517-UTR-F-serratus_M_contig1122:179489..1797531622929017.5149517-UTR-F-serratus_M_contig1122:179489..179753Fucus serratus maleUTRF-serratus_M_contig1122 179490..179753 +
1690962667.8626277-UTR-F-serratus_M_contig1122:179489..1797531690962667.8626277-UTR-F-serratus_M_contig1122:179489..179753Fucus serratus maleUTRF-serratus_M_contig1122 179490..179753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.283462-CDS-F-serratus_M_contig1122:171288..1713901622929017.283462-CDS-F-serratus_M_contig1122:171288..171390Fucus serratus maleCDSF-serratus_M_contig1122 171289..171390 +
1690962667.7132893-CDS-F-serratus_M_contig1122:171288..1713901690962667.7132893-CDS-F-serratus_M_contig1122:171288..171390Fucus serratus maleCDSF-serratus_M_contig1122 171289..171390 +
1622929017.2976377-CDS-F-serratus_M_contig1122:173262..1735181622929017.2976377-CDS-F-serratus_M_contig1122:173262..173518Fucus serratus maleCDSF-serratus_M_contig1122 173263..173518 +
1690962667.72114-CDS-F-serratus_M_contig1122:173262..1735181690962667.72114-CDS-F-serratus_M_contig1122:173262..173518Fucus serratus maleCDSF-serratus_M_contig1122 173263..173518 +
1622929017.316378-CDS-F-serratus_M_contig1122:173799..1740201622929017.316378-CDS-F-serratus_M_contig1122:173799..174020Fucus serratus maleCDSF-serratus_M_contig1122 173800..174020 +
1690962667.7331617-CDS-F-serratus_M_contig1122:173799..1740201690962667.7331617-CDS-F-serratus_M_contig1122:173799..174020Fucus serratus maleCDSF-serratus_M_contig1122 173800..174020 +
1622929017.3343828-CDS-F-serratus_M_contig1122:174281..1744871622929017.3343828-CDS-F-serratus_M_contig1122:174281..174487Fucus serratus maleCDSF-serratus_M_contig1122 174282..174487 +
1690962667.7413335-CDS-F-serratus_M_contig1122:174281..1744871690962667.7413335-CDS-F-serratus_M_contig1122:174281..174487Fucus serratus maleCDSF-serratus_M_contig1122 174282..174487 +
1622929017.3463817-CDS-F-serratus_M_contig1122:174660..1747421622929017.3463817-CDS-F-serratus_M_contig1122:174660..174742Fucus serratus maleCDSF-serratus_M_contig1122 174661..174742 +
1690962667.7530892-CDS-F-serratus_M_contig1122:174660..1747421690962667.7530892-CDS-F-serratus_M_contig1122:174660..174742Fucus serratus maleCDSF-serratus_M_contig1122 174661..174742 +
1622929017.3571563-CDS-F-serratus_M_contig1122:175077..1756291622929017.3571563-CDS-F-serratus_M_contig1122:175077..175629Fucus serratus maleCDSF-serratus_M_contig1122 175078..175629 +
1690962667.7625124-CDS-F-serratus_M_contig1122:175077..1756291690962667.7625124-CDS-F-serratus_M_contig1122:175077..175629Fucus serratus maleCDSF-serratus_M_contig1122 175078..175629 +
1622929017.3712249-CDS-F-serratus_M_contig1122:175834..1759271622929017.3712249-CDS-F-serratus_M_contig1122:175834..175927Fucus serratus maleCDSF-serratus_M_contig1122 175835..175927 +
1690962667.772081-CDS-F-serratus_M_contig1122:175834..1759271690962667.772081-CDS-F-serratus_M_contig1122:175834..175927Fucus serratus maleCDSF-serratus_M_contig1122 175835..175927 +
1622929017.3852904-CDS-F-serratus_M_contig1122:176203..1764011622929017.3852904-CDS-F-serratus_M_contig1122:176203..176401Fucus serratus maleCDSF-serratus_M_contig1122 176204..176401 +
1690962667.7815106-CDS-F-serratus_M_contig1122:176203..1764011690962667.7815106-CDS-F-serratus_M_contig1122:176203..176401Fucus serratus maleCDSF-serratus_M_contig1122 176204..176401 +
1622929017.3987164-CDS-F-serratus_M_contig1122:176610..1767931622929017.3987164-CDS-F-serratus_M_contig1122:176610..176793Fucus serratus maleCDSF-serratus_M_contig1122 176611..176793 +
1690962667.7916908-CDS-F-serratus_M_contig1122:176610..1767931690962667.7916908-CDS-F-serratus_M_contig1122:176610..176793Fucus serratus maleCDSF-serratus_M_contig1122 176611..176793 +
1622929017.436211-CDS-F-serratus_M_contig1122:177392..1775891622929017.436211-CDS-F-serratus_M_contig1122:177392..177589Fucus serratus maleCDSF-serratus_M_contig1122 177393..177589 +
1690962667.810443-CDS-F-serratus_M_contig1122:177392..1775891690962667.810443-CDS-F-serratus_M_contig1122:177392..177589Fucus serratus maleCDSF-serratus_M_contig1122 177393..177589 +
1622929017.451057-CDS-F-serratus_M_contig1122:178140..1782791622929017.451057-CDS-F-serratus_M_contig1122:178140..178279Fucus serratus maleCDSF-serratus_M_contig1122 178141..178279 +
1690962667.8207383-CDS-F-serratus_M_contig1122:178140..1782791690962667.8207383-CDS-F-serratus_M_contig1122:178140..178279Fucus serratus maleCDSF-serratus_M_contig1122 178141..178279 +
1622929017.4685087-CDS-F-serratus_M_contig1122:178604..1787571622929017.4685087-CDS-F-serratus_M_contig1122:178604..178757Fucus serratus maleCDSF-serratus_M_contig1122 178605..178757 +
1690962667.830775-CDS-F-serratus_M_contig1122:178604..1787571690962667.830775-CDS-F-serratus_M_contig1122:178604..178757Fucus serratus maleCDSF-serratus_M_contig1122 178605..178757 +
1622929017.4977002-CDS-F-serratus_M_contig1122:179228..1794891622929017.4977002-CDS-F-serratus_M_contig1122:179228..179489Fucus serratus maleCDSF-serratus_M_contig1122 179229..179489 +
1690962667.840986-CDS-F-serratus_M_contig1122:179228..1794891690962667.840986-CDS-F-serratus_M_contig1122:179228..179489Fucus serratus maleCDSF-serratus_M_contig1122 179229..179489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1122.1128.1prot_F-serratus_M_contig1122.1128.1Fucus serratus malepolypeptideF-serratus_M_contig1122 171289..179489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1122.1128.1

>prot_F-serratus_M_contig1122.1128.1 ID=prot_F-serratus_M_contig1122.1128.1|Name=mRNA_F-serratus_M_contig1122.1128.1|organism=Fucus serratus male|type=polypeptide|length=881bp
MVVKLSRHQLAEILHRAGIDSDDEIELQLQTLDKIKSSTIDSDKLDQDRL
KELLWHYDEDFKEWEESPETFDWDGISVDLDKRVTAIHISNKNFYGEIPS
GLGEFAHLEQFHASCNQFTGDIPATIGGLSRLTSLRLDHNYLSGKLFSSL
TQLANLTVLDMARNRISGTIPTKLSRMTSLRRLSLGMNKARHCLTGVIPK
QLESLAFLVELRMPENKLEGKIPPQLGNMSSLQALDLASNNLQGCIPASF
GSLTDLRELWLSNNNLLGGIPETLGKLTNLQSLDLSSNKLASRLPRRVFV
ALSSSLVFLNLSRNKFQGEMPLGDLLPRPGKEEATNQKEAKNSGSCEEPK
VALPAEMTGSPISYLNLSRNKLTGHIPEEIGALNSLTTLDLSHNKLSGQL
PPGIGGCSALRTLSLSQCCLTGVLDGSDDGAVGPWGLGMLTLLETLRLDG
NEFEGNVPTAFGDLTCLKVLQLQGNEFSGCLPSSLGQLDQLWAFVVRDNR
LSGRVPESLSRLTGLRSLRLEGNPSLEGPIPDYLAARSECMVSADKTVLE
DTEARMLGSRLEEWFLVPRKAFLNLSEFPGHVSIGPSLVRCVSTVVAYEC
HVFVDAKGKRLVVRRSEIAFFSHCWNLRRHQCPPSPALLEGPHSDSSDRA
KLRHMKACLGDAPSDIQYVWLDMLCVPLADPKRRRASGRSLPFFVQNSAR
LYFLGADEAGIERLKTRAWCRLEALCAACPLQPCNTLSAFSPKPRHDSSD
VRFTYNSVECFSSTWENGARIQERVGGIDGLASAGFIQNPATGKMSDQND
RQDLAEATLAVVDVMDLAGCVDAAFAETLRKSCKLIFFREHEPEGDVQSL
LSFETYYGGRFGRFSRRKRVTPSVSSPTTT*
back to top

mRNA from alignment at F-serratus_M_contig1122:171222..179753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1122.1128.1 ID=mRNA_F-serratus_M_contig1122.1128.1|Name=mRNA_F-serratus_M_contig1122.1128.1|organism=Fucus serratus male|type=mRNA|length=8532bp|location=Sequence derived from alignment at F-serratus_M_contig1122:171222..179753+ (Fucus serratus male)
TCTTGTCTGCGAGGCAGGATTACCGCAGCACTGTCAAGCGTGCCTCGACT TCGGCATCGACGGTGATATGGTGGTCAAGTTGTCCCGACATCAACTCGCT GAGATCTTGCACCGCGCGGGCATTGATTCGGATGATGAAATTGAGCTCCA ATTGCAAACATTGGATAAAGTGAGGAGATTTAGGGTTTTTCTGTGCAGCT TACCAATGTATACATAGTAATATGTGTAGGCACTGTACCCGAAAAGTACG GAGTATGTACCAGTACTTGTTTAGAAAAGGACCGATAGCTTGTACCTACG CCGCCGGTACTTTCAGCATGCCCACTTCATACCAATAGTGTGTGTGTAGG AAAGAGAGGCGCATATTAATTGGTCCATGGTGGCCTGCCAAGGCAACACC TGTTCGGAGCTACCTTGAGGCTTACTGGCCCTGTGCCGGCGGACTCTCGG CAGTGAACGCCATCGATACGCAGTTGCGTGACTCGATAAACTCGGGACTG GTCCGATGGCGTATGGCAGCTTAAATTAAGAGGATATTCTCTTGTTTACC CCCCAACCTGCATCTCGCGTCAGAAGACTTGGTTGGTCACAGTACATGCA TAGGTGTGTTAGGGTTAGGGTTAGCTATCATGGGATCTAACGTGCACCCC GAACGGTCCTGTCCACGTGCTGCCACGGCCGGTGGGGTGGTTGGTGTTTT CTGGTATGTATGGCTATTTGCCCTTACAGACCTTACCAATCTTCTGGGGC TCCCGTGTTATAATAATGGCAGTTTTATATTCGTGTGACTTCCGATCAAC CTATCACTTTCCTAGATAGAAGGGGAGTATCAAGACCTGTTAACGCTGTG ACTTCCGATCAATCTATCAAACTCCTAGATAGAAGAGGAGTATCGGTGAA AGAGTATGAGCGATTCGACAGTTTCATTATGGGAGTTACAGTAGTATTAT TGAGTTACTTACATGGGGATGGATTCAATATCTCCCCGTCAGATTACTGT CTTGTACTACCCACGTCTCACCCCTTCCCTTGTGTTTCCCTCTCCATGTG TATAAGGGTATACTAAGTGTATGGTCATTCCAGAGCACGCTAAGCGAGCT ACTGGAACGATGACTATATTCTAATTAGGGCGCTCAAGATGACTTCCGAT CACCGTGGCTGAACATCGTGTTTAGCCCATAACGTCCATCATCTCCCATC TCCTCCCGTGTAAGACCTGTCAACGTCGAGACTTGTGATCGATGTGTGTT ATAAGGACTGATTACCGATACGTAATCGTCAATTGCCttttaccctgtgg tgaaATAGTTTACTTAATACTGGCGTCGTCCCCCGTCACCAGTACGCATG GACAACGGAAGAAGACGTAAATGTTTGTTTTTTTTATTAGAACTATCGGT CCTCAGGTCAGGAGTAAAAACTGTAGGTCATTTTCCACTCTCGAGGCCAT TTTTCTCAAAATGGGCAACACGCCACGCAGTCCTCTTTTTTCGTCAAGAT GGTGGTGGTCCGTTGTCCGCGAGAAATATTCCGTGCATTGCCTTCAAGCT CGATCGAGTATTGGGTACTGTAGTACACCGTAACTTCATAGCATGGAGAG TGTTAACAAGATCCCCTATTAATAGACTATGACTATTAAGCTGTTACTGT TATGGCAAGTACAAGCGGGAAGCATTGGGACGCAAATAAGCAAAGTTCAA TCATTGTTTGACGAGTTGTAAGAGTGCTGAACTTGCACTACAATGAGGAA TCGTAGGCGTCTACCGGGTACTGACTGTGGAAATTACTGAATTCTCTATT ATAGGATCACAGGTGACATAAGCAGAGTTGGGCAGGTTGCGTTGAAAAAG TACGTGAAAATAATCACAAATAAATATCTACTAATAGGCTGTTTATCAAC AGTAGAGCTCTAATAGCAATACGCCACGCGTTTATCTATTTCAGTGTTAT CTGTAGAGAGTAGATATCCAATCCCCAGTGGAGGTGTAACACAATTCCCG TACACTTCTTATAACCAAAAACTGCCTCCTCCGACGCCTAGATAAAGAGC TCGACGATAGACAGCGACAAACTTGACCAGGACCGCCTGAAGGAACTGCT TTGGCATTATGACGAGGATTTCAAGGAATGGGAGGAGTCTCCGGAAACGT TTGATTGGGACGGGATCTCTGTTGACCTTGACAAGAGGGTCACCGCAATC CATATTTCCAACAAGAATTTCTACGGCGAGATTCCTTCCGGTCTCGGGGA GTTTGCCCATCTTGAGCAATTCCACGCTTCGTGCAACCAATTCACCGGTA GGCCCACAGACAACAAGTCAGGAAGAGACCTTAGAAAGAACCGATTGTCT TGTAGATTATGGTACAGTATGATGCGGTACAATAACAAAAAGCATGATTC GGCCACTCTGCGCACACTCACGTAAATGATGATGTGACTTTGAAATGAAA TGATTTCGTCTCGGTCACCAAGAGATGATACTGGACGTATTCAAATCGAA TGAGTACATTGTGTTGCAGTAGTTGCCTTCGATTGCGCTTACAGTAGTTT GCCTCGGTTCGCCCGCGCGTGATCACAGGAGATATTCCAGCAACGATTGG CGGGCTTAGCCGTCTTACCTCGCTCCGACTGGATCATAATTATCTTTCGG GGAAGCTTTTTAGCTCGCTGACGCAACTGGCAAATCTCACTGTTCTCGAC ATGGCACGGAATAGAATATCAGGCACAATCCCAACAAAGCTTAGCAGGAT GACTTCCCTCCGTCGGCTGAGTCTGGGAATGAACAAGGCAAGGCATTGCG TCGTGGAATGAATGCAATCAAAGAATGTGGTACAGAGTTTATCGGGGTTT TTTTTCCAATTATCATCCAATACTATACACAGCCAATCATATTTACTGCA GAATGATTGCGTTCTACTTTTTGGCGACTGAGTCATCCTATCGGCGCAGT GTTGAAGAACCCTCAATGTACCAGATCTAGTCACCATTGCCGCCTGTTCC CGACAAACAATTATTCCTGCTTCTAATGTCAAATGTCTTTTGTTCGGTGC CCTCTGGCAGCTGACTGGGGTGATCCCGAAGCAATTGGAGTCCCTAGCCT TCCTGGTTGAGCTGCGGATGCCTGAGAACAAGCTGGAGGGCAAGATACCC CCACAACTAGGAAACATGAGTTCGTTGCAGGCTCTAGACTTGGCGTCAAA TAACTTACAGGGCTGCATTCCGGCGAGCTTTGGGAGCTTGACCGATTTGC GCGAGCTGTGGCTCAGGTACAGGTGGTACATACTCTGTTCGTTATCCCTG CCAGGGCATCTTCTGGTCTTTCCAGGCGGGAAATCAGTGAAAGCCGAATT TGTGACGTACTGGTACTAGATATACGCGTCAACACAACTTGTATCTGACA ATAATAAAAACAGACCAATTTTCTTCTTTGCTCCGGCAGCAACAATAATC TACTAGGAGGAATTCCGGAGACTTTGGGCAAGCTGACGAATCTTCAAAGC CTCGACTTGTCGTCGAACAAGGTAGGCACGCCAAGTCTGGAGGTTGGAGA TCAGATCGAAATAAAGAAACCTACACTGTTTTTTGTTTTGTTTTTTTATT CCAAACAGGGTTTTGGCACACTACGTTGCGTGGTGGTTGTGTTGATCGAC AACCAGTTGGTTTTCCTCCTTTAATAGAGGAAAGTTGTTGCGCGCTTCAA TTATCTACCGCACGCTGACTGTGACTACTATTTCCCGGCGTTTCAAACGT GTGCGCCAATGAACAAAGCACGACTGCTCTCGGTGCGGGCGCCCAACGCT ACTTTCCGAACGCCCCAAAAAATGTCATGTTTTTGTCGTTCCCTTGGTCG CTGAAGCTCGCTTCCAGGCTTCCACGACGGGTCTTTGTCGCGCTGTCCTC GTCACTGGTCTTCCTGAACCTCAGTCGTAATAAATTTCAGGGCGAGATGC CTCTAGGCGATCTTTTACCACGCCCGGGCAAAGAAGAGGCCACGAACCAG AAGGAGGCCAAGAACTCAGGCTCCTGCGAGGAACCAAAAGTTGCCCTGCC CGCCGAGATGACGGGGTCGCCCATTTCGTACCTGAACCTCTCCCGCAACA AGCTGACGGGACACATACCGGAGGAGATAGGAGCCCTGAACTCGCTCACC ACTCTAGATCTGTCACACAACAAATTGTCAGGACAACTCCCTCCGGGAAT CGGTGGTTGCTCGGCCTTGCGCACGCTTTCGCTATCTCAATGTTGTCTGA CGGGTGTACTGGACGGTTCTGACGATGGAGCGGTGGGGCCATGGGGCCTT GGGATGTTGACTTTGCTGGAAACGTTACGGTTGGACGGCAATGAATTTGA GGGAAACGTGCCAACAGCCTTTGGGGATCTCACTTGTCTCAAGGTTCTCC AGCTACAGGTCAGGTGTATGATACTCCGGTCGCTGCTAACTGTTTACGGA GAAATATCTCACACGGATGCATTTTACAGTTGGGAGTGTCGACAAAGGAC AAGAGAAGATAGAATAGCTCGACGCTATTTCTGCCCGCTGACTCTCATGA GTGACATTGAAGAGCTGCATACACCTCGCGATGTTGCTCGCCTGCCATCC CATTAACCTTCAGGGCAATGAGTTCAGCGGATGCCTGCCTTCCAGCCTTG GGCAGCTCGATCAGCTTTGGGCATTCGTTGTTCGGGACAACCGTCTGTCA GGAAGGGTGCGTATCCGATTCAAACTTGGGCAATGCCCTCTGGCCCAGAA GCAAGTGACCGTGTAACTCTTGTTTTTTCAATCCCAATAACTCTTGTTTT TGCCAAGGCGCGATGATAGCAGGGTCGGAACAACGAAGTCACTCTTCAGA GGTGTCAACGAGCGGTGCTTTGTGTGTAATAACTTGGAAACATCTTCAGG AGCGTATTTTTTGCCGCGCTATTATTTCACGCGCAATTCATCGTACGGTT TTCTCTATGACGCCACGACGCGCCTGCCGAAGGTACCCGAATCCCTCAGT CGGTTGACCGGACTACGGTCGCTCCGGCTCGAGGGAAATCCTTCCCTCGA GGGTCCGATCCCTGACTACTTAGCAGCTCGGTCGGAGTGTATGGTGAGCG CGGATAAGACTGTCCTGGAGGACACTGAGGCTAGAATGCTTGGATCGCGG CTGGAGGAGTGGTTCCTCGTGCCCCGGAAGGTCAGCACTAACTACCGCAC CAGCAGCCGTATGAACGTCCTGCAAGCGATTATCTTCCTTCCAATTTACT ATGCTGCGCGGGGTATGACCGGTGCGACGCTCTTCGAACCGACGTAACAC TTTGCCTCTCTGATCCAAATCGTTGCCGTAAGGCGGGATGGGTCTCCATA ACTACGACCGCTATCCTCTAACCGTGTTGATAACCGAAGGCATTCCTCAA TCTGTCGGAGTTCCCGGGCCACGTCTCTATTGGACCATCTTTGGTGCGAT GTGTGTCCACCGTAGTGGCTTACGAGTGTCACGTCTTCGTCGATGCCAAG GGCAAAAGGCTCGTCGTCCGTCGCAGCGAGATCGCATTTTTCTCCCACTG CTGGAATCTTCGGCGACACCAGGTCCGTACAGCCGGTCGCCCCGGTGGTT CAGTTGGTAACCTCGAAATCCTCTGACGTTGGGACGTGAGTTCGAATCTC GGTGCAGTCACACGAACTGGGACTCTTCCTCCCCCAAAAAAATAAAATGC CCAACAAATGGAGAACAATTAATTCGTTAGTACACAAAAATTCGACTTGA CGGTCGACGAGGGGAAGGAACGACTGAAAATTTCTCGCGAGAAAAATTAA GCCAAGCACCGCAGAAGGAAGGTGGAGAAATCCTGTGTGACCCCGGCTGG TACGTCCACCAACGTGACGCCCAGAATAAATGGGATGACAATACACATAA CACAGGGCAAGCGGGAATGCTCTATTAATAGCCACTACGGCCAATTTCGT CGAGTTTCTGACGTCCTCAGCAGCCAAGATATTCCCCAATAACGATGATG TTCGGACTGGCGCAAAATAAGAAATCTTCGGTCGAAACAGCTCGATACAA TGTCAAGCGGTTGGGCCCACCACGCGGTACTGCTCTGTCTTGCCATCCTT GAAACCGCCTGTGTGTTTCAGTATCTCCCAACGCCTGGCTTGTTCGACCT GAAATCGCCCGTATGTTTTAGTGTCCCCCAAGTCCTGCTCTGCTGGAGGG ACCCCACTCGGACTCGTCCGATCGCGCCAAGCTCAGGCACATGAAAGCTT GTCTCGGGGACGCCCCGTCGGACATCCAGTACGTGTGGCTCGACATGCTC TGCGTCCCGCTGGCAGACCCTAAGCGACGAAGGGCTTCGGGGCGTTCTTT ACCGTTTTTTGTACAAAAGTGAGAACCTCGACGACCATGTCACGGGAGAC GGGCGGCGTGTTTCGCGTATTCCATGATGGGGCTAGTAGTGGGCAGCTCG GCCACGAAGCACTATCAGCAAACCCCTTCATTTCGCGGCACAACGTCAGG CTACATTTCGACGAGTTCTAAAAATATCGACGAAAAGTTTAATGTTGACC CAGGCCACACTTGGTCGGACCTTCTCGATGATTTACGTAGGTGCTACAAC ACAACTCTCAGCTCTTTTGAGTCCCCTCCTCCGACTGAATTTGAAAGTGT AGAATACTGACAAGTTAAACGATTGGGGGGTAGGGAGGGGATGTAACATA TTTGTCCCCGTTTGGGAACACGCTTTGTGCAGGGCGAGCGGGGGCACTCT CAAGACACGGAAAGGATGCATCCGAGCATGTATTCCCCGTAACAAGCTCA GGAGTTTTACATGACGCTGATTTGATGCCGTAATAATAGTTTAGTTACAC CACACTCGCCAGAGCATGACCGTTACAAGTTTCATGTGATCTGATTATTT CGTGGCCCCGCGGGCAAAGCTCTGCAAGGCTTTACTTCCTGGGTGCGGAC GAGGCCGGAATCGAGCGGCTGAAAACTCGTGCTTGGTGCCGCCTTGAGGC TCTGTGCGCCGCGTGCCCGCTGCAGCCTTGCAACACCTTATCGGCCTTTT CTCCCAAGGTAAGGCGCAAAGGTCCACCCTCGACACATCTTTGTGCTACG GCTTCCGACGTACTCGCAGCTAGCAAAGAACCGCAGCGATGTTACGCGTT TCGATGTGGAACTGCCTGCAATTTTAAAAAGCGCTGCCCCAGTGATGGAC CAACGCAAATTCCGCTAGTATTTCCATCGTGCACCTCAAGCACACGAGAA ATGTTACCCATGATAATTGGTGGTGATCCTATTTTTTCTCTCCCATCATG ACCCGATCGCAATTTTTTCCCAGAGTGGTCACATACTCCACATGCCCCCC CTTTGGCAAAATGTTATGCGGCCTGCACTTCAGCCTCGACATGATTCATC TGACGTCCGCTTCACGTACAACTCGGTTGAGTGTTTCTCTAGCACGTGGG AGAACGGCGCTAGGATACAAGAACGGGTCGGCGGGATCGACGGACTAGCC TCGGCCGGATTTATCCAGAACCCAGCAACGGGCAAGGTAAAATAATATTC TTCAGGTACGACGGGGTATTAATGTACGAGATGCCAGTCGGCAAAGTCTC GCAAACGTCATGCGTGTGCAAGACACGCTTAAATTGAAGCGCGGCCGGGT GCCGTCAGACATGTATCCCTATCATACGTGAGCGACACGTTGAAACTGAG CCCATTTTTCACGCTCTGTCGTTTCACAGGTGGTACGCGGGGCTTGAAAA ATATTGTTGCGCATGCACGGCGTGACCCTAGGGCTGCATTACATTTTTAT ACTATATCGTACTATTAATAGTATATTTACATCGAAGGGGGGTGAGAGGT TATCTTTGGGATTTTGACGGTGGCCAATCAACGCCCGAGGGTACCAGTTC CACCAAAAGAAAACGCTACCTATTCCGTCCGTGTGGTCAAAACTGTTAAT AGGATGATCTACCCAACCCTCTCCCATCCATTCTTGCGCCGATGTTCTTT CATCAAGATGAGCGATCAGAACGATCGCCAGGACTTGGCGGAGGCGACGC TCGCGGTGGTGGACGTCATGGACCTCGCGGGTTGCGTGGATGCCGCCTTC GCGGAAACGCTTCGCAAGTCGTGCAAGCTTATTTTTTTCCGCGAGCACGA GCCGGAGGGAGATGTACAATCCTTGCTAAGCTTCGAAACCTATTATGGGG GACGCTTTGGTCGCTTCAGCCGCAGAAAACGAGTGACCCCGTCCGTATCG TCTCCAACGACAACATAGCCATCCATCCCTGGGGGAGAGAGAACCCTTGA CCATTAATATTGATAGTAGCTCCTAGAGAGTGTAATGGCCAGGCATCGAA GAAAATGAGTTCTTCGTCTTATGTCCGTGGTTGGGCGGCTTCGAAGCCCA CGTAATGTTTTACACAGAAAAACGTCACAGCCATGCATTCTCCATTCAAT TCTGGATATGCCTCGACTAACACCGTCTGTATCGAAGGTAACTTCACTGA AAACAACACTAGTTCCAGTTCGACGAGCGAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1122:171222..179753+

>mRNA_F-serratus_M_contig1122.1128.1 ID=mRNA_F-serratus_M_contig1122.1128.1|Name=mRNA_F-serratus_M_contig1122.1128.1|organism=Fucus serratus male|type=CDS|length=5286bp|location=Sequence derived from alignment at F-serratus_M_contig1122:171222..179753+ (Fucus serratus male)
ATGGTGGTCAAGTTGTCCCGACATCAACTCGCTGAGATCTTGCACCGCGC
GGGCATTGATTCGGATGATGAAATTGAGCTCCAATTGCAAACATTGGATA
AAATGGTGGTCAAGTTGTCCCGACATCAACTCGCTGAGATCTTGCACCGC
GCGGGCATTGATTCGGATGATGAAATTGAGCTCCAATTGCAAACATTGGA
TAAAATAAAGAGCTCGACGATAGACAGCGACAAACTTGACCAGGACCGCC
TGAAGGAACTGCTTTGGCATTATGACGAGGATTTCAAGGAATGGGAGGAG
TCTCCGGAAACGTTTGATTGGGACGGGATCTCTGTTGACCTTGACAAGAG
GGTCACCGCAATCCATATTTCCAACAAGAATTTCTACGGCGAGATTCCTT
CCGGTCTCGGGGAGTTTGCCCATCTTGAGCAATTCCACGCTTCGTGCAAC
CAATTCACCGATAAAGAGCTCGACGATAGACAGCGACAAACTTGACCAGG
ACCGCCTGAAGGAACTGCTTTGGCATTATGACGAGGATTTCAAGGAATGG
GAGGAGTCTCCGGAAACGTTTGATTGGGACGGGATCTCTGTTGACCTTGA
CAAGAGGGTCACCGCAATCCATATTTCCAACAAGAATTTCTACGGCGAGA
TTCCTTCCGGTCTCGGGGAGTTTGCCCATCTTGAGCAATTCCACGCTTCG
TGCAACCAATTCACCGGAGATATTCCAGCAACGATTGGCGGGCTTAGCCG
TCTTACCTCGCTCCGACTGGATCATAATTATCTTTCGGGGAAGCTTTTTA
GCTCGCTGACGCAACTGGCAAATCTCACTGTTCTCGACATGGCACGGAAT
AGAATATCAGGCACAATCCCAACAAAGCTTAGCAGGATGACTTCCCTCCG
TCGGCTGAGTCTGGGAATGAACAAGGCAAGGCATTGCGAGATATTCCAGC
AACGATTGGCGGGCTTAGCCGTCTTACCTCGCTCCGACTGGATCATAATT
ATCTTTCGGGGAAGCTTTTTAGCTCGCTGACGCAACTGGCAAATCTCACT
GTTCTCGACATGGCACGGAATAGAATATCAGGCACAATCCCAACAAAGCT
TAGCAGGATGACTTCCCTCCGTCGGCTGAGTCTGGGAATGAACAAGGCAA
GGCATTGCCTGACTGGGGTGATCCCGAAGCAATTGGAGTCCCTAGCCTTC
CTGGTTGAGCTGCGGATGCCTGAGAACAAGCTGGAGGGCAAGATACCCCC
ACAACTAGGAAACATGAGTTCGTTGCAGGCTCTAGACTTGGCGTCAAATA
ACTTACAGGGCTGCATTCCGGCGAGCTTTGGGAGCTTGACCGATTTGCGC
GAGCTGTGGCTCAGCTGACTGGGGTGATCCCGAAGCAATTGGAGTCCCTA
GCCTTCCTGGTTGAGCTGCGGATGCCTGAGAACAAGCTGGAGGGCAAGAT
ACCCCCACAACTAGGAAACATGAGTTCGTTGCAGGCTCTAGACTTGGCGT
CAAATAACTTACAGGGCTGCATTCCGGCGAGCTTTGGGAGCTTGACCGAT
TTGCGCGAGCTGTGGCTCAGCAACAATAATCTACTAGGAGGAATTCCGGA
GACTTTGGGCAAGCTGACGAATCTTCAAAGCCTCGACTTGTCGTCGAACA
AGCAACAATAATCTACTAGGAGGAATTCCGGAGACTTTGGGCAAGCTGAC
GAATCTTCAAAGCCTCGACTTGTCGTCGAACAAGCTCGCTTCCAGGCTTC
CACGACGGGTCTTTGTCGCGCTGTCCTCGTCACTGGTCTTCCTGAACCTC
AGTCGTAATAAATTTCAGGGCGAGATGCCTCTAGGCGATCTTTTACCACG
CCCGGGCAAAGAAGAGGCCACGAACCAGAAGGAGGCCAAGAACTCAGGCT
CCTGCGAGGAACCAAAAGTTGCCCTGCCCGCCGAGATGACGGGGTCGCCC
ATTTCGTACCTGAACCTCTCCCGCAACAAGCTGACGGGACACATACCGGA
GGAGATAGGAGCCCTGAACTCGCTCACCACTCTAGATCTGTCACACAACA
AATTGTCAGGACAACTCCCTCCGGGAATCGGTGGTTGCTCGGCCTTGCGC
ACGCTTTCGCTATCTCAATGTTGTCTGACGGGTGTACTGGACGGTTCTGA
CGATGGAGCGGTGGGGCCATGGGGCCTTGGGATGTTGACTTTGCTGGAAA
CGTTACGGTTGGACGGCAATGAATTTGAGGGAAACGTGCCAACAGCCTTT
GGGGATCTCACTTGTCTCAAGGTTCTCCAGCTACAGCTCGCTTCCAGGCT
TCCACGACGGGTCTTTGTCGCGCTGTCCTCGTCACTGGTCTTCCTGAACC
TCAGTCGTAATAAATTTCAGGGCGAGATGCCTCTAGGCGATCTTTTACCA
CGCCCGGGCAAAGAAGAGGCCACGAACCAGAAGGAGGCCAAGAACTCAGG
CTCCTGCGAGGAACCAAAAGTTGCCCTGCCCGCCGAGATGACGGGGTCGC
CCATTTCGTACCTGAACCTCTCCCGCAACAAGCTGACGGGACACATACCG
GAGGAGATAGGAGCCCTGAACTCGCTCACCACTCTAGATCTGTCACACAA
CAAATTGTCAGGACAACTCCCTCCGGGAATCGGTGGTTGCTCGGCCTTGC
GCACGCTTTCGCTATCTCAATGTTGTCTGACGGGTGTACTGGACGGTTCT
GACGATGGAGCGGTGGGGCCATGGGGCCTTGGGATGTTGACTTTGCTGGA
AACGTTACGGTTGGACGGCAATGAATTTGAGGGAAACGTGCCAACAGCCT
TTGGGGATCTCACTTGTCTCAAGGTTCTCCAGCTACAGGGCAATGAGTTC
AGCGGATGCCTGCCTTCCAGCCTTGGGCAGCTCGATCAGCTTTGGGCATT
CGTTGTTCGGGACAACCGTCTGTCAGGAAGGGGCAATGAGTTCAGCGGAT
GCCTGCCTTCCAGCCTTGGGCAGCTCGATCAGCTTTGGGCATTCGTTGTT
CGGGACAACCGTCTGTCAGGAAGGGTACCCGAATCCCTCAGTCGGTTGAC
CGGACTACGGTCGCTCCGGCTCGAGGGAAATCCTTCCCTCGAGGGTCCGA
TCCCTGACTACTTAGCAGCTCGGTCGGAGTGTATGGTGAGCGCGGATAAG
ACTGTCCTGGAGGACACTGAGGCTAGAATGCTTGGATCGCGGCTGGAGGA
GTGGTTCCTCGTGCCCCGGAAGGTACCCGAATCCCTCAGTCGGTTGACCG
GACTACGGTCGCTCCGGCTCGAGGGAAATCCTTCCCTCGAGGGTCCGATC
CCTGACTACTTAGCAGCTCGGTCGGAGTGTATGGTGAGCGCGGATAAGAC
TGTCCTGGAGGACACTGAGGCTAGAATGCTTGGATCGCGGCTGGAGGAGT
GGTTCCTCGTGCCCCGGAAGGCATTCCTCAATCTGTCGGAGTTCCCGGGC
CACGTCTCTATTGGACCATCTTTGGTGCGATGTGTGTCCACCGTAGTGGC
TTACGAGTGTCACGTCTTCGTCGATGCCAAGGGCAAAAGGCTCGTCGTCC
GTCGCAGCGAGATCGCATTTTTCTCCCACTGCTGGAATCTTCGGCGACAC
CAGGCATTCCTCAATCTGTCGGAGTTCCCGGGCCACGTCTCTATTGGACC
ATCTTTGGTGCGATGTGTGTCCACCGTAGTGGCTTACGAGTGTCACGTCT
TCGTCGATGCCAAGGGCAAAAGGCTCGTCGTCCGTCGCAGCGAGATCGCA
TTTTTCTCCCACTGCTGGAATCTTCGGCGACACCAGTGTCCCCCAAGTCC
TGCTCTGCTGGAGGGACCCCACTCGGACTCGTCCGATCGCGCCAAGCTCA
GGCACATGAAAGCTTGTCTCGGGGACGCCCCGTCGGACATCCAGTACGTG
TGGCTCGACATGCTCTGCGTCCCGCTGGCAGACCCTAAGCGACGAAGGGC
TTCGGGGCGTTCTTTACCGTTTTTTGTACAAAATGTCCCCCAAGTCCTGC
TCTGCTGGAGGGACCCCACTCGGACTCGTCCGATCGCGCCAAGCTCAGGC
ACATGAAAGCTTGTCTCGGGGACGCCCCGTCGGACATCCAGTACGTGTGG
CTCGACATGCTCTGCGTCCCGCTGGCAGACCCTAAGCGACGAAGGGCTTC
GGGGCGTTCTTTACCGTTTTTTGTACAAAACTCTGCAAGGCTTTACTTCC
TGGGTGCGGACGAGGCCGGAATCGAGCGGCTGAAAACTCGTGCTTGGTGC
CGCCTTGAGGCTCTGTGCGCCGCGTGCCCGCTGCAGCCTTGCAACACCTT
ATCGGCCTTTTCTCCCAAGCTCTGCAAGGCTTTACTTCCTGGGTGCGGAC
GAGGCCGGAATCGAGCGGCTGAAAACTCGTGCTTGGTGCCGCCTTGAGGC
TCTGTGCGCCGCGTGCCCGCTGCAGCCTTGCAACACCTTATCGGCCTTTT
CTCCCAAGCCTCGACATGATTCATCTGACGTCCGCTTCACGTACAACTCG
GTTGAGTGTTTCTCTAGCACGTGGGAGAACGGCGCTAGGATACAAGAACG
GGTCGGCGGGATCGACGGACTAGCCTCGGCCGGATTTATCCAGAACCCAG
CAACGGGCAAGCCTCGACATGATTCATCTGACGTCCGCTTCACGTACAAC
TCGGTTGAGTGTTTCTCTAGCACGTGGGAGAACGGCGCTAGGATACAAGA
ACGGGTCGGCGGGATCGACGGACTAGCCTCGGCCGGATTTATCCAGAACC
CAGCAACGGGCAAGATGAGCGATCAGAACGATCGCCAGGACTTGGCGGAG
GCGACGCTCGCGGTGGTGGACGTCATGGACCTCGCGGGTTGCGTGGATGC
CGCCTTCGCGGAAACGCTTCGCAAGTCGTGCAAGCTTATTTTTTTCCGCG
AGCACGAGCCGGAGGGAGATGTACAATCCTTGCTAAGCTTCGAAACCTAT
TATGGGGGACGCTTTGGTCGCTTCAGCCGCAGAAAACGAGTGACCCCGTC
CGTATCGTCTCCAACGACAACATAGATGAGCGATCAGAACGATCGCCAGG
ACTTGGCGGAGGCGACGCTCGCGGTGGTGGACGTCATGGACCTCGCGGGT
TGCGTGGATGCCGCCTTCGCGGAAACGCTTCGCAAGTCGTGCAAGCTTAT
TTTTTTCCGCGAGCACGAGCCGGAGGGAGATGTACAATCCTTGCTAAGCT
TCGAAACCTATTATGGGGGACGCTTTGGTCGCTTCAGCCGCAGAAAACGA
GTGACCCCGTCCGTATCGTCTCCAACGACAACATAG
back to top