mRNA_F-serratus_M_contig1122.1120.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1122.1120.1
Unique NamemRNA_F-serratus_M_contig1122.1120.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: D7G872_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G872_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.040e-27
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 2 
Query:   20 QGGLFYGLERYPWETAPMYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPEGFLNTEPAS-CAC 256
            QGG+FYGLERY WE+ PMY+LVG VKLLAIAC VQ+GFRGGFIFPLFFAGAS GR L  + D +L  G +   PA  C C
Sbjct:  936 QGGVFYGLERYQWESGPMYLLVGLVKLLAIACTVQSGFRGGFIFPLFFAGASFGRALLSITDDVLAPGLVTASPALLCMC 1015
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A2T2VXU5_9CYAN (Voltage-gated chloride channel (Fragment) n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T2VXU5_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 7.710e-9
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 2 
Query:   71 MYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPE-GFLNTEPA-SCACVSRPVSTPLSCELRS 301
            M +L+G  K+LAI+C + +GFRGGFIFPLF+ GA++G  + +    + P  G + T  A + A    P+ST +   + S
Sbjct:   31 MLLLIGLAKMLAISCTLHSGFRGGFIFPLFYIGAAVGLAIALGFPQVHPTIGMVCTMAAVNVAITKTPISTTVILSVLS 109
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A2T2RT36_9CYAN (Voltage-gated chloride channel n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RT36_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.050e-8
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   71 MYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPE-GFLNTEPA-SCACVSRPVST 277
            + +++   K+LAIAC V +GFRGGFIFPLFF GAS+G  + + +  I P  G L    A + A    PVST
Sbjct:  353 LLLMIALAKMLAIACTVHSGFRGGFIFPLFFVGASVGLAISLAVPQIHPTMGMLCMMAALNVAITKTPVST 423
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A7S2ECV6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ECV6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.720e-8
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:   35 YGLERYPWETAPMYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVL 202
            YGL  +  +TA   ++VGF KL+AI+  V  G+RGGFIFP F AGA++GR L  V+
Sbjct:  388 YGLIGFEMDTAWKCLIVGFAKLVAISFTVAGGYRGGFIFPFFAAGAALGRALQAVV 443
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: K0T3P6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3P6_THAOC)

HSP 1 Score: 62.0 bits (149), Expect = 2.820e-8
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:   38 GLERYPWETAPMYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILP 217
            GL  +  +T    ++ GF KL+AI+  V  GFRGGFIFP F AGA+ GR L  V  SI P
Sbjct:  506 GLIGFEMDTCAKCLITGFAKLIAISFTVAGGFRGGFIFPFFTAGAAFGRALCFVFPSISP 565
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: I0YW15_COCSC (Clc chloride channel n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YW15_COCSC)

HSP 1 Score: 61.2 bits (147), Expect = 5.350e-8
Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 2 
Query:   26 GLFYGLERYPWETAPMYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPE--GFLNTEPASCACVSRPVSTPLSCELRSPRRSS 316
            GLF G    P      Y+L+GFVKLLAI+  V +GFRGGFIFP FFAG + G  +   + SI P    F+   P    C++  V    S   R+P  S+
Sbjct:  382 GLFMGGHYGPGT----YVLIGFVKLLAISITVLSGFRGGFIFPTFFAGTAFGHAIFRGITSI-PHITPFIGGAPPILFCMTVAVGLETSI-TRTPLAST 474
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A5J4XNN3_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XNN3_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 7.090e-8
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  193 HGPRLHPARGLPEHGASLMCVCFAAGLNTAIMRTPFASPLILAALSGVHSATTPAVCASLTSLFITRFHKFFDAQRDRADI 435
            H P +   + LP+    ++ +  AAGLNTAI RTPFA+ LIL ALSG      P + ++L +LF+T    F  +QRDR DI
Sbjct:  422 HIPGMPFLQNLPD---VVVAMTMAAGLNTAITRTPFATSLILTALSGHPEVAVPCLASALVALFMTLHLPFIMSQRDRRDI 499
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A2W6Z964_9CYAN (Voltage-gated chloride channel n=5 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2W6Z964_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 8.920e-8
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 2 
Query:   71 MYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPE-GFLNTEPA-SCACVSRPVSTPLSCELRS 301
            M +++G  K+LAI+C + +GFRGGFIFPLF+ GA++G  + +    + P  G + T  A + A    P+ST +   + S
Sbjct:  321 MLLMIGLAKMLAISCTLHSGFRGGFIFPLFYIGAAVGLAIALGFPQVHPTIGMVCTMAAVNVAITKTPISTTVILSVLS 399
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A7S2UY77_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY77_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.040e-8
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 2 
Query:   38 GLERYPWETAPMYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPEGFLNTEPASCACVSRPVSTPLS 286
            GL  +  ++A    LVG  KLLAI+  V  G+RGGFIFP F AGA+ GR L     S+       + P +C C+S  ++  ++
Sbjct:   34 GLIDFEMDSAFKCFLVGVFKLLAISFTVTGGYRGGFIFPFFSAGAAFGRALTFCFPSL-------SVPYACLCLSAGINVAIT 109
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BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Match: A0A2W7CNE5_9CYAN (Voltage-gated chloride channel n=1 Tax=Pseudanabaena sp. TaxID=1153 RepID=A0A2W7CNE5_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 1.180e-7
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:   71 MYMLVGFVKLLAIACAVQAGFRGGFIFPLFFAGASIGRGLHMVLDSILPEGFLNTEPASC--ACVSRPVSTPL 283
            + +L+  VK+  ++ ++ +GFRGGFIFP+FF GA+IG  L +++ SI P   +    AS   A +  PVS P+
Sbjct:  299 LLILIAIVKMFTVSLSLHSGFRGGFIFPIFFIGAAIGMALSLLIPSIPPSVIMLCMMASVTVAVMKTPVSIPI 371
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1122.1120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G872_ECTSI1.040e-2767.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2T2VXU5_9CYAN7.710e-939.24Voltage-gated chloride channel (Fragment) n=3 Tax=... [more]
A0A2T2RT36_9CYAN1.050e-846.48Voltage-gated chloride channel n=1 Tax=Cyanobacter... [more]
A0A7S2ECV6_9STRA2.720e-851.79Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
K0T3P6_THAOC2.820e-850.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
I0YW15_COCSC5.350e-841.41Clc chloride channel n=1 Tax=Coccomyxa subellipsoi... [more]
A0A5J4XNN3_9CHLO7.090e-844.44Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A2W6Z964_9CYAN8.920e-837.97Voltage-gated chloride channel n=5 Tax=Cyanobacter... [more]
A0A7S2UY77_9STRA9.040e-838.55Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A2W7CNE5_9CYAN1.180e-739.73Voltage-gated chloride channel n=1 Tax=Pseudanabae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1122contigF-serratus_M_contig1122:1146..2158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D7G872
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Voltage gated chloride channel
EggNOG OGs2S9DC@2759,COG0038@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size471
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.5992167-CDS-F-serratus_M_contig1122:1145..12811622929017.5992167-CDS-F-serratus_M_contig1122:1145..1281Fucus serratus maleCDSF-serratus_M_contig1122 1146..1281 +
1690962667.9141479-CDS-F-serratus_M_contig1122:1145..12811690962667.9141479-CDS-F-serratus_M_contig1122:1145..1281Fucus serratus maleCDSF-serratus_M_contig1122 1146..1281 +
1622929017.6194644-CDS-F-serratus_M_contig1122:1823..21581622929017.6194644-CDS-F-serratus_M_contig1122:1823..2158Fucus serratus maleCDSF-serratus_M_contig1122 1824..2158 +
1690962667.9309535-CDS-F-serratus_M_contig1122:1823..21581690962667.9309535-CDS-F-serratus_M_contig1122:1823..2158Fucus serratus maleCDSF-serratus_M_contig1122 1824..2158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1122.1120.1prot_F-serratus_M_contig1122.1120.1Fucus serratus malepolypeptideF-serratus_M_contig1122 1146..2158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1122.1120.1

>prot_F-serratus_M_contig1122.1120.1 ID=prot_F-serratus_M_contig1122.1120.1|Name=mRNA_F-serratus_M_contig1122.1120.1|organism=Fucus serratus male|type=polypeptide|length=157bp
MSNLNVPGRPILWPGTVSLGDRPDVHARRICEAAGDRMRRASWFQRRLHL
PAFLRRGFNRSWSPHGPRLHPARGLPEHGASLMCVCFAAGLNTAIMRTPF
ASPLILAALSGVHSATTPAVCASLTSLFITRFHKFFDAQRDRADIKFVGN
LPPISRP
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mRNA from alignment at F-serratus_M_contig1122:1146..2158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1122.1120.1 ID=mRNA_F-serratus_M_contig1122.1120.1|Name=mRNA_F-serratus_M_contig1122.1120.1|organism=Fucus serratus male|type=mRNA|length=1013bp|location=Sequence derived from alignment at F-serratus_M_contig1122:1146..2158+ (Fucus serratus male)
ATGTCAAACTTGAACGTCCCAGGGAGGCCTATTCTATGGCCTGGAACGGT
ATCCTTGGGAGACCGCCCCGATGTACATGCTCGTCGGATTTGTGAAGCTG
CTGGCGATCGCATGCGCCGTGCAAGCTGGTTTCAGAGTAAGTCATTTACT
ATAGGGTGGAGACTATGTTGGGCAGCAAGCAGGCACATACTGCCCTGGCG
AAAAAATGAAGTAGATACGGATCATATGCCGCACTCTAGAACATTGGGGC
GTACCCCCTGCACTGGGGCGCGCCTCCCTCTTGAAGGGGGTAGGGCGCAG
CGCAATGGTAGGAAGGTACGCCGCAGTGCAAGAAGGGGGCAGGGTGAAGT
ATAGGAGGGACGCGGCAGCGTAAGAGGGGGGGACGCCGCAGTCTAGGGTA
TACGTCCAAGTGCACGGGGTACGCCCCAATGCCGTTTTACTACAATCATA
TTATCGCCGCAGTGTAGGATGTACGCCCATGTGTAGGAAGTACAACCTAA
TAATGTACTATGCTGAATTATGCAGCTATAACATTTATAACCCTTTTCTA
CAGATAATTTGTTTGAGGTGGTACATTCAATGCACGAGAACTATTAATAA
CACCTCCAGTATTGCCGCTAGTGCAACCGGTTCAGGGCTAATGACACTTT
GTGAACGACGCATTGCCCACGACGACAGGGAGGCTTCATCTTCCCGCTTT
TCTTCGCCGGGGCTTCAATAGGTCGTGGTCTCCACATGGTCCTCGACTCC
ATCCTGCCCGAGGGCTTCCTGAACACGGAGCCAGCCTCATGTGCGTGTGT
TTCGCGGCCGGTCTCAACACCGCTATCATGCGAACTCCGTTCGCCTCGCC
GCTCATCCTGGCAGCGCTTTCAGGCGTTCACAGCGCAACCACCCCAGCCG
TATGCGCCTCTCTGACTTCTCTATTTATCACTCGCTTCCATAAGTTCTTT
GACGCCCAAAGGGACCGCGCGGACATCAAGTTCGTGGGTAACTTGCCACC
TATATCGCGCCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1122:1146..2158+

>mRNA_F-serratus_M_contig1122.1120.1 ID=mRNA_F-serratus_M_contig1122.1120.1|Name=mRNA_F-serratus_M_contig1122.1120.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig1122:1146..2158+ (Fucus serratus male)
ATGTCAAACTTGAACGTCCCAGGGAGGCCTATTCTATGGCCTGGAACGGT
ATCCTTGGGAGACCGCCCCGATGTACATGCTCGTCGGATTTGTGAAGCTG
CTGGCGATCGCATGCGCCGTGCAAGCTGGTTTCAGAATGTCAAACTTGAA
CGTCCCAGGGAGGCCTATTCTATGGCCTGGAACGGTATCCTTGGGAGACC
GCCCCGATGTACATGCTCGTCGGATTTGTGAAGCTGCTGGCGATCGCATG
CGCCGTGCAAGCTGGTTTCAGAGGAGGCTTCATCTTCCCGCTTTTCTTCG
CCGGGGCTTCAATAGGTCGTGGTCTCCACATGGTCCTCGACTCCATCCTG
CCCGAGGGCTTCCTGAACACGGAGCCAGCCTCATGTGCGTGTGTTTCGCG
GCCGGTCTCAACACCGCTATCATGCGAACTCCGTTCGCCTCGCCGCTCAT
CCTGGCAGCGCTTTCAGGCGTTCACAGCGCAACCACCCCAGCCGTATGCG
CCTCTCTGACTTCTCTATTTATCACTCGCTTCCATAAGTTCTTTGACGCC
CAAAGGGACCGCGCGGACATCAAGTTCGTGGGTAACTTGCCACCTATATC
GCGCCCTGGAGGCTTCATCTTCCCGCTTTTCTTCGCCGGGGCTTCAATAG
GTCGTGGTCTCCACATGGTCCTCGACTCCATCCTGCCCGAGGGCTTCCTG
AACACGGAGCCAGCCTCATGTGCGTGTGTTTCGCGGCCGGTCTCAACACC
GCTATCATGCGAACTCCGTTCGCCTCGCCGCTCATCCTGGCAGCGCTTTC
AGGCGTTCACAGCGCAACCACCCCAGCCGTATGCGCCTCTCTGACTTCTC
TATTTATCACTCGCTTCCATAAGTTCTTTGACGCCCAAAGGGACCGCGCG
GACATCAAGTTCGTGGGTAACTTGCCACCTATATCGCGCCCT
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