mRNA_F-serratus_M_contig112.1110.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig112.1110.1
Unique NamemRNA_F-serratus_M_contig112.1110.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig112.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig112contigF-serratus_M_contig112:685847..689990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size293
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig112.1110.1prot_F-serratus_M_contig112.1110.1Fucus serratus malepolypeptideF-serratus_M_contig112 686177..689990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.1593795-UTR-F-serratus_M_contig112:685846..6859191622929015.1593795-UTR-F-serratus_M_contig112:685846..685919Fucus serratus maleUTRF-serratus_M_contig112 685847..685919 -
1690962666.6243012-UTR-F-serratus_M_contig112:685846..6859191690962666.6243012-UTR-F-serratus_M_contig112:685846..685919Fucus serratus maleUTRF-serratus_M_contig112 685847..685919 -
1622929015.251936-UTR-F-serratus_M_contig112:686109..6861761622929015.251936-UTR-F-serratus_M_contig112:686109..686176Fucus serratus maleUTRF-serratus_M_contig112 686110..686176 -
1690962666.6404243-UTR-F-serratus_M_contig112:686109..6861761690962666.6404243-UTR-F-serratus_M_contig112:686109..686176Fucus serratus maleUTRF-serratus_M_contig112 686110..686176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.2808902-CDS-F-serratus_M_contig112:686176..6862461622929015.2808902-CDS-F-serratus_M_contig112:686176..686246Fucus serratus maleCDSF-serratus_M_contig112 686177..686246 -
1690962666.6530674-CDS-F-serratus_M_contig112:686176..6862461690962666.6530674-CDS-F-serratus_M_contig112:686176..686246Fucus serratus maleCDSF-serratus_M_contig112 686177..686246 -
1622929015.2936068-CDS-F-serratus_M_contig112:689907..6899901622929015.2936068-CDS-F-serratus_M_contig112:689907..689990Fucus serratus maleCDSF-serratus_M_contig112 689908..689990 -
1690962666.662828-CDS-F-serratus_M_contig112:689907..6899901690962666.662828-CDS-F-serratus_M_contig112:689907..689990Fucus serratus maleCDSF-serratus_M_contig112 689908..689990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig112.1110.1

>prot_F-serratus_M_contig112.1110.1 ID=prot_F-serratus_M_contig112.1110.1|Name=mRNA_F-serratus_M_contig112.1110.1|organism=Fucus serratus male|type=polypeptide|length=51bp
EKSDRTYCKPSESSHPLTQGGENVKTFRCLTGSIIESVHFLGAFFEEQEI
*
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mRNA from alignment at F-serratus_M_contig112:685847..689990-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig112.1110.1 ID=mRNA_F-serratus_M_contig112.1110.1|Name=mRNA_F-serratus_M_contig112.1110.1|organism=Fucus serratus male|type=mRNA|length=4144bp|location=Sequence derived from alignment at F-serratus_M_contig112:685847..689990- (Fucus serratus male)
GAAAAATCGGACCGCACCTACTGTAAACCTTCTGAGAGCAGCCATCCACT
CACTCAAGGAGGGGAAAATGTCAAAACGTTTAGGTGGGAACATCGGCTGT
AAGGACAATTTTTCTTGGATTAAACGGGTTCCCGATGTAAGTGTTACAGC
TCATAGGATCAAAAGTATAATAATATTGATTGTATTAGGGAGAAAACCCT
CCTTACGCACGCATGTTGATCGCCATACATTCAGGCACACCACTCAGCAG
GAGTTTCATCTGCGTTCATATTATTCTTAAAAACGGCAGAATAAGGCCGA
CTCTTATGCATACGAAAAACTTATACGAAAATGGACCAAATCCGTTTTTT
TCGGGTTTTTCCAATCTTATGCATACGAGAATGGTCCAGATTCGTATGGC
CAAATCCGTTTGAGCTTTTCGTAACAGGACTACAAATGGATTTGGTGCCC
AAATCCGTTTGCTTCAGCGATACGAATCTGCAAACGGATTTCGCACGCGG
TGCAACTATTACTATATTTGGCCAATGACGCTGCTAGAACTCAAATAATG
ACTACCTCTGCCAGGAATGCGGCGGCTATCGCCAAGGCAAGGGTAGTATG
AGTATGGTCGAATCGAGGTCCATAGTTTTTTACTCAAGAGAAGAGAGAGG
ATGCTGGCGGCAAGGTCCGCGGTGCTTGAGATGCTCGAAGTTAAGGAAGA
TAGGCGGTTTGGGAGGCTTGATGATGATGACTCCGCGAAGATCAAGTGGA
TGTGGCGCGTGTATCCCCGAGTTGACTACGCGTATCTTTTATAACCGCCT
TCTGTCTTCGGATGATACGTACCGGAAGCAGATTTTCCCTCATCTGCGGC
GCATGACGACGCGACCAGCTGTTCCAGACTACAAAAGCTTTCACAGTTGC
CGTTGAACTCGGCAAAGCGCTTGGTACACCATGACCTCCGTCTAACGATG
CGACATGCTGCGTGCATTCGTTGTGGTGGAATTATGTCTCGATGCATCCG
TTCGCCCGAGTTTGATATAATTATCGTCAGGGCAACGTACTGTATCCGAG
TACAGCAGTACATAGATAGGCATAATAGGTACATAGACTGAATCGAAGAC
GTTTTCGTGAAAACCGTACCAGCAGACGAACCTGCTGCAGTTCCGGGGAG
CCCCGCCCGACGAGTATCGTAACCGCACGCATCAACAAAATTTACCTCGA
CCCTTGATCTACTGGAATAGTGGAGCTAGTTTAGAGCCGTGGAATTTTGG
CAGCCAGCAAACAACAGCAACGGTGCGGTATCTATCTGTAGTTCTCGACG
CAGTGTACAAACTTAGTGTAGCCGGGCTGTGCTCGTCGTGTTCATCCACC
GCCAATGCGCTTTACTGGTAAATACAGTAGTACTACTACTGTAGAGGTCC
AGCTCGTCTGCTCTTTCTTGCATATCTCACCCTCTTATTTTGAAAAATTG
GTGGCCGTTTCCATTCGGCAATTTCATTGCTGTACCTCACTATTAATAGT
ATAGGCAAGCCTGTCCTAGTTTGTCGAAAACATAGCAAACCAAAACCACC
GTATGCATAAGATAGCCTTCGCTCATATTTTTGGTCCCGAAAAAAAAAAA
CGGATTTGGTCCATTTTCGTATAAGTTTTTCGTATGCATAAGAGTCGGCC
TAAGAAGCACAAAAACACCAGATGATGAGCACGATTGTCGTATTATTAGC
ATCGCAATAAATTTTACAATTCACTACGATAGGTCCGAAGGGGTCACGAG
AAAGGTGCACAGGGCCGTCAGAAACCTATCGGTTTTACATACTTGCCCAA
ACGTTTGAGATTTTCGATACAAATTTCAGTGCATACCCGGTTGATCCAGA
CTCTCTGCTGAAAGTAGTGACCATACATACATACATACATACGTAGTAGG
CGTTCCAAAATTTTTGGGCGCTTTCTCGCCTATACTCGTACTAAAACCAA
GTCAAAAACACGTCATGAGCGTGGGGGTTTCACTAAATATTAAAAATGGC
GTGTTTGAGAGGGCTCGCACACATTGCCGGGTTTAAAACCGCATACTATC
ATCAGTAATCTAGTCGAGGTACTGCATAATATATGTATATATACCAGGTA
TATTATAGGGCTCGCGTGTGTCTGCAGAGTGTGGTACAAGAAAAAAAGGA
TACCACGACACTTTATGGTCATCGCATATAGTAGAGTATGGGTCAACCGG
GTAAGGTTGCTAATCCTTCTCGTGGTCAGCTGAACAGAGAAAATGAATGT
CCCCCTGTCCCCGTGCGTGCCTGTGAATTTGGTCTCGCCAGACGGGTTCA
GCCGTCCCGTCCCGCGTCAGCCTGCTCATTCATCTCCATACTCAGGCTGA
AACTGGTGCTTACTTACAGGATTCCTCCCGAGTTCCGCGGCGGCGTCCAT
TTATGAAACCGCCACACGCCATCGGGTCAGTCCCAAATTTATCGGGTCAC
GCAATTGCGTACTGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGGGC
CAGTAAGCCCCGAAGTAGTTCCGACCGAACACTGTGTGTGTGTGTTGTGT
GTGTGTGTGTTTTCTTCCCATCTATTCTGGGCATCAATAGACGGACCAGC
CCGGGTCACACAGGAGGAAGGTCACACAGGATTTCTCATCCACCGTCCTT
CTGCGGTGCGTGCCTTAATTTTTATCGCGAGAAGGATTCAGCCATTCCTT
TCCCTCGTCGACCGTGAAGTCGAGTTTTGTGTACTAACGAACCAACCGTT
CTCCACCAGTTGGGCATTTTTTTATTTTTTTATTTTTTTTAGTGAGAAAA
ATACCGTTTGCCGGGATTGAACTCGCGTCCCAGCTTGTCAGAGGGTTACG
AGGTACCTCTGAGCTACCGGGGCGACTGCACATCTTCTCATAAATTGAAC
AATATTATCCGTAATAATAAGTACTACAATACAGTACATTATAGAACTAA
ACAGGCATAGTATTATTACGGTTTCTGCGTTGTTCCCTGTTTTTTCTCTC
CGACGACCGTATTCCCGGAGTTCTCATAAAAAAAAAACAGAGCGCGCCAA
GACTTTCTGAGCATTCCCCAATCAGGGGGGGGGAATGTCAAAACGTTTAG
GTTGGATCATAGGCGGCAAATACAAAACCTCTTCATGGCATTTAAAGGGT
TTCCCTATTATGGTAGTAACATTGGGTCAACAGTATCATGTCGGGGACCA
CCGTTTGTGCGGTTTGGTTTGGTTGTCCGTCTATCTCGTGACTACGGCTG
CTGGATTCGTAGCGGATGACCAGTGGCAAAAGAAAAAGAAAAGAAAAGGT
ACTACTCTGTCAAGCACGAGCGGTGCCTCTACTACAAGTAAAACAGAACA
GTACTACTTGCTTTTTTAGAACAAATGTTTTTTGCTTCTTACATTTACAT
AATAATCATACGTCAATAATATGTCATTAATATGTCAACAATATGTCAAT
AGCATGTCAATATTATGTCAATAATATGTCAATAGTAGGTCAATATGTCA
GCATCGTACGAGTACAAGTACCAGCACTAACGAGCTCTTCGCAGTTATTT
ATTTAACCGCGTTGACTTTTTATTTCTATTTGATGCTAGAATCAAACTAC
TTACTGGTACTGTACAAATACAAAACCATACAATAATACAGTACAAAACG
TGCAATAAAAAACAATCACTCCATCTCCGCGCTGCTGCCTTCAAGAACAC
GGACGGGCGAGTATCCGAACGCCGCCTTTCCACGTACACGGCAGGTGTTT
GACGGGCAGTATCATCGAAAGTGTTCATTTCCTGGGGGCTTTCTTTGAGG
AACAAGAAATATAACAAAGTAGTTGGGGCCCCGTGCACACCCGACCCAGC
CGCTCGAGCACTCGCAAACTTGTCTCGCCAGGTGCAGACGACGCTGCTTT
CAAAAACGAGAAACGCACCTGGTACAATTACTACCTCGTACAAACTAAAT
GACGTTTGTTTCCGTTCATAGTCATAATAACGACTGACAAGTATTGAGCG
AGGAACCCAGTTCTTTCCGCTTGCCTCTTACTTCCTTGTGTGATCTCCCA
CTGCTCTTCGGCTAATTCCAGGTGAACGGTGTCTGTCGCGTACTTGGATA
ATATGAAGATTCCACATCATCACCATGGTCCTCCTCTGTTCCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig112:685847..689990-

>mRNA_F-serratus_M_contig112.1110.1 ID=mRNA_F-serratus_M_contig112.1110.1|Name=mRNA_F-serratus_M_contig112.1110.1|organism=Fucus serratus male|type=CDS|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig112:685847..689990- (Fucus serratus male)
GAAAAATCGGACCGCACCTACTGTAAACCTTCTGAGAGCAGCCATCCACT
CACTCAAGGAGGGGAAAATGTCAAAACGTTTAGGAAAAATCGGACCGCAC
CTACTGTAAACCTTCTGAGAGCAGCCATCCACTCACTCAAGGAGGGGAAA
ATGTCAAAACGTTTAGGTGTTTGACGGGCAGTATCATCGAAAGTGTTCAT
TTCCTGGGGGCTTTCTTTGAGGAACAAGAAATATAAGTGTTTGACGGGCA
GTATCATCGAAAGTGTTCATTTCCTGGGGGCTTTCTTTGAGGAACAAGAA
ATATAA
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