mRNA_F-serratus_M_contig1118.1099.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: D7FJW7_ECTSI (ENDO3c domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW7_ECTSI) HSP 1 Score: 176 bits (447), Expect = 2.100e-47 Identity = 88/159 (55.35%), Postives = 111/159 (69.81%), Query Frame = 1
Query: 22 QTTRKEKRKRCANGEDISGMSQRELRALRAKWRRMADPAANAEDQRFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVGPALGAILCMVFDSWEADDAATS 498
+T K ++K+ E++ +S ELR R +WR MAD A EDQRFQVLV +L S A VV +GL +L+ R GLTA MA + Q+DLA +LR VHWNKAK+KH+RESA+ I+RRH G+VPRR+ +LLALPGVGPAL IL VFDSW+ DD S
Sbjct: 61 RTGEKPEKKKGCKAENVGELSPEELRVFRKRWRGMADRGACVEDQRFQVLVGAVLSSRAQVSVVDEGLSRLRARSGGLTAAEMAEVGQDDLADVLRHVHWNKAKAKHIRESASIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDKDDKTES 219
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A6H5L0N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N6_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.620e-22 Identity = 59/131 (45.04%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 211 VSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNK---------------------------------------AKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVGPALGAILCMVFDSWEADD 486
V +GL +L+ R GLTA MA + Q+DLA +LR VHWNK AK+KH+RESA I+RRH G+VPRR+ +LLALPGVGPAL IL VFDSW+ DD
Sbjct: 33 VDEGLSRLRARSGGLTAAEMAEVAQDDLADVLRHVHWNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAKHIRESAGIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDD 163
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A485LLB6_9STRA (Endonuclease III homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLB6_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 8.980e-9 Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 154 QRFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVGPAL 441
+RF VLVA +L S V + + +L R GLT AM AID+++LA ++R V + K+K++RE+ A + ++G +P L+ALPGVGP +
Sbjct: 146 RRFHVLVACMLSSQTKDQVNAAAMGRL--RAHGLTVDAMLAIDEKELAALIRPVGFFNNKAKYIRETCAILKAQYGSDIPDTYDALVALPGVGPKM 239
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A0S4JYX2_BODSA (Endonuclease III homolog n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JYX2_BODSA) HSP 1 Score: 66.6 bits (161), Expect = 1.440e-8 Identity = 32/116 (27.59%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 121 RMADPAANAEDQRFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVGPALGAILCMVFD 468
R+ DP A +QR+Q+L++L+L S V + +++LK + G K + + ++ LA++L V + K+K ++++ I+ R VP L++ PG+GP + + D
Sbjct: 39 RLYDPLATRSNQRYQILLSLMLSSQTRDQVTAAAMDRLKALKGGCIPKTINDLQEQKLAELLHPVSFYNNKAKFIKKTTLEIIERFDSEVPSEYDTLVSFPGLGPKMVHLFLQAAD 154
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A662Y8N8_9STRA (Endonuclease III homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8N8_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 9.430e-7 Identity = 35/103 (33.98%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 157 RFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGI----VPRRKGDLLALPGVGPALGAIL 453
RF VL+A ++ S V + + +L E GLT ++M AIDQ++LA ++R V + K+K+++++AA + ++ G +P L+ALPGVGP + ++
Sbjct: 133 RFHVLIAAMMSSQTKDPVNAAAMGRLI--EHGLTVESMLAIDQQELALLIRPVGFFNNKAKYIKQTAAILTKQADGAAVVDIPNTYEGLIALPGVGPKMATLV 233
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A421EUG4_9STRA (ENDO3c domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EUG4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.020e-6 Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 145 AEDQRFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGI----VPRRKGDLLALPGVGPALGAIL 453
A +RF VL+A ++ S V + + +L GLT ++M AIDQ++LA ++R V + K+K+++++ A + ++ G +P L+ALPGVGP + ++
Sbjct: 11 AHVRRFHVLIAAMMSSQTKDPVNAAAMGRLINH--GLTMESMLAIDQQELALLIRPVGFFNYKAKYIKQTVAILTKQAEGANIVDIPNTYEGLIALPGVGPKMATLV 115
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A0R2D4Y5_9LACO (Endonuclease III n=2 Tax=Loigolactobacillus rennini TaxID=238013 RepID=A0A0R2D4Y5_9LACO) HSP 1 Score: 59.3 bits (142), Expect = 2.180e-6 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 160 FQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVGPALGAIL 453
FQ L+A+LL + A V+ KL P + MAA + L Q + S+ + K+KH++ ++ A++ GG+VP+R+ DL+ LPGVG A++
Sbjct: 31 FQYLIAVLLSAQATDISVNKVTPKLFSDFPD--PQTMAAASEAALRQDIHSIGLYRNKAKHMKAASQALVENFGGVVPKRRQDLVTLPGVGRKTAAVV 126
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A519HKT2_9GAMM (Endonuclease III (Fragment) n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A519HKT2_9GAMM) HSP 1 Score: 56.2 bits (134), Expect = 5.590e-6 Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 160 FQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVG 432
F++L A+LL + A V+ KL T A+ A+ Q+ L +R++ ++K+KH+ E+ ++ HGG+VPR + L ALPGVG
Sbjct: 30 FELLAAVLLSAQATDVSVNKATRKLYP--VANTPAAILALGQDGLEHYIRTIGLYRSKAKHLLETCRMLVELHGGVVPRTREALQALPGVG 118
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A3F2RMS3_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMS3_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.750e-6 Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 145 AEDQRFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGI----VPRRKGDLLALPGVGPALGAIL 453
A +RF VL+A ++ S V + + +L GLT ++M AIDQ++LA ++R V + K+K+++++ A + ++ G +P L+ALPGVGP + ++
Sbjct: 110 AHVRRFHVLIAAMMSSQTKDPVNAAAMGRLINH--GLTMESMLAIDQQELALLIRPVGFFNYKAKYIKQTVAILTKQAEGANIVDIPNTYEGLIALPGVGPKMATLV 214
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Match: A0A7V9H0G5_9ACTN (Endonuclease III n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9H0G5_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 6.550e-6 Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 151 DQRFQVLVALLLCSHAHAHVVSDGLEKLKKREPGLTAKAMAAIDQEDLAQILRSVHWNKAKSKHVRESAAAILRRHGGIVPRRKGDLLALPGVG 432
D FQ+LV +L + V+ +L P A AMAA D+ DL I++S + +AK+ + + + +L RHGG VP R DL+ALPGVG
Sbjct: 31 DDPFQLLVVTVLSAQTTDRRVNAVRPRLFAAYPD--AVAMAAADRSDLEAIIQSTGFFRAKADTLLKLSVVLLERHGGDVPPRLVDLVALPGVG 122 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1118.1099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1118.1099.1 >prot_F-serratus_M_contig1118.1099.1 ID=prot_F-serratus_M_contig1118.1099.1|Name=mRNA_F-serratus_M_contig1118.1099.1|organism=Fucus serratus male|type=polypeptide|length=143bp MSQRELRALRAKWRRMADPAANAEDQRFQVLVALLLCSHAHAHVVSDGLEback to top mRNA from alignment at F-serratus_M_contig1118:133682..136528+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1118.1099.1 ID=mRNA_F-serratus_M_contig1118.1099.1|Name=mRNA_F-serratus_M_contig1118.1099.1|organism=Fucus serratus male|type=mRNA|length=2847bp|location=Sequence derived from alignment at F-serratus_M_contig1118:133682..136528+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1118:133682..136528+ >mRNA_F-serratus_M_contig1118.1099.1 ID=mRNA_F-serratus_M_contig1118.1099.1|Name=mRNA_F-serratus_M_contig1118.1099.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig1118:133682..136528+ (Fucus serratus male)back to top |