mRNA_F-serratus_M_contig1118.1098.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1118.1098.1
Unique NamemRNA_F-serratus_M_contig1118.1098.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1118.1098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1118contigF-serratus_M_contig1118:122391..122941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.3781397-UTR-F-serratus_M_contig1118:122390..1224491622929004.3781397-UTR-F-serratus_M_contig1118:122390..122449Fucus serratus maleUTRF-serratus_M_contig1118 122391..122449 +
1690962665.1947043-UTR-F-serratus_M_contig1118:122390..1224491690962665.1947043-UTR-F-serratus_M_contig1118:122390..122449Fucus serratus maleUTRF-serratus_M_contig1118 122391..122449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.3870153-CDS-F-serratus_M_contig1118:122449..1229411622929004.3870153-CDS-F-serratus_M_contig1118:122449..122941Fucus serratus maleCDSF-serratus_M_contig1118 122450..122941 +
1690962665.2052681-CDS-F-serratus_M_contig1118:122449..1229411690962665.2052681-CDS-F-serratus_M_contig1118:122449..122941Fucus serratus maleCDSF-serratus_M_contig1118 122450..122941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1118.1098.1prot_F-serratus_M_contig1118.1098.1Fucus serratus malepolypeptideF-serratus_M_contig1118 122450..122941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1118.1098.1

>prot_F-serratus_M_contig1118.1098.1 ID=prot_F-serratus_M_contig1118.1098.1|Name=mRNA_F-serratus_M_contig1118.1098.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MSSRDDFCEEVYYIQPSVASQNVKGQESCPQRSGDCHTESTESDPGKDDA
SPPLLRMRTTVSKDNGHESTQENQARCPTARGGVAYLDLSHEAILEHGRN
NEDHQHQGGSQTMIAIDSANDTAVPENPFASFTYCGDEGSALMVGVPSAR
KIGHSSGIGQRKKL
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mRNA from alignment at F-serratus_M_contig1118:122391..122941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1118.1098.1 ID=mRNA_F-serratus_M_contig1118.1098.1|Name=mRNA_F-serratus_M_contig1118.1098.1|organism=Fucus serratus male|type=mRNA|length=551bp|location=Sequence derived from alignment at F-serratus_M_contig1118:122391..122941+ (Fucus serratus male)
CTTGCGGAGGTCTGTACTAATAAGAAGAATCTTCCACGCAACCTAAGCTT
AGCCACATTATGTCGAGCAGGGATGACTTCTGCGAGGAAGTGTATTACAT
CCAGCCGAGTGTGGCTTCACAGAACGTCAAGGGACAGGAAAGTTGTCCCC
AACGCTCCGGAGACTGTCATACCGAATCTACGGAGTCTGATCCTGGGAAA
GATGATGCGTCTCCACCTCTGCTTAGGATGCGAACCACTGTCAGCAAAGA
CAACGGGCACGAATCTACGCAGGAAAATCAAGCACGCTGCCCGACTGCTC
GTGGGGGAGTCGCTTATCTTGATCTTTCTCACGAAGCAATACTGGAACAT
GGCCGAAATAACGAAGACCACCAGCACCAAGGCGGATCACAAACTATGAT
TGCTATTGATAGTGCTAATGATACTGCTGTCCCGGAAAATCCGTTTGCCT
CTTTTACCTACTGTGGAGACGAAGGAAGCGCGCTGATGGTAGGCGTCCCT
TCCGCCAGGAAGATCGGCCACTCCAGTGGTATTGGGCAGAGGAAGAAGCT
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig1118:122391..122941+

>mRNA_F-serratus_M_contig1118.1098.1 ID=mRNA_F-serratus_M_contig1118.1098.1|Name=mRNA_F-serratus_M_contig1118.1098.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig1118:122391..122941+ (Fucus serratus male)
ATGTCGAGCAGGGATGACTTCTGCGAGGAAGTGTATTACATCCAGCCGAG
TGTGGCTTCACAGAACGTCAAGGGACAGGAAAGTTGTCCCCAACGCTCCG
GAGACTGTCATACCGAATCTACGGAGTCTGATCCTGGGAAAGATGATGCG
TCTCCACCTCTGCTTAGGATGCGAACCACTGTCAGCAAAGACAACGGGCA
CGAATCTACGCAGGAAAATCAAGCACGCTGCCCGACTGCTCGTGGGGGAG
TCGCTTATCTTGATCTTTCTCACGAAGCAATACTGGAACATGGCCGAAAT
AACGAAGACCACCAGCACCAAGGCGGATCACAAACTATGATTGCTATTGA
TAGTGCTAATGATACTGCTGTCCCGGAAAATCCGTTTGCCTCTTTTACCT
ACTGTGGAGACGAAGGAAGCGCGCTGATGGTAGGCGTCCCTTCCGCCAGG
AAGATCGGCCACTCCAGTGGTATTGGGCAGAGGAAGAAGCTGATGTCGAG
CAGGGATGACTTCTGCGAGGAAGTGTATTACATCCAGCCGAGTGTGGCTT
CACAGAACGTCAAGGGACAGGAAAGTTGTCCCCAACGCTCCGGAGACTGT
CATACCGAATCTACGGAGTCTGATCCTGGGAAAGATGATGCGTCTCCACC
TCTGCTTAGGATGCGAACCACTGTCAGCAAAGACAACGGGCACGAATCTA
CGCAGGAAAATCAAGCACGCTGCCCGACTGCTCGTGGGGGAGTCGCTTAT
CTTGATCTTTCTCACGAAGCAATACTGGAACATGGCCGAAATAACGAAGA
CCACCAGCACCAAGGCGGATCACAAACTATGATTGCTATTGATAGTGCTA
ATGATACTGCTGTCCCGGAAAATCCGTTTGCCTCTTTTACCTACTGTGGA
GACGAAGGAAGCGCGCTGATGGTAGGCGTCCCTTCCGCCAGGAAGATCGG
CCACTCCAGTGGTATTGGGCAGAGGAAGAAGCTG
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