mRNA_F-serratus_M_contig1118.1097.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1118.1097.1
Unique NamemRNA_F-serratus_M_contig1118.1097.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1118.1097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1118contigF-serratus_M_contig1118:121322..122280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size719
Cds size645
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1118.1097.1prot_F-serratus_M_contig1118.1097.1Fucus serratus malepolypeptideF-serratus_M_contig1118 121395..122280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.3207543-UTR-F-serratus_M_contig1118:121321..1213941622929004.3207543-UTR-F-serratus_M_contig1118:121321..121394Fucus serratus maleUTRF-serratus_M_contig1118 121322..121394 -
1690962665.1625729-UTR-F-serratus_M_contig1118:121321..1213941690962665.1625729-UTR-F-serratus_M_contig1118:121321..121394Fucus serratus maleUTRF-serratus_M_contig1118 121322..121394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.334236-CDS-F-serratus_M_contig1118:121394..1217801622929004.334236-CDS-F-serratus_M_contig1118:121394..121780Fucus serratus maleCDSF-serratus_M_contig1118 121395..121780 -
1690962665.1756241-CDS-F-serratus_M_contig1118:121394..1217801690962665.1756241-CDS-F-serratus_M_contig1118:121394..121780Fucus serratus maleCDSF-serratus_M_contig1118 121395..121780 -
1622929004.3457954-CDS-F-serratus_M_contig1118:122021..1222801622929004.3457954-CDS-F-serratus_M_contig1118:122021..122280Fucus serratus maleCDSF-serratus_M_contig1118 122022..122280 -
1690962665.1842735-CDS-F-serratus_M_contig1118:122021..1222801690962665.1842735-CDS-F-serratus_M_contig1118:122021..122280Fucus serratus maleCDSF-serratus_M_contig1118 122022..122280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1118.1097.1

>prot_F-serratus_M_contig1118.1097.1 ID=prot_F-serratus_M_contig1118.1097.1|Name=mRNA_F-serratus_M_contig1118.1097.1|organism=Fucus serratus male|type=polypeptide|length=215bp
SFQKARLSTSSCCAFLLQEVPTSTRVNVRRWRGVYLTADESWWEGGHRRR
EINRSSREGRRGTHFTVNACTPDERPLCVALELAHGGSKLLVYSPTYGEP
PPPAAAAAATAAAAASAAAALPTTASPPSTTAGAAAAAEAAAIAPIIRAV
CTCWQGGQYQPPPQPPQLSPTTAFTYTKSGRSGCSASGSGAKCRRRLTPG
WSSRERAIEHHCHW*
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mRNA from alignment at F-serratus_M_contig1118:121322..122280-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1118.1097.1 ID=mRNA_F-serratus_M_contig1118.1097.1|Name=mRNA_F-serratus_M_contig1118.1097.1|organism=Fucus serratus male|type=mRNA|length=959bp|location=Sequence derived from alignment at F-serratus_M_contig1118:121322..122280- (Fucus serratus male)
AGCTTTCAAAAAGCGCGGTTGAGTACATCTAGCTGCTGCGCCTTCCTGCT
ACAAGAGGTACCGACTTCGACGAGGGTTAACGTTCGTCGTTGGCGGGGGG
TATACCTTACTGCTGATGAATCGTGGTGGGAAGGCGGGCACCGAAGACGG
GAGATAAATCGGTCAAGCCGAGAAGGACGGAGAGGCACACATTTTACCGT
CAACGCTTGTACTCCTGACGAGCGTCCTCTGTGTGTTGCTTTGGAACTTG
CGCACGGTGGTAAGTTTTAATCAAGCTCGTGGGAAAGTTCCTAAAACGAC
CGCAATACTGAGGGAAGTGGATCCACGTTGCCCTAGCTATAATAGCGCAT
AGCTTGGGGTGATACGCATCGTACGGGCAACACGACAGATAGCGTACAAC
TGACAGGACTGTATTTCAGGAGTCCTAATTTTGTACCTGTACCTCTAGAC
TAATTATACAAGCTACGGTACGCTGCGCTGTTGTGTTGTATAAACCACAG
GTAGTAAACTGCTGGTCTACTCACCAACCTATGGCGAACCGCCTCCGCCA
GCAGCAGCAGCAGCAGCAACGGCAGCAGCAGCAGCATCAGCTGCAGCAGC
ACTCCCAACAACAGCTTCACCACCCTCAACAACCGCAGGCGCCGCCGCAG
CTGCAGAGGCCGCGGCCATTGCCCCCATCATCCGAGCTGTTTGCACCTGT
TGGCAGGGTGGGCAATATCAACCTCCCCCCCAACCTCCACAACTCTCTCC
AACAACAGCATTTACATATACAAAATCGGGTCGCTCAGGGTGTAGCGCAA
GCGGCAGCGGCGCAAAGTGCCGTCGCCGGCTTACTCCAGGTTGGAGTTCA
AGGGAACGGGCCATCGAACATCACTGCCACTGGTAGCGGTGCCGGTGCCG
GTGCGAGTGCCGCGCCGCCGTCGAGCACTCAGCCGTTACCACAGGGAAGA
TTTCCTCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1118:121322..122280-

>mRNA_F-serratus_M_contig1118.1097.1 ID=mRNA_F-serratus_M_contig1118.1097.1|Name=mRNA_F-serratus_M_contig1118.1097.1|organism=Fucus serratus male|type=CDS|length=1290bp|location=Sequence derived from alignment at F-serratus_M_contig1118:121322..122280- (Fucus serratus male)
AGCTTTCAAAAAGCGCGGTTGAGTACATCTAGCTGCTGCGCCTTCCTGCT
ACAAGAGGTACCGACTTCGACGAGGGTTAACGTTCGTCGTTGGCGGGGGG
TATACCTTACTGCTGATGAATCGTGGTGGGAAGGCGGGCACCGAAGACGG
GAGATAAATCGGTCAAGCCGAGAAGGACGGAGAGGCACACATTTTACCGT
CAACGCTTGTACTCCTGACGAGCGTCCTCTGTGTGTTGCTTTGGAACTTG
CGCACGGTGAGCTTTCAAAAAGCGCGGTTGAGTACATCTAGCTGCTGCGC
CTTCCTGCTACAAGAGGTACCGACTTCGACGAGGGTTAACGTTCGTCGTT
GGCGGGGGGTATACCTTACTGCTGATGAATCGTGGTGGGAAGGCGGGCAC
CGAAGACGGGAGATAAATCGGTCAAGCCGAGAAGGACGGAGAGGCACACA
TTTTACCGTCAACGCTTGTACTCCTGACGAGCGTCCTCTGTGTGTTGCTT
TGGAACTTGCGCACGGTGGTAGTAAACTGCTGGTCTACTCACCAACCTAT
GGCGAACCGCCTCCGCCAGCAGCAGCAGCAGCAGCAACGGCAGCAGCAGC
AGCATCAGCTGCAGCAGCACTCCCAACAACAGCTTCACCACCCTCAACAA
CCGCAGGCGCCGCCGCAGCTGCAGAGGCCGCGGCCATTGCCCCCATCATC
CGAGCTGTTTGCACCTGTTGGCAGGGTGGGCAATATCAACCTCCCCCCCA
ACCTCCACAACTCTCTCCAACAACAGCATTTACATATACAAAATCGGGTC
GCTCAGGGTGTAGCGCAAGCGGCAGCGGCGCAAAGTGCCGTCGCCGGCTT
ACTCCAGGTTGGAGTTCAAGGGAACGGGCCATCGAACATCACTGCCACTG
GTAGGTAGTAAACTGCTGGTCTACTCACCAACCTATGGCGAACCGCCTCC
GCCAGCAGCAGCAGCAGCAGCAACGGCAGCAGCAGCAGCATCAGCTGCAG
CAGCACTCCCAACAACAGCTTCACCACCCTCAACAACCGCAGGCGCCGCC
GCAGCTGCAGAGGCCGCGGCCATTGCCCCCATCATCCGAGCTGTTTGCAC
CTGTTGGCAGGGTGGGCAATATCAACCTCCCCCCCAACCTCCACAACTCT
CTCCAACAACAGCATTTACATATACAAAATCGGGTCGCTCAGGGTGTAGC
GCAAGCGGCAGCGGCGCAAAGTGCCGTCGCCGGCTTACTCCAGGTTGGAG
TTCAAGGGAACGGGCCATCGAACATCACTGCCACTGGTAG
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