mRNA_F-serratus_M_contig1118.1096.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1118.1096.1 vs. uniprot
Match: A0A6H5JPR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR6_9PHAE) HSP 1 Score: 311 bits (796), Expect = 3.720e-84 Identity = 171/349 (49.00%), Postives = 219/349 (62.75%), Query Frame = 1
Query: 1720 GGDDHFSITGLAFVHEHWQDGVCILHHPEDGVAGGGVQGAGGALALRRLVKCWGVDVKAGMTKAQLEADLRNAARNGTLLDSG--SFSYDIPEMFPAPSSQPQATVEAATASSV-AVAGRESEASS----------SEQWCVEGQIVWVRGAFVAYMDGQAIEDNDVWCPGLVCVR----MADPESGEGKGDPEAGSLGFVVDVLGQSQAEFEVEGDNLTGFPGNGENLETVRDSAESGLGSPPDHMSLAVAQAILACLKCGWDPQRGTNILRPALCNDQGQGDARVKTYAKAWGIDPIKLEDLLKVSWKLMRPVPRGQENA--------KQDLERDD----WEHLRST 2679
G + FS+ GL+ V E W DGVC+L P A G +RRLV+CWGV+V GMTK+QL + L+ A+R G L +G S++Y++P + +A EAA A+ V A G E ++ EGQ+VWVRGAFVAYMDGQA+ED+DVWCPG+VC + P G A G VVDV+GQS+ EF V DNLTGFPG G+NLE R S +GLG+PPDHM LAVAQAILACLKCGWDP RGTN+LRPALCNDQ +GDAR+ YA AWG+DP +LE+LLK SW LM+P + + A ++++E ++ W+HLR+T
Sbjct: 111 GEGEEFSVPGLSLVEERWHDGVCLLQRPSSSGAEG---------EIRRLVRCWGVEVLPGMTKSQLSSQLKAASREGLLPLNGCLSYTYELPTL------AVEAAAEAAEAAKVKAEVGAEXXXXXXXVGGGGRKFGDECYNEGQVVWVRGAFVAYMDGQAVEDDDVWCPGVVCAADNSAASSPAETNGGYGAVASPGGLVVDVMGQSKVEFAVGTDNLTGFPGYGDNLEAFRHSVATGLGNPPDHMCLAVAQAILACLKCGWDPARGTNLLRPALCNDQREGDARLGKYAAAWGVDPDRLEELLKYSWALMKPNAQKSKRADGDQAGSREEEVEEEEGEGEWDHLRAT 444
BLAST of mRNA_F-serratus_M_contig1118.1096.1 vs. uniprot
Match: D7FJW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW8_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.290e-74 Identity = 132/182 (72.53%), Postives = 150/182 (82.42%), Query Frame = 1
Query: 583 LLYIPELDRRPRMGVRCESMSLKLLTGQARLVEALAGMYMKSINFLADEGRGEFAIPGAPQAFLPFERALYAAGMRDGDVVTLVDGLPATQGTLAKLGAKAHSQCNQPCVACVRLTFLRPVGASPTMPLASPQSVIDRWRELVRIIVLDSVPESPRKQEVLDQLERLQDASTLRTLACHSFE 1128
+L+IP R+ R+GV CE+MSL+LLT Q+RLVEALAGMYMKS F ADEG GE ++PGAPQAFLP ERALYAAGMRDGDVVTLVDGLPATQ TL LG KAHS CN+PCVA VRLTFLRP G S +P SPQSV+D WRE VR+IVL+SVPES RK EV+ +L RLQDA+TLR LAC +FE
Sbjct: 1 MLFIPASGRQGRVGVTCETMSLQLLTAQSRLVEALAGMYMKSTMFRADEGLGELSLPGAPQAFLPVERALYAAGMRDGDVVTLVDGLPATQETLGALGDKAHSNCNEPCVASVRLTFLRPCGTS--VPPRSPQSVLDLWREHVRVIVLNSVPESNRKHEVMLELSRLQDATTLRALACQAFE 180
BLAST of mRNA_F-serratus_M_contig1118.1096.1 vs. uniprot
Match: A0A6H5JPZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ0_9PHAE) HSP 1 Score: 265 bits (678), Expect = 3.480e-74 Identity = 139/205 (67.80%), Postives = 158/205 (77.07%), Query Frame = 1
Query: 478 RGHQPTGAALLRLLAAGQPHWYIGQEALPTGDCKTLLYIPELDRRPRMGVRCESMSLKLLTGQARLVEALAGMYMKSINFLADEGRGEFAIPGAPQAFLPFERALYAAGMRDGDVVTLVDGLPATQGTLAKLGAKAHSQC-----------------NQPCVACVRLTFLRPVGASPTMPLASPQSVIDRWRELVRIIVLDSVPE 1041
R +P+G ALLRLLA GQPHWY+GQEALPTG+ KT+L+IP R+ R+GV CE+MSL+LLT Q+RLVEALAGMYMKS F ADEG GE ++PGAPQAFLP ERALYAAGMRDGDVVTLVDGLPATQ TL LG KAHS+C N+PCVA VRLTFLRP G S +P SPQSV+D WRE VR+IVL+SVPE
Sbjct: 264 RAEEPSGVALLRLLANGQPHWYVGQEALPTGERKTMLFIPASGRQGRVGVTCETMSLQLLTAQSRLVEALAGMYMKSTMFRADEGLGELSLPGAPQAFLPVERALYAAGMRDGDVVTLVDGLPATQDTLGALGDKAHSKCRKLFTAWSPPPPFPSPQNEPCVASVRLTFLRPCGTS--VPPRSPQSVLDLWREHVRVIVLNSVPE 466
BLAST of mRNA_F-serratus_M_contig1118.1096.1 vs. uniprot
Match: D7FJW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW9_ECTSI) HSP 1 Score: 246 bits (629), Expect = 5.510e-67 Identity = 140/300 (46.67%), Postives = 175/300 (58.33%), Query Frame = 1
Query: 1900 MTKAQLEADLRNAARNGTLLDSG--SFSYDIPEMFPAPSSQPQATVEAATASS--------------------VAVAGRESEASSSEQWCVEGQIVWVRGAFVAYMDGQAIEDNDVWCPGLVCVRM----ADPESGEGKGDPEAGSLGFVVDVLGQSQAEFEVEGDNLTGFPGNGENLETVRDSAESGLGSPPDHMSLAVAQAILACLKCGWDPQRGTNILRPALCNDQGQGDARVKTYAKAWGIDPIKLEDLLKVSWKLMRPVPRGQENAKQD--------------LERDDWEHLRST 2679
MTK+QL + L+ A+R G L +G S++Y++P + VEAA V G + + EGQ+VWVRGAFVAYMDGQA+ED+DVWCPG+VC + P G A G VVDV+GQS+ EF V DNLTGFPG G+NLE R S +GLG+PPDHM LAVAQAILACLKCGWDP RGTN+ RPALCN+Q +GDAR+ YA AWG+DP +LE+LLK SW LM+P + + A D +W+HLR+T
Sbjct: 1 MTKSQLSSQLKAASREGLLPLNGCLSYTYELPTL----------AVEAAXXXXXXXXXXXXXXXXXXXXXXXXVGGGGHK----FGDACYNEGQVVWVRGAFVAYMDGQAVEDDDVWCPGVVCAAANSAASSPAEANGGDGAVASPGGLVVDVMGQSKVEFAVGTDNLTGFPGYGDNLEAFRHSVATGLGNPPDHMCLAVAQAILACLKCGWDPARGTNLFRPALCNEQREGDARLGKYATAWGVDPDRLEELLKYSWALMKPNAQKSKKADGDQAGSREEXXXXXXXXXXXEWDHLRAT 286 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1118.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1118.1096.1 >prot_F-serratus_M_contig1118.1096.1 ID=prot_F-serratus_M_contig1118.1096.1|Name=mRNA_F-serratus_M_contig1118.1096.1|organism=Fucus serratus male|type=polypeptide|length=1275bp MRAAGGLGRGGGSEFVGGPAANPSTGVSMATAGRGRVNGSVGSNGPYVAVback to top mRNA from alignment at F-serratus_M_contig1118:106201..121168- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1118.1096.1 ID=mRNA_F-serratus_M_contig1118.1096.1|Name=mRNA_F-serratus_M_contig1118.1096.1|organism=Fucus serratus male|type=mRNA|length=14968bp|location=Sequence derived from alignment at F-serratus_M_contig1118:106201..121168- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1118:106201..121168- >mRNA_F-serratus_M_contig1118.1096.1 ID=mRNA_F-serratus_M_contig1118.1096.1|Name=mRNA_F-serratus_M_contig1118.1096.1|organism=Fucus serratus male|type=CDS|length=7650bp|location=Sequence derived from alignment at F-serratus_M_contig1118:106201..121168- (Fucus serratus male)back to top |