mRNA_F-serratus_M_contig1118.1094.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1118.1094.1 vs. uniprot
Match: D7FJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW1_ECTSI) HSP 1 Score: 338 bits (867), Expect = 2.270e-101 Identity = 271/546 (49.63%), Postives = 309/546 (56.59%), Query Frame = 2
Query: 239 QAHRFAQRAEEATRLADFALAADLHLKSAKAFLMATELVRDHGVLASALLLLADSHAARAEEATVRQRISKNGQLS-----SSSRSGVASVTDR----GVLLAG-GDRARQ----------APAVATDMEDSIMRGPAAYNEGGSXXXXXXNASTVAAEELVKKFRPQRDDLLELERQLAKLGLESKAGGVGGRARHRTGAIPGAHLSSALGESFCLLNQSVIIGGGVGIGGGGLN--DRGYGGSASVLPRKQDHPRQVQSTTHATVPGAAEGEFSTADGGVGGGGGEKIRYRTTENDEVVQQAAGMQGGSSAD-------PDSSVANVG---------GRGSREDTR-GGPDGVFDRDARRGSGESAAGAAGAHEARRFSTSGEGR---------NDLRREDEEETHQGEIMRLLTCLKTLGDENVSLMKECEDRDRVRQESEATREEMRRFQTKYQERFTLLKKTLDEVVRSYPLLAGAGAAVGPNASAGGIEGARATEEVQRLTQANRKLTAQVKKYERYYLELCQKAEIKRKEQLAQPKTAR 1732
+AHR AQ AE+A R D A A +LHL +A+ FL A E V++HGVLAS+LLLLADSHAARAE+ +R R+S G+ S SSSR + R GV G GD R+ + +V DM+DSIMRG A AA EL +KFRPQRDDLLELERQLAKLGLESK GG GGRAR R + HLSSALG+SF LN+SVI GGG G G N G G +A VL PG G + GG GG R E+D + A + G +D D VA G GRG+ R GP DR + + AG A E+ GEGR + RR EEE QGEIMRLLTCLKTLGDENVSLMKECEDRD+VRQESEA REEM+RFQ KY ERFTLLKKTLDEV+RSYP LA G A A + A+ TEEVQRLTQ NRKLT QVKKYE YY ELC KAE KRKEQL+Q K AR
Sbjct: 14 KAHRCAQGAEDACRKGDHAEATELHLAAARDFLRAAEQVQEHGVLASSLLLLADSHAARAEKGAIRLRLSGEGRGSLNNSLSSSRDLTPAEAYRAAAAGVKATGKGDGRRENVVXXXXXXXSHSVGPDMDDSIMRGTVANGNA----VEAKGGGCDAAAELAQKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGGGAGGNGPANAYGNGNGPAAGVLGS----------------PGTRLGVTNPPGGGGGGWRSTSAPRRFNESDTSPEGAPQIPSGRGSDNVGDGTRADGRVAGGGETPRVGNTVGRGADTARRVQGPGSGADRPS------AGAGGVWAGESAGEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDKVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTA-SATGGASTSDPAKTTEEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAAR 532
BLAST of mRNA_F-serratus_M_contig1118.1094.1 vs. uniprot
Match: A0A6H5KVB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB2_9PHAE) HSP 1 Score: 271 bits (694), Expect = 5.100e-77 Identity = 219/426 (51.41%), Postives = 241/426 (56.57%), Query Frame = 2
Query: 563 MEDSIMRGPAAYNEGGSXXXXXXNASTVAAEELVKKFRPQRDDLLELERQLAKLGLESKAGGVGGRARHRTGAIPGAHLSSALGESFCLLNQSVIIGGGVGIGGGGLNDRGYGGSASVLPRKQDHPRQVQSTTHATVPGAAEGEFSTADGGVGGGGGEKIRYRTTENDEVVQQAAGMQGGSSADPDSSVANVGGRGSREDTRGGPDGVFDR----------DARRGSG--------ESAAGAAGAHEARRFSTSGEGRNDL---------RREDEEETHQGEIMRLLTCLKTLGDENVSLMKECEDRDR------VRQESEATREEMRRFQTKYQERFTLLKKTLDEVVRSYPLLAGAGAAVGPNASAGGI---EGARATEEVQRLTQANRKLTAQVKKYERYYLELCQKAEIKRKEQLAQPKTAR 1732
M+DSIMRG AA AA EL KKFRPQRDDLLELERQLAKLGLESK GG GGRAR R + HLSSALG+SF LN+SVI GG G GG GL GG A+ V + PG G + GG GG R E D + A + G +D NVG G+R D R G R ARR G + AG A A E+ R GEGR L RR EEE QGEIMRLLTCLKTLGDENVSLMKECE+RD+ VRQESEA REEM+RFQ KY ERFTLLKKTLDEV+RSYP LA G A ++AGG + A+ EEVQRLTQ NRKLT QVKKYE YY ELC KAE KRKEQL+Q K AR
Sbjct: 1 MDDSIMRGTAANGNA----VEANGGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGG-AGAGGNGLVA--VGGPANAYGNGNGPAAGVLGS-----PGTRPGVTNPPGGG--GGRSTSAPRRFNEGDASPEGAPQIPSGRGSD------NVG-DGTRADGRVAGGGEIPRVGNTVGRGADTARRVQGPGCGADRPSAGAGGAWAGESAREGGGGEGRPSLLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEERDKASASTAVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTA----SAAGGTSTSDPAKTVEEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAAR 401
BLAST of mRNA_F-serratus_M_contig1118.1094.1 vs. uniprot
Match: W7TZI2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZI2_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.040e-7 Identity = 48/130 (36.92%), Postives = 67/130 (51.54%), Query Frame = 2
Query: 1307 EETHQGEIMRLLTCLKTLGDENVSLMKECEDRDRVRQESEATREEMRRFQTKYQERFTLLKKTLDEVVRSYPLLAGAGAAVGPNASAGGIEGARA-----TEEVQRLTQANRKLTAQVKKYERYYLELCQ 1681
E QGE++RLL C+KTLGDEN L+K ED +R RQE+E R E FQ Y +RF L+ L+E YP + V ++ A T + R +A RK A + +Y+ +Y +L Q
Sbjct: 353 EAVQQGEVVRLLACMKTLGDENALLIKRAEDGERARQENERIRRETLEFQELYAKRFKGLRAALEEFREKYPHESNPANHVASLRETARVKSLEAEVESLTVRLNREKEAGRKKDAMLARYQAWYTKLRQ 482
BLAST of mRNA_F-serratus_M_contig1118.1094.1 vs. uniprot
Match: A0A5D6XN33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN33_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.580e-7 Identity = 145/536 (27.05%), Postives = 225/536 (41.98%), Query Frame = 2
Query: 212 EVDDSPPVVQAHRFAQRAEEATRLADFALAADLHLKSAKAFLMATELVRDHGVLASALLLLADSHAARAEEATVRQRISKNGQLSSSSRSGVASVTDRGVLLAGGDRARQAP-AVATDMEDSIM---RGPAAYN--EGGSXXXXXXNASTVAAEELVKKFRPQRDDLLELERQLAKLGLESKAGGVGGRARHRTGAIPGAHLSSALGESFCLLNQSVIIGGGVGIGGGGLNDRGYGGSASVLPRKQDHPRQVQSTTHATVPGAAEGEFSTADGGVGGGGGEKIRYRTTENDEVVQQAAGMQGGSSADPDSSVANVGGRGSREDTRGGPDGV------FDRDARRGSGESAAGAAGAHEARRFSTSGEGRNDLRREDEEETHQG-EIMRLLTCLKTLGDENVSLMKECEDRDRVRQESEATREEMRRFQTKYQERFTLLKKTLDEVVR--------SYPL--------------LAGAGAAVGPNASAGGIEGARATEEVQ--RLTQANRKLTAQVKKYERYYLELCQKAEIKRKEQ 1708
E + + P VQAH A RAEEA R D A +++ F+ A V ALLLLA+++ RA+ A R+ G L+SS++ + R V G++ P A ++ S R A N GG+ + + VAA E + ++ EL R+L +LGL G G ++ + HLSS+LG+SFCLL VG+ G ++ A+V R ++ ++ + G+ + D E+ ++ + V AG GG S S +GG+ S R G + F D R GA A ++ E HQ EI+RLL +KTL EN L+K+C+ V+ E+ E M +F+T Y ++ ++K+ L+E R S PL L+ AG+A PNA +E +E Q +L +A + Q+ KYE++Y L A+ K++ Q
Sbjct: 18 EYEAAAPAVQAHFHALRAEEALRRGDCVYAEREARLASERFVRAAAAVGTSKRTVDALLLLAENYEFRAKLA----RVEIGGSLTSSAKD-----SGRPVANGSGEKGEATPLGAAPELSTSTAATARATAVENVASGGAGH----DPAVVAAAE--SQLNVAAAEMEELWRRLQELGLS----GAGSSDKNNV-LVSSRHLSSSLGDSFCLLPAKTKSS--VGVHGTAIDGEST-LRAAVAARMRNQRLRLMEQQY--------GQRAILD--------ERF-HKQQQQRFSVGGGAGPTGGLSPH---SGNGIGGQHSYGPDRAGRNAHSEDPHHFSHDRRSSXXXXXXXXTGAQPAGA---------EVEALQETIAHQKYEIVRLLNTVKTLSAENTKLLKKCDTLTSVQSENRELSESMEKFKTHYNQKLVMIKRALEEWRRQRNSAAAASPPLAAXPGPSTPXGPSNLSSAGSAPDPNAHTAALEAKLKLQEQQLAQLAEAVKTKDDQLSKYEKWYKTLKAGAKAKQRSQ 501
BLAST of mRNA_F-serratus_M_contig1118.1094.1 vs. uniprot
Match: A0A7S4VNI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VNI7_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 5.520e-5 Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query: 1313 THQGEIMRLLTCLKTLGDENVSLMKECEDRDRVRQESEATREEMRRFQTKYQERFTLLKKTLDEVVRSYP 1522
T+ ++MRLL LKTLGDEN SL++E E R+E++A REEM++F+ Y +RF +K L++ YP
Sbjct: 650 TNTKQLMRLLDSLKTLGDENASLLQEVEAAQAARKEAKAAREEMKQFKADYGKRFAKMKAALEKFRIQYP 719 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1118.1094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1118.1094.1 >prot_F-serratus_M_contig1118.1094.1 ID=prot_F-serratus_M_contig1118.1094.1|Name=mRNA_F-serratus_M_contig1118.1094.1|organism=Fucus serratus male|type=polypeptide|length=661bp MKEELPFANMSPRMDDERILIEEPDVNVMIRGTAGEVDDSPPVVQAHRFAback to top mRNA from alignment at F-serratus_M_contig1118:50676..67815- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1118.1094.1 ID=mRNA_F-serratus_M_contig1118.1094.1|Name=mRNA_F-serratus_M_contig1118.1094.1|organism=Fucus serratus male|type=mRNA|length=17140bp|location=Sequence derived from alignment at F-serratus_M_contig1118:50676..67815- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1118:50676..67815- >mRNA_F-serratus_M_contig1118.1094.1 ID=mRNA_F-serratus_M_contig1118.1094.1|Name=mRNA_F-serratus_M_contig1118.1094.1|organism=Fucus serratus male|type=CDS|length=3966bp|location=Sequence derived from alignment at F-serratus_M_contig1118:50676..67815- (Fucus serratus male)back to top |