mRNA_F-serratus_M_contig1118.1092.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: A0A6H5KSW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW4_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 4.490e-115 Identity = 421/841 (50.06%), Postives = 485/841 (57.67%), Query Frame = 1
Query: 1633 DLEHWEPEKALNRSIFVDDEIDEHDITVILLIPNEKRVVGIVVGKRGLRLKTILATSKCAITVENDNYCDKESGVRKVILRGSIRSVVLAQQLIMDLVWEEMETAIGVMQFMVPDEASSRIIGRQGSFIKQLQRESACKINTLKDVELRSGLKARVLSVCGSNTAMSKGLYLVSRKIASRWEYAPEWEGGDPTAERGGGLPKKSAAASGVSAPGSSDHGHYDNMDVDSPAGQRRQRGGGQRSRGRGERGDELDSYGSRYDRDRDGGRDXXXXXXGGGRGMERDSGRGGDRXXXXXXXXXRESRFSRPGREQTPDSGPMSGSRSQGQIHPAALN----PWVDPALLATVVGSAAGAPPVGSA------------------EAWQRLLGQIPTSARETLGIAAQ-LGAQAPSATDVYAQVVAQQQQ------QPLQQAPQ-VSWQPSILQQVTPAPVGTGPV-------FLAPGAISQSQPQPQYQQQPGN-----QQDPSTPQIMYQPIQSAMQTSQPQXXXXXXXXXXXXXXXXXXXXQGVYNPSPAITGPPHQGPTHGHGQPPAAFAPXXXXXXXXXXXXLPGMYSSGQAPGQVVAMGSPTSQQVMLQXXXXXXXXXXXXXXXGQSGQPTSQSQAQNQMXXXXXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXXXXXFLQQGQQVDFSRAPSQQQXXXPAQDQRGAPAPASATHGGNP---------APAVNYPSMEVRIPEASVGYVFGKGGSTIGEVKSKAGVTIVTENNMDKSNSRLLHVSGEMGSIQKAITLLNDLVVKWQSLPPKRGH 4002
DLE+W+PE AL RS+F+ D++D+H ITV+LLIPNEKRVVGIVVG+ GLRLKTIL+TSKC ITVEND +CDKESGVRKV+LRGSIR+VV+AQQLIMDLVWEEMETAIGVMQFM+PDEASSR+IGRQG+FIKQLQRES CKINTL D ELRSGLKARV++VCG+N++MSKGLYL++RKIASRWEYAPEWEGGDPT G GLP AA + P SS +MD DS D++D Y DRDGGR+ GR XXXXXXXXX + R+ G GS + L PW+ T SAA APP EAWQRLLGQIP +ARE+LG A + A A +A D++ Q+ + Q L QAPQ VSWQP FL P +++ SQPQ Q Q Q S Q++YQP SA+Q++QPQ XXXXXX P Q P QPP + +G + GQVV+M XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX XXX + PSMEVRIPEASVGYVFGKGG+TI +VKSKAGV I T++ +D +NSRLLHV+G+M +IQ AITLLNDLVVKWQSLPPKR +
Sbjct: 139 DLENWDPENALIRSMFLTDDLDKHAITVVLLIPNEKRVVGIVVGRHGLRLKTILSTSKCTITVENDKFCDKESGVRKVVLRGSIRNVVMAQQLIMDLVWEEMETAIGVMQFMIPDEASSRVIGRQGTFIKQLQRESGCKINTLNDTELRSGLKARVMNVCGTNSSMSKGLYLIARKIASRWEYAPEWEGGDPTLPSGQGLPSAPTAAHSLPPPDSS------SMDADSGRDSGXXXXXXXXXXXXXXXXDDIDRY------DRDGGRN--------GRXXXXXXXXXXXXXXXXXXXXXXXXXYXXXXRDSHDSGGGRDGSSKSSRSAAPPLQTTSAPWI------TDQPSAA-APPAXXXXXXXXXXXXXXXXXXXXXEAWQRLLGQIPATARESLGFGAMPVPATAAAAADMFGQLSGRAAMASAAPPQQLHQAPQQVSWQPPXXXXXXXXXXXXXXXXXXXXXXFLPPTSLAPSQPQQYVQMQAATAAASQDQTQSGSQVLYQPTVSALQSAQPQQQQALYTTTSQQPQXXXXXXXXXM----PTHSPQQQAPVGVPQQPPHGYQSTQQPQQLQQTTVFSTTPPTGLSTGQVVSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAGSSDPSMEVRIPEASVGYVFGKGGNTIADVKSKAGVNISTDSTVDGTNSRLLHVTGKMSAIQHAITLLNDLVVKWQSLPPKRNN 948
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: D7FJW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW6_ECTSI) HSP 1 Score: 345 bits (884), Expect = 2.370e-98 Identity = 178/239 (74.48%), Postives = 206/239 (86.19%), Query Frame = 1
Query: 1633 DLEHWEPEKALNRSIFVDDEIDEHDITVILLIPNEKRVVGIVVGKRGLRLKTILATSKCAITVENDNYCDKESGVRKVILRGSIRSVVLAQQLIMDLVWEEMETAIGVMQFMVPDEASSRIIGRQGSFIKQLQRESACKINTLKDVELRSGLKARVLSVCGSNTAMSKGLYLVSRKIASRWEYAPEWEGGDPTAERGGGLPKKSAAASGVSAPGSSDHGHYDNMDVDS--PAGQRRQRG 2343
DLE+W+PEKAL RS+F+ D++D+H ITV+LLIPNEKRVVGIVVG+ GLRLKTIL+TSKC ITVEND +CDKESGVRKV+LRGSIR+VV+AQQLIMDLVWEEMETAIGVMQFM+PDEASSR+IGRQG+FIKQLQRES CKINTL D ELRSGLKARV++VCG+N++MSKGLYL++RKIASRWEYAPEWEGGDPT G GLP AA + P SS ++D DS +G RRQRG
Sbjct: 378 DLENWDPEKALIRSMFLTDDLDKHAITVVLLIPNEKRVVGIVVGRHGLRLKTILSTSKCTITVENDKFCDKESGVRKVVLRGSIRNVVMAQQLIMDLVWEEMETAIGVMQFMIPDEASSRVIGRQGTFIKQLQRESGCKINTLNDTELRSGLKARVMNVCGTNSSMSKGLYLIARKIASRWEYAPEWEGGDPTLPSGQGLPSAPTAAHSLPPPDSS------SVDADSGRDSGGRRQRG 610
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: A0A6H5KUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG6_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.980e-7 Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 1165 SSQQGLIMTGNKDEDVKLTADFFLAAKGNSYKAARVLIETVLATIDRRERLEKETLKRSHA 1347
++ + L++T ++ DV+ ADF LA KGNSYK ARV +E+VLATIDR+ERLE+E+LKR A
Sbjct: 376 AASKSLVLTA-ENLDVQRAADFMLAVKGNSYKGARVFVESVLATIDRKERLEQESLKRRQA 435
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: A0A7S2UVE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVE9_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.500e-7 Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 3766 SMEVRIPEASVGYVFGKGGSTIGEVKSKAGVTIVTENNMDKSNSRLLHVSGEMGSIQKAITLLNDLVVKWQS 3981
+ E+ IPE ++G+V G+GGS I +V+ ++G I T D + RLL VSG+ S+ A+ +LN+LV W S
Sbjct: 32 TTEIEIPEGAMGFVMGRGGSMIRDVRKRSGAQIETSQKTDGGH-RLLVVSGDFESVHSAVQILNELVTTWAS 102
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: F2UGV0_SALR5 (Uncharacterized protein n=2 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UGV0_SALR5) HSP 1 Score: 63.2 bits (152), Expect = 2.710e-6 Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 1
Query: 1747 VGIVVGKRGLRLKTILATSKCAITVENDNYCDKESGVRKVILRGSIRSVVLAQQLIMDLVWEE--------METAIGVMQFMVPDEASSRIIGRQGSFIKQLQRESACKINTLKDVELRSGLKARVLSVCGSNTAMSKGLYLVSRKIA 2166
VG ++G+ G ++ + A S C + V + C+ + VRK+ LRGS SV +Q++ + E+ ET + +PD+ R+IGRQGS I+Q+Q S ++ K E R G R ++V G+ + K L+ +K++
Sbjct: 160 VGRLIGREGSNIRQMEALSGCQVNVPAE--CEPGTSVRKITLRGSPESVRYCKQMLEQKIREDGGDPSAPATETITKIAY--IPDDHVGRVIGRQGSTIRQIQELSGAHMDIAK--ECRPGEYQREVTVTGTPAQVEKCEELIRKKVS 301
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: UPI000771BD6A (tudor and KH domain-containing protein homolog n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771BD6A) HSP 1 Score: 62.4 bits (150), Expect = 5.160e-6 Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 1702 HDITVILLIPNEKRVVGIVVGKRGLRLKTILATSKCAITVENDNYCDKESGVRKVILRGSIRSVVLAQQLIMDLVWEEMETAIGVMQFMVPDEASSRIIGRQGSFIKQLQRESACKINTLKDVELRSGLKARVLSVCGSNTAMSKGLYLVSRKIASRWEYAPEWE 2196
H L +P++ VV V+G++G +K I A ++ +I D ES R I+RG S+ LA+ +I ++ + + I + +P A SR+IGR G I+Q+Q S+ KI K + K RV+ + GS+ ++ L L+ K+ E E E
Sbjct: 48 HQSVSFLKVPSQ--VVPAVIGRQGQIIKNIEANTESSIKFAPP---DIESKDRVCIIRGKPESIQLAEHMINTII--QSQPIIETYETFIPQRACSRVIGRGGETIQQIQTYSSAKIILEKTLSNNPDAKRRVI-IKGSSEQIATALSLIEEKVREDNEAREELE 204
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Match: A0A7S2XV36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV36_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.330e-5 Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 3733 GGNPAPAVNYP--SMEVRIPEASVGYVFGKGGSTIGEVKSKAGVTIVTENNMDKSNSRLLHVSGEMGSIQKAITLLNDLVVKW 3975
GG P++N + E+ IPE SVG+VFG+GG+ I +V+ ++G I ++ + R+L V+G M S+Q A +LNDLV W
Sbjct: 385 GGGDPPSLNLTKTTTEIEIPEESVGFVFGRGGNQIRDVRQRSGAGIRSDTKT-ATGHRVLVVNGSMQSVQMAAGMLNDLVTAW 466 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1118.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1118.1092.1 >prot_F-serratus_M_contig1118.1092.1 ID=prot_F-serratus_M_contig1118.1092.1|Name=mRNA_F-serratus_M_contig1118.1092.1|organism=Fucus serratus male|type=polypeptide|length=1358bp MSPARGGKGAVGRRAAASEAGGAAARGRKKRISRAGRAKMAAAKAAAAAGback to top mRNA from alignment at F-serratus_M_contig1118:32334..45416- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1118.1092.1 ID=mRNA_F-serratus_M_contig1118.1092.1|Name=mRNA_F-serratus_M_contig1118.1092.1|organism=Fucus serratus male|type=mRNA|length=13083bp|location=Sequence derived from alignment at F-serratus_M_contig1118:32334..45416- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1118:32334..45416- >mRNA_F-serratus_M_contig1118.1092.1 ID=mRNA_F-serratus_M_contig1118.1092.1|Name=mRNA_F-serratus_M_contig1118.1092.1|organism=Fucus serratus male|type=CDS|length=8148bp|location=Sequence derived from alignment at F-serratus_M_contig1118:32334..45416- (Fucus serratus male)back to top |