mRNA_F-serratus_M_contig1117.1090.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1117.1090.1
Unique NamemRNA_F-serratus_M_contig1117.1090.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1117.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1117contigF-serratus_M_contig1117:253869..254532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1117.1090.1prot_F-serratus_M_contig1117.1090.1Fucus serratus malepolypeptideF-serratus_M_contig1117 253978..254519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.6121566-UTR-F-serratus_M_contig1117:253868..2539771622929002.6121566-UTR-F-serratus_M_contig1117:253868..253977Fucus serratus maleUTRF-serratus_M_contig1117 253869..253977 +
1690962664.3222804-UTR-F-serratus_M_contig1117:253868..2539771690962664.3222804-UTR-F-serratus_M_contig1117:253868..253977Fucus serratus maleUTRF-serratus_M_contig1117 253869..253977 +
1622929002.660879-UTR-F-serratus_M_contig1117:254519..2545321622929002.660879-UTR-F-serratus_M_contig1117:254519..254532Fucus serratus maleUTRF-serratus_M_contig1117 254520..254532 +
1690962664.3524985-UTR-F-serratus_M_contig1117:254519..2545321690962664.3524985-UTR-F-serratus_M_contig1117:254519..254532Fucus serratus maleUTRF-serratus_M_contig1117 254520..254532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.62528-CDS-F-serratus_M_contig1117:253977..2541591622929002.62528-CDS-F-serratus_M_contig1117:253977..254159Fucus serratus maleCDSF-serratus_M_contig1117 253978..254159 +
1690962664.333032-CDS-F-serratus_M_contig1117:253977..2541591690962664.333032-CDS-F-serratus_M_contig1117:253977..254159Fucus serratus maleCDSF-serratus_M_contig1117 253978..254159 +
1622929002.641717-CDS-F-serratus_M_contig1117:254434..2545191622929002.641717-CDS-F-serratus_M_contig1117:254434..254519Fucus serratus maleCDSF-serratus_M_contig1117 254435..254519 +
1690962664.3420618-CDS-F-serratus_M_contig1117:254434..2545191690962664.3420618-CDS-F-serratus_M_contig1117:254434..254519Fucus serratus maleCDSF-serratus_M_contig1117 254435..254519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1117.1090.1

>prot_F-serratus_M_contig1117.1090.1 ID=prot_F-serratus_M_contig1117.1090.1|Name=mRNA_F-serratus_M_contig1117.1090.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MWDVQQHPQLPCRLLRRRRGKARLLLQYLSCDLGKGKIRGYDGVRNFGKL
GVAKPTCYESRNYEERKRSPNHTAPFEIKQALSLPSQL*
back to top

mRNA from alignment at F-serratus_M_contig1117:253869..254532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1117.1090.1 ID=mRNA_F-serratus_M_contig1117.1090.1|Name=mRNA_F-serratus_M_contig1117.1090.1|organism=Fucus serratus male|type=mRNA|length=664bp|location=Sequence derived from alignment at F-serratus_M_contig1117:253869..254532+ (Fucus serratus male)
TCATGGCATTTCTACAACAGTACGGTACAGTAGATTCGTGGGTAAAGTAA
TCCCAGTCTAGGTTTTCCCTCAGTCGTGGTCGTGTTTGGAATATGGTAAC
GCAATCCCGATGTGGGATGTTCAACAGCACCCGCAACTTCCTTGCCGTCT
TCTACGGAGGCGTCGGGGAAAAGCTCGTCTGCTACTACAGTACCTTAGCT
GCGACCTAGGAAAGGGGAAAATACGAGGCTACGATGGCGTGAGGAATTTC
GGGAAACTTGGGGTTGCAAAACCAACATGCTACGAGAGTAGGTGAGATTC
CGGGAACCACAGCTGGCCAAGTACAACGGCATGTATCTGATTCTTCGCCC
GCTACGGCCATGACCCCTCGGTCGGCATAGCGCCCGGAAGGTAGGCAGGC
GGGTTCTGATTTAAAAAAAATACAAGCACATAACATATGGTGTGGTATCC
ATTCAGTCATCTAGTCAAGGCGACCCGACTAGAACAGCAGTAGCTGTAGT
GATATATCGACACTGCCACATATAAAGTCATTGCACGGCCGCAACCGTCT
TGGGCCTCGGATGCAGGAACTATGAAGAAAGGAAACGTTCACCGAACCAT
ACCGCCCCGTTCGAGATCAAGCAAGCACTCTCTCTACCGTCGCAACTATG
ACTCACCATCGGGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1117:253869..254532+

>mRNA_F-serratus_M_contig1117.1090.1 ID=mRNA_F-serratus_M_contig1117.1090.1|Name=mRNA_F-serratus_M_contig1117.1090.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1117:253869..254532+ (Fucus serratus male)
ATGTGGGATGTTCAACAGCACCCGCAACTTCCTTGCCGTCTTCTACGGAG
GCGTCGGGGAAAAGCTCGTCTGCTACTACAGTACCTTAGCTGCGACCTAG
GAAAGGGGAAAATACGAGGCTACGATGGCGTGAGGAATTTCGGGAAACTT
GGGGTTGCAAAACCAACATGCTACGAGAGTAGATGTGGGATGTTCAACAG
CACCCGCAACTTCCTTGCCGTCTTCTACGGAGGCGTCGGGGAAAAGCTCG
TCTGCTACTACAGTACCTTAGCTGCGACCTAGGAAAGGGGAAAATACGAG
GCTACGATGGCGTGAGGAATTTCGGGAAACTTGGGGTTGCAAAACCAACA
TGCTACGAGAGTAGGAACTATGAAGAAAGGAAACGTTCACCGAACCATAC
CGCCCCGTTCGAGATCAAGCAAGCACTCTCTCTACCGTCGCAACTATGAG
AACTATGAAGAAAGGAAACGTTCACCGAACCATACCGCCCCGTTCGAGAT
CAAGCAAGCACTCTCTCTACCGTCGCAACTATGA
back to top