mRNA_F-serratus_M_contig1117.1081.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1117.1081.1
Unique NamemRNA_F-serratus_M_contig1117.1081.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1117.1081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1117contigF-serratus_M_contig1117:135920..136526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.5457704-CDS-F-serratus_M_contig1117:135919..1360411622929002.5457704-CDS-F-serratus_M_contig1117:135919..136041Fucus serratus maleCDSF-serratus_M_contig1117 135920..136041 -
1690962664.29735-CDS-F-serratus_M_contig1117:135919..1360411690962664.29735-CDS-F-serratus_M_contig1117:135919..136041Fucus serratus maleCDSF-serratus_M_contig1117 135920..136041 -
1622929002.562433-CDS-F-serratus_M_contig1117:136486..1365261622929002.562433-CDS-F-serratus_M_contig1117:136486..136526Fucus serratus maleCDSF-serratus_M_contig1117 136487..136526 -
1690962664.308903-CDS-F-serratus_M_contig1117:136486..1365261690962664.308903-CDS-F-serratus_M_contig1117:136486..136526Fucus serratus maleCDSF-serratus_M_contig1117 136487..136526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1117.1081.1prot_F-serratus_M_contig1117.1081.1Fucus serratus malepolypeptideF-serratus_M_contig1117 135920..136526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1117.1081.1

>prot_F-serratus_M_contig1117.1081.1 ID=prot_F-serratus_M_contig1117.1081.1|Name=mRNA_F-serratus_M_contig1117.1081.1|organism=Fucus serratus male|type=polypeptide|length=54bp
RVAARTLRTRQLLGNRERRQAAVLREAQQNAMYKDGYLRAFDPARPLHLE
SWVQ
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mRNA from alignment at F-serratus_M_contig1117:135920..136526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1117.1081.1 ID=mRNA_F-serratus_M_contig1117.1081.1|Name=mRNA_F-serratus_M_contig1117.1081.1|organism=Fucus serratus male|type=mRNA|length=607bp|location=Sequence derived from alignment at F-serratus_M_contig1117:135920..136526- (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGGTAAAAAAAA
TACCGTTGCAAACATGTTGCACTTCGTTACCAACATGCATTGCCCAGCCC
TACGCACTACAGACCACGACATTGTGCCAAAAGGATTATCGAGGATTTGC
AGCAGTAGCACAACAGAGCACGCAATTGTCTTTACATATACGATCGACAA
TGTACAGGATTAGGGTCCATGCTAGAAACTGCTGTGTGCTCGAAACTGTT
CAGAAGGAGAGCGCGCAGGTCTACCATCTACACGAATGTACACCAGTAGT
TATTCTACACATGCTATGAAGATTGTACACCACTAGGGTCTGTGCTAAAC
ACACTGTGCTCGAAATTGTTCATGATAAGAGCGTGAAGGTCTATCGCCTG
CAGGTGTACAAACTCGTTGTCAAACAATCGGCACAAATACACTCATCGAT
ACTATCCTGTTTTTCAAAACTATTCTGTTTCACAGGAAATCGTGAACGCC
GACAGGCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGAC
GGTTATCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTG
GGTGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1117:135920..136526-

>mRNA_F-serratus_M_contig1117.1081.1 ID=mRNA_F-serratus_M_contig1117.1081.1|Name=mRNA_F-serratus_M_contig1117.1081.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig1117:135920..136526- (Fucus serratus male)
CGGGTGGCTGCTCGGACACTACGGACTCGCCAGCTCCTAGCGGGTGGCTG
CTCGGACACTACGGACTCGCCAGCTCCTAGGAAATCGTGAACGCCGACAG
GCTGCGGTACTGCGCGAAGCACAGCAAAATGCTATGTATAAGGACGGTTA
TCTGCGCGCCTTCGACCCCGCAAGACCTCTGCATTTAGAGTCGTGGGTGC
AGGAAATCGTGAACGCCGACAGGCTGCGGTACTGCGCGAAGCACAGCAAA
ATGCTATGTATAAGGACGGTTATCTGCGCGCCTTCGACCCCGCAAGACCT
CTGCATTTAGAGTCGTGGGTGCAG
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