mRNA_F-serratus_M_contig1117.1080.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1117.1080.1 vs. uniprot
Match: D7FNX3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX3_ECTSI) HSP 1 Score: 171 bits (434), Expect = 1.090e-43 Identity = 137/413 (33.17%), Postives = 192/413 (46.49%), Query Frame = 1
Query: 1 IRSQCGVCALVKELRELDVNGASLLFLAASSRTTSTCFVEVFQVLRAFLGMAGLSEQIEADDHCGRNIMMYAARGKHAETFARVRDLY----KTAFIQVERFAEKWCDRVQKVXXXXXXXXXXXXXXXXXXXXXLVFKMARE---DGIEVHDRMALPDMSERTPIMLFLRSKHGSCDSCEGDSNTKMHRLWLHAPREGWMQQRMVPPVWKLTGNDQGGGDGEEFITLARTELFHAARGGPARLDLTLEYIKRQQKRLRTPNSNEVYLDKVLGMAICSTTPPHGEGQEGLHHELREFLKTPAGRKRLAKSRRETPESEEELRKTVRHWGYGMLLAASVKGGHEEVIKRVVSAIEVGRFLDETETRGGERDSAA--------VVSAINAIKDSGRSLFALAIMSGKPGAAKFVYR 1194
IR Q G ALVK+LR D+NGA LLFLAASSR++ CF V L A LG GL EQ+ A D GR ++MYAARG E F RV ++Y +T E + KV V + R D +H PD + TP+ LR+K+G + + + K +LWLH+ + +M R V P+ G +A TEL HAARGG L L L I+ + + P+S V +++ L + + +G++G +TP E + WG+GMLLAA+ KGGH +V++ VV AI+ G F+++ R ++ A V AI AI SG SLF LA++SGK A +VY+
Sbjct: 93 IRDQLGFNALVKQLRARDINGAPLLFLAASSRSSENCFQTVHDALSAVLGRGGLVEQVAARDGMGRTVVMYAARGNDVEVFHRVWNMYHHHQRTFSAAGEGLGGSPSGALTKVDHTERNVLHHAAEAGCLDVLCEVLLLVRRISGDSKTMHK----PDKNGLTPLHHVLRAKYGEPEGRD-EIRPKFEKLWLHSNKGSFMVPRRVMPM-PCVGRTG-------VAVMAVTELIHAARGGLPSLKLVLAKIRLMKFWRKKPDSAVVTVNEALRVTV--------DGKKGDE---------------------DTPGQGE-----LDAWGWGMLLAAAAKGGHVDVLETVVHAIKTGSFVEDVSERAADQGQATNTCQELEPVDRAIEAILSSGSSLFGLAVLSGKVEAVLWVYQ 458
BLAST of mRNA_F-serratus_M_contig1117.1080.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 114 bits (285), Expect = 1.570e-23 Identity = 131/480 (27.29%), Postives = 191/480 (39.79%), Query Frame = 1
Query: 1 IRSQCGVCALVKELRELDVNGASLLFLAASSRTTSTCFVEVFQVLRAFLGMAGLSEQIEADDHCGRNIMMYAARGKHAETFARVRDLYKTAFIQV---------------------------ERFAEKWCDRVQK----------VXXXXXXXXXXXXXXXXXXXXXLVFKMAREDGIEVHDRMALPDMSERTPIMLFLRSKHGSCDSCEGDSNT--------KMHRLWLHAPRE-----------GWMQQRMVPPVWKLTGNDQGGGDGEEFITLARTELFHAARGGPARLDLTLEYIKRQQKRLRTPNSNEVYLDKVLGMAICSTTPPHGEGQEGLHHELREFLKTPAGRKRLAKSRRETPESEEELRKTVRHWGYGMLLAASVKGGHEEVIKRVVSAIEVGRFLDETETRG-----------GERDSAAVVS-----AINAIKDSGRSLFALAIMSGKPGAAKFVYRNIMLKYFQDQ 1224
IRS+ G+ ALVKELRE D++G LLF AASSR CF + ++ LG G+ EQ EA D GR I+M+AAR H +TF V D + A V ER ++ +K + ++ ++ +E G D + D S RTPIML LR+ CEG+ +T K L+ P E GWMQ + P +L Q T A TEL HAARGG L+L L K + + +V+LD L + +C +G + S+++ +TV WG +LLAA+ + G +V+ V+ AIE F E + G E +A VS + I SLF+LAI+S + A + ++ ++ + +DQ
Sbjct: 76 IRSRVGIHALVKELRETDIDGVPLLFHAASSRRKHCCFRIAYDLVFTVLGKGGVIEQFEALDGLGRGILMHAARSNHVDTFKDVFDKCRKAAESVRLHDQSNAVANDGRIEIPEVPLYGFRGERPSDSTTQTPEKSSNSLLLREVLGTVDRKGMTCLHHAAEAGSSEVLCEVVKECGSHWAD-LGASDRSGRTPIMLVLRNAF----CCEGEEHTCRQTDLEDKFGILFDEIPLEPIRATGGHRYIGWMQPSRIQPQ-RLPAPKQ-----TPVETRAVTELIHAARGGVVSLELALNKALPNSKT-DSEDGFKVHLDSALAVEVCI---------DGSWRQ-----------------------SQDDHHRTV-IWGRALLLAAAARLGDVDVLYHVLVAIEDDEFFLEADDAGKFRLPERPIPVDETPTAIPVSNKLREVLGMINSRNVSLFSLAILSRRHEAVELIFDLVVRLFGEDQ 510
BLAST of mRNA_F-serratus_M_contig1117.1080.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 108 bits (271), Expect = 8.610e-22 Identity = 119/441 (26.98%), Postives = 187/441 (42.40%), Query Frame = 1
Query: 1 IRSQCGVCALVKELRELDVNGASLLFLAASSRTTSTCFVEVFQVLRAFLGMAGLSEQIEADDHCGRNIMMYAARGKHAETFARVRDLYKTAFIQVERFAEKWCDRVQKVXXXXXXXXXXXXXXXXXXXXXLVFKMAREDGIEVHDRMALPDMSERTPIMLFLR--SKHGSCDSCEGDSNTKMH------------RLWLHA---PREGWMQQRMVPPVWKLTGNDQGGGDGEEFITLAR--TELFHAARGGPARLDLTLEYIKRQQKRLRTPNSNEVYLDKVLGMAICSTTPPHGEGQEGLHHELREFLKTPAGRKRLAKSRRETPESEEELRKTVRHWGYGMLLAASVKGGHEEVIKRVVSAIEVGRFLDET----------ETRGGER---DSAAVVSAINAIKDSGRSLFALAIMSGKPGAAKFVYRNIMLKYFQDQP 1227
IRS+ GV AL KELRELD++ A LLF AA+SR +CF ++ LG GL EQ+ A D GR ++M+AAR +++ + + +Y F V + + ++ K ++ K + G +R D + RTP+M L S+ D D T ++ ++ H ++GWM+ VP +++ +++ I+ AR TEL HAARGG L+L L RL + LD L + C + P S+E + WG G+LLAA+ + G +V+ V++AI+ +F E E+R E D V + + + G+SLF+ AI+SG+ A K VYR I+ + + P
Sbjct: 85 IRSKMGVRALAKELRELDIDRAPLLFNAAASRGEKSCFRTAHDLVYKALGKGGLLEQLGAVDGEGRTMLMHAARSNNSDAYDEIVGIY---FKVVPLTSSGYTEKDHK---GMNCLHHAAEAGCSEVLGKVIKKYSDAGGSSYAER----DNNNRTPVMCVLSDASREERADDSLRDKFTLLYSNMSTTCGEQDEKVCTHDGGHAKQGWMEMTDVP-TQQISRSEE--------ISKARGVTELMHAARGGLVSLELALNE-PLPSSRLE---DGSISLDGALNVEAC-----------------------------------DEPASDEPRWEPQPAWGKGLLLAAAAERGDIDVLHVVLTAIKDNKFTKEPNTDRFTLRKQESRLAELPYGDGEKVRTVVREMSKGGKSLFSEAILSGQTVAVKHVYRLIVKLFGKTHP 467
BLAST of mRNA_F-serratus_M_contig1117.1080.1 vs. uniprot
Match: A0A6H5JNN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN7_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.550e-20 Identity = 125/445 (28.09%), Postives = 173/445 (38.88%), Query Frame = 1
Query: 1 IRSQCGVCALVKELRELDVNGASLLFLAASSRTTSTCFVEVFQVLRAFLGMAGLSEQIEADDHCGRNIMMYAARGKHAETFARVRDLYKTAFIQVERFAEKWCDRVQKVXXXXXXXXXXXXXXXXXXXXXLVFKMAREDGIEVHDRMALPDMSERTPIMLFLRSKHGSCDSCEGDSNTKMHRLWL--------------------HAPREGWMQQRMVPPVWKLTGNDQGGGDGEEFITLAR--TELFHAARGGPARLDLTLEYIKRQQKRLRTPNSNEVYLDKVLGMAIC---STTPPHGEGQEGLHHELREFLKTPAGRKRLAKSRRETPESEEELRKTVRHWGYGMLLAASVKGGHEEVIKRVVSAIEVGRFLDETET-----------RGGERDSAAVVSAINAIKDSGRSLFALAIMSGKPGAAKFVYRNIMLKYFQDQP 1227
IRS+ GV AL KELRELD++ A LLF AA+SR ++CF ++ LG GL EQ+EA D GR ++M+AAR F + +Y A D K ++ K + G +R D + RTP+M L + D GDS K L HA +EGWM+ V LT Q E AR TEL HAARGG L+L L RL + LD L + C ++ P E Q PA WG G+LLAA+ + G +V+ V++AI+ G F + R G V + + + G+SLF+ AI+SG+ A + VY I+ + + P
Sbjct: 93 IRSKIGVRALAKELRELDIDRAPLLFNAAASRGETSCFRTAHDLVYKALGKGGLIEQLEAVDGEGRTMLMHAARSNDGNAFDEIVGIYSKAVPLTSS------DYTAKDRKGMNCLHHAAEAGCSEVLGKVIKKYSDAGGSSYAER----DNNNRTPVMYVLSD--ATRDVRAGDSLLKKFTLLYSNMPTTCGKQDEKVSVDPGEHA-KEGWMEMTDV-----LTQRIQIS-KSHEITRKARGVTELMHAARGGLGSLELALNE-PLPSSRLA---DGSISLDIALNVKACDEAASDKPRWEPQ-------------PA-------------------------WGKGLLLAAAAERGDIDVLHIVLTAIQDGVFTKKPNADRFTLRRHEGRRAGLPFGENVKTVVREMSKGGKSLFSQAILSGRTVAVEHVYLLIVKLFGETDP 476 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1117.1080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1117.1080.1 >prot_F-serratus_M_contig1117.1080.1 ID=prot_F-serratus_M_contig1117.1080.1|Name=mRNA_F-serratus_M_contig1117.1080.1|organism=Fucus serratus male|type=polypeptide|length=415bp IRSQCGVCALVKELRELDVNGASLLFLAASSRTTSTCFVEVFQVLRAFLGback to top mRNA from alignment at F-serratus_M_contig1117:122603..124600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1117.1080.1 ID=mRNA_F-serratus_M_contig1117.1080.1|Name=mRNA_F-serratus_M_contig1117.1080.1|organism=Fucus serratus male|type=mRNA|length=1998bp|location=Sequence derived from alignment at F-serratus_M_contig1117:122603..124600- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1117:122603..124600- >mRNA_F-serratus_M_contig1117.1080.1 ID=mRNA_F-serratus_M_contig1117.1080.1|Name=mRNA_F-serratus_M_contig1117.1080.1|organism=Fucus serratus male|type=CDS|length=2490bp|location=Sequence derived from alignment at F-serratus_M_contig1117:122603..124600- (Fucus serratus male)back to top |