mRNA_F-serratus_M_contig1117.1078.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI) HSP 1 Score: 377 bits (968), Expect = 3.080e-123 Identity = 204/391 (52.17%), Postives = 256/391 (65.47%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSVLDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQECLWQYKNKNG------ERTKFTPATSTYGWFTFEGFLQRGAFALTMGVAALALSALLWIISLPWIAWSLLRW--FRPWDQPRGDEGEEASSNERQGHFRTFFFTLFRACAWILALAFAVFMCALCCIGSIILWARGLWGIAEWSCWRLTEEGRAVSGEAESSCPTAMPGQERGDHWRHAWS-VVQARNYRIRQESGSVHFHVAPLLKSTKGLDMKRLVMLVKKR 1146
I+WR+MS TLRF FIVVV+ +ALAF +F +C S+L E FG+F A LSVF A LGEF + F D C +NPAP AG LL YLV++AVV+LNLL+AVL++ H +V++ GE EFHLARTRLILQ++ AV HRRIP P NL+ +G L D V E W + G E F P T+TYGW TF+G LQR F LTMG+ A+AL++LLW++SLPW+AW L+ W + ++ DE EE ++ ++G R L A LAL FA +C C +GS LW RG+W + EW WR +EEG+ VSGE + CPTAMPGQE G +WRHAW V +ARN RIR E GS HFHVAPLL+ST GLDMKRL L KK+
Sbjct: 4 IIWRMMSQTLRFGVFIVVVMAGFALAFTTVFGSCNADSLLGESFGSFGTAFLSVFEAPLGEFS--FEDFHDVGTQCPDNPAPGRASDAGTFLLVAYLVVLAVVMLNLLVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWVRLDAGRCKLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETNAPVKRGKLRESLLALGTIAACWLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRSEEGKFVSGETDQECPTAMPGQEHGQNWRHAWQHVAKARNLRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKK 392
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 373 bits (957), Expect = 1.170e-113 Identity = 204/395 (51.65%), Postives = 266/395 (67.34%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSVLDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQECLW---QYKNKNGERT---KFTPATSTYGWFTFEGFLQRGAFALTMGVAALALSALLWIISLPWIAWSLLRW--FRPWDQPRGDEGEEASS---NERQGHFRTFFFTLFRACAWILALAFAVFMCALCCIGSIILWARGLWGIAEWSCWRLTEEGRAVSGEAES-SCPTAMPGQERGDHWRHAWS-VVQARNYRIRQESGSVHFHVAPLLKSTKGLDMKRLVMLVKKR 1146
I+WR++S TLRF FIVVV+ +ALAF+A+F +C GS LDE +G+F A L+VF A LGEF + F D C NP+P AG LL YLV++AVV+LNLLIAVLS+ H +V + GE EFHLARTRLILQ++ AV HRRIP PFNL+ +GFL DGV E W + ++ G R F P T TYGW TF+G LQR FA TMG+ A+ L+ALLW++SLPW+AW ++ W ++ + DE E S +++G FR F + A + AL FAV +C +C GS +LW RG+ + EW+ WRL+EEGR VSGE + +CPTAMPGQERG +WRHAW V +ARN+RIR E S HFHVAPLL++T GLDM++ +L K++
Sbjct: 1177 IIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAGSDLDESYGSFGTAFLTVFKAPLGEFK--FEDFDDVGGQCPYNPSPGRASDAGTFLLVAYLVVLAVVMLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRGADRCGLRQHKESFAPITYTYGWHTFDGMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCWVLYKVVETGDPDEVETFLSVRLRDKKGKFRAFLWVFLGIIACVFALGFAVALCGVCVAGSFVLWLRGVCNVFEWAHWRLSEEGRFVSGETKKGTCPTAMPGQERGSNWRHAWKYVAKARNFRIRHEHDSEHFHVAPLLQATTGLDMEQFCLLAKEK 1569
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 253 bits (647), Expect = 1.280e-71 Identity = 172/465 (36.99%), Postives = 230/465 (49.46%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGS------------VLDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQECL----WQYKNKNGERTKFTPA--------------------------------------------------TSTYGWFTFEGFLQRGAFALTMGVAALALSALLWIISLPWIAWSLLRWFRPWDQPRGD--EGEEASSNE---------------RQGHFRTFFFTLFRACAWILALAFAVFMCALCCIGSIILWARGLWGIAEWSCWRLTEEGRAVSGEAESSCPTAMPGQERGDHWRHAWSVVQARNYRIRQESGSVHFHVAPLLKSTKGLDMKRLVMLVKKR 1146
++WR++S TLRFSAFI VV+ S+ALAFHA+F TCGE L + FGTF + ++VF AALG G + + A C P + AG+ L+ Y+VIMAVVLLNLLIAVLS+ H KV G+ EFHLAR +LI Q++ V RR P P NL+ +G L D E + W +N + + PA T T+ W TFEG +QR FA T G AA+ +SA+LW +S+PW+AW LLR P + R + E EE +N+ G+FR F T + ++A A A +CAL + S++LW GL I +W T E + P AMPGQE GDHW+ AW +V RN+ +R++ HF+V P LKS GLD + L L K R
Sbjct: 1246 VIWRMISDTLRFSAFISVVMLSFALAFHAVFHTCGEFEDPTCNTNDDPDFPLRDAFGTFGRSFVTVFSAALG--GPDFELYEAAGSEC-RCKLPDGAQEAGIFLMVVYMVIMAVVLLNLLIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTEPVRFRRWMVRNPPEDENEANPADGAXXXXXXXXGHENDAVEGEAEGDQGNIGGGSPGDCPIAGTPGDEFIAWTQTHEWRTFEGGVQRVLFAFTFGAAAIVMSAILWTLSVPWVAWCLLRLAHPVVEKRAENLEDEEDDTNQGLGDIEEEEEMKEKVHPGYFRRIFITFLWSAVLVVATAVAAILCALYILFSVVLWFVGLHMIYKWVRTNWTPES--------NDRPRAMPGQEEGDHWQRAWDLVSLRNHGVREDFDQAHFNVLPFLKSKTGLDRQHLAWLTKAR 1699
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 241 bits (616), Expect = 1.700e-67 Identity = 164/426 (38.50%), Postives = 215/426 (50.47%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSV------------LDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQEC----LWQYKNKNGERTKFTPATSTYGWFTFEGFLQRGAFALTMGVAALALSALLWIISLPWIAWSLLRWFRPWDQPRG------------------DEGEEA----------SSNERQGHFRTFFFTLFRACAWILALAFAVFMCALCCIGSIILWARGLWGIAEWSCWRLTEEGRAVSGEAESSCPTAMPGQERGDHWRHAWSVVQARNYRIRQESGSVHFHVAPLLKSTKGLDMKRLVMLVKKR 1146
++WR+MSHTLRFSAFI +V+ S+ALAFHA+F TCGE S L + FGTF + ++VF ALG G +AF A C + P +AG+ LL Y++ M VVLLNLLIAVLS+ H KV + E EFH AR RLI Q++ V R P P NLI G L D E +W + ++ R P ++T+ W T EG LQR FA T GVAA+ LS +LWI+S+PW+AW L R ++ D+G G+FR F + C+ ++A+ A F+C L ++ILWA G+ + P MPGQE G HW+ AW + RN R G HFH+APLLKS GLDM+ L L K R
Sbjct: 1181 VIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDAFPLRDAFGTFGDSFVTVFTYALG--GPDFEAFQLAGSDCRCD-LPEGARNAGIFLLVVYMITMTVVLLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDAGTEVWRVGVWVTRGRSQARM-LKPFSTTHQWKTLEGGLQRLEFAFTFGVAAVGLSTILWIVSVPWVAWCLHRLVHKAEEETXXXXXXXXXXXXXXXXXERDDGXXXXXXXXXXXXXKEKPHLGYFRRFLSGIKSMCSLLVAMVAASFLCLLYIFATMILWAVGIXXXXX--------XXXXXXDKKNGDMPEPMPGQEDGHHWKRAWELASLRNQGARANRGQAHFHIAPLLKSKTGLDMQHLAQLTKNR 1594
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE) HSP 1 Score: 179 bits (453), Expect = 4.590e-46 Identity = 147/387 (37.98%), Postives = 184/387 (47.55%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSVLDEKFGTFAAALLSVFGAALGEFGD-ILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQECLWQ----YKNKNGERTKFTPATSTYGWFTFEGFLQRGAFALTMGVAALALSALLWIISLPWIAWSLLRWFRPWDQPRGDEGEEASSNERQGHFRTFFFTLFRACAWILALAFAVFMCALCCIGSIILWARGLWGIAEWSCWRLTEEGRAVSGEAESSCPTAMPGQERGDHWRHAWSVVQARNYRIRQESGSVHFHVAPLLKSTKGLDMKRLVMLVKKR 1146
++WR+MSHTLRFSAFI +V+ S+ALAFHA+F TCGE E TF A G FGD + F D C N P +AG+ LL Y+V M VVLL LLIAVLS+ H KV E EFH AR I Q++ V R P P NLI G L D LW+ ++ + P ++++ T EG LQR FA T GVAA+ LSA+LWI+S+PW+ L GE AS +T F + + ++A+ A F+C L ++ILWA G+W I W G AES R R HF VAPLLKS GLDMK L L K R
Sbjct: 518 VIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEHI---EPQCTFDDDDAFPIRDAFGTFGDSFVTVFTD----CRCN-LPEGARNAGIFLLVVYMVTMTVVLLKLLIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLDA-GTMLWRAGAWFRRGRSQAKMLKPFSTSHQRKTLEGGLQRLEFAFTFGVAAVGLSAILWIVSVPWVDSCLHCLVHK-------AGEAAS-----WLLQTIFSGIRSMFSLLIAMVAASFLCVLYVFATMILWAVGIWMIVTW--------GLGACQPAES---------------------------RARANRAQAHFRVAPLLKSKTGLDMKHLAQLTKNR 848
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 149 bits (376), Expect = 1.030e-35 Identity = 90/184 (48.91%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSV------------LDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQECLWQY 516
++WR+MSH LRFSAFI +V+ S+ALAFHA+F TCGE S L + FGTF +LL+VF +ALG G D F DA C N PR SAG+ ++ Y + M+VVLLNLLIAVLS+ H +V E EFHLAR RL++Q++ +V HRR P P NL+ G G L D E +W++
Sbjct: 1047 VIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEHSEPQCTLDDDDAFPLRDAFGTFGDSLLTVFSSALG--GPEFDLFDDAGSDCRCN-LPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTE-IWRF 1226
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.600e-33 Identity = 87/184 (47.28%), Postives = 115/184 (62.50%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSV------------LDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQECLWQY 516
++WR+MSH LRFSAFI +V+ S+ALAFHA+F TCGE S L + FGTF + ++VF +ALG G +D F D C N PR SAG+ ++ Y + M+VVLLNLLIAVLS+ H +V E EFHLAR RL++Q++ +V H R P P NLI G G L D E +W++
Sbjct: 415 VIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDPFPLRDAFGTFGDSFVTVFSSALG--GPEIDLFDDVGSDCRCN-LPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTE-IWRF 594
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D8LH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH98_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.570e-27 Identity = 75/209 (35.89%), Postives = 101/209 (48.33%), Query Frame = 1
Query: 571 WFTFEGFLQRGAFALTMGVAALALSALLWIISLPWIAWSLLRWFRPWDQPRGDEG------------------------EEASSNERQGHFRTFFFTLFRACAWILALAFAVFMCALCCIGSIILWARGLWGIAEWSCWRLTEEGRAVSGEAESSCPTAMPGQERGDHWRHAWSVVQARNYRIRQESGSVHFHVAPLLKSTKGLDMKRL 1125
W EGFLQR AFA TMG A+L + +LWI S+PW+AW LR P + G+EG E +N G+ R + + ++++AFA C L +GS ILW G + + W W R + P AMPGQE G HW +AW + RN+ IR++ HF+V P LKS GLDM+ L
Sbjct: 252 WIAVEGFLQRLAFAFTMGGASLVVFTMLWIFSVPWVAWCFLRSLLPPED--GEEGFHLDTIKMIKTCSCWKGGKGVNIRSEEENNSSPGYVRELLWVVCALVVMMVSMAFAAVFCLLYIVGSGILWILGTFRLLVWG-WNNCSRKR------DDKNPEAMPGQEDGSHWENAWKLANLRNHGIREDREHPHFYVVPFLKSKTGLDMQHL 451
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 111 bits (277), Expect = 8.470e-23 Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSVLDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEH 348
I+WR++S TLRF FIVVV+ +ALAF+A+F +C GS LDE +G+F ALL+VF A LGEF + F D C NP+P AG LL YL+++AVV+LNLLIAVLS+ H
Sbjct: 1175 IIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAGSGLDESYGSFGTALLTVFKAPLGEFK--FEDFDDVGGQCPYNPSPGRASDAGTFLLVAYLIVLAVVMLNLLIAVLSTAH 1288
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI) HSP 1 Score: 108 bits (270), Expect = 7.300e-22 Identity = 68/177 (38.42%), Postives = 103/177 (58.19%), Query Frame = 1
Query: 1 ILWRLMSHTLRFSAFIVVVLTSYALAFHAIFA--TCGEGSVLDEKFGTFAAALLSVFGAALGEFGDILDAFADAEEYCAENPAPRLLESAGVVLLSTYLVIMAVVLLNLLIAVLSSEHQKVSSKGEMEFHLARTRLILQNSLAVVHRRIPAPFNLILAGIGFLFDGVQE-CLWQYKN 522
I+W ++ H RFS F++VV+ S+ALAFH++++ C EG L E + T +LL +F + LG+ D F P+ AG+ LL+ Y+V+ A+++LNLLIAVLS+ H VS EFHLAR++ I ++ +V R+P P NL++A I + D E C W K+
Sbjct: 1485 IIWNMLFHLARFSVFMLVVMVSFALAFHSLYSDPNCSEGDELFESYRTLRESLLDMFRSMLGDAN--FDRFEADRNLTCTGPSWEF--DAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKS 1657 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1117.1078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1117.1078.1 >prot_F-serratus_M_contig1117.1078.1 ID=prot_F-serratus_M_contig1117.1078.1|Name=mRNA_F-serratus_M_contig1117.1078.1|organism=Fucus serratus male|type=polypeptide|length=377bp MSHTLRFSAFIVVVLTSYALAFHAIFATCGEGSVLDEKFGTFAAALLSVFback to top mRNA from alignment at F-serratus_M_contig1117:113235..115797- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1117.1078.1 ID=mRNA_F-serratus_M_contig1117.1078.1|Name=mRNA_F-serratus_M_contig1117.1078.1|organism=Fucus serratus male|type=mRNA|length=2563bp|location=Sequence derived from alignment at F-serratus_M_contig1117:113235..115797- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1117:113235..115797- >mRNA_F-serratus_M_contig1117.1078.1 ID=mRNA_F-serratus_M_contig1117.1078.1|Name=mRNA_F-serratus_M_contig1117.1078.1|organism=Fucus serratus male|type=CDS|length=2262bp|location=Sequence derived from alignment at F-serratus_M_contig1117:113235..115797- (Fucus serratus male)back to top |