mRNA_F-serratus_M_contig1116.1076.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1116.1076.1
Unique NamemRNA_F-serratus_M_contig1116.1076.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 134 bits (336), Expect = 7.130e-34
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    1 YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTGKA-SLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            + LG  I  DR  R ++ +Q  Y +T+ ERF  +    +  P  ++  LS+ADGP++D + AEM   PYR  +G L +VA  TRPD+A+    LS+F +NPGP HW A ++ L+YLK T   G++YGG  E+     + DAD  +  D RRSVSG  +M+ GG I
Sbjct:  223 HLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPI 387          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A146IDX7_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IDX7_MYCCL)

HSP 1 Score: 134 bits (336), Expect = 3.140e-33
Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTG-KASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            + LG  + R+R  RT+T  Q  Y   + E+FG+     + VP      LS    P +D E  +M  +PYRE +G L+W++  TRPDLA+T  TLS+F  NPG  HW A  + LQYLK T +LG+TYGG+ E + L+ + DAD  S  D R++VSG    L GG++
Sbjct:  978 WLLGMEVKRNRAERTLTLTQSTYIDALIEKFGMSNAKPLSVPLDPNHQLSIEQCPTSDTEKLDMKKVPYRELIGGLVWLSTATRPDLAFTVTTLSRFISNPGRPHWDAAKRVLQYLKGTRTLGLTYGGSAEKLGLNIFADADGMSLED-RKAVSGYVFTLNGGSV 1141          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A5D6XRE8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRE8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.970e-33
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    1 YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTGKAS-LSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGAT------EDMKLSAWVDADHASCPDTRRSVSGGAVML 477
            Y +G +  RDRK RT+   Q+ YA TV +RF       + +PT K+  L++A  P    +  EM  +PYR+AVG++M++   TRPD AY    +S+F  NPG E+W AV   L+YLK T +LG+T GG        +   LSA+ DA +A+C DTRRS+ G   +L
Sbjct:  122 YLIGWNTVRDRKQRTIHIHQENYANTVFKRFNHLDAQTVSIPTDKSIVLTQAMCPSTKEKTEEMANVPYRDAVGSVMYLIMSTRPDHAYFLREVSQFHVNPGREYWNAVKHGLKYLKGTTALGITLGGRENLTLLEKKTFLSAYTDASYANCKDTRRSIGGYITLL 287          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A146HBL6_MYCCL (Uncharacterized protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HBL6_MYCCL)

HSP 1 Score: 126 bits (317), Expect = 1.080e-32
Identity = 68/159 (42.77%), Postives = 94/159 (59.12%), Query Frame = 1
Query:   19 ITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTGK-ASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            + RDRK RT+T  Q  Y   + E+FG+     I VP     +LS    P +DA   +M  +PYRE +GAL+W++  TRPDLA+T   LS+F  NPG  HW A  + LQYLK T +LG+T+GG+     L+ + DAD  S  + R+++SG    L G AI
Sbjct:    3 VRRDRKRRTLTLTQSTYVDALMEKFGMTDAKPISVPLAPDQNLSVEQCPTDDATKLQMKKLPYRELIGALVWLSTATRPDLAFTVAVLSRFVSNPGRAHWDAAKRTLQYLKGTRTLGLTFGGSETKFGLNIFADADGMSM-ENRKAISGYVFTLNGAAI 160          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A329RH08_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RH08_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.310e-32
Identity = 72/171 (42.11%), Postives = 98/171 (57.31%), Query Frame = 1
Query:    1 YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTGK-ASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDM------KLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            Y LG  I  DRK RT+   Q +YA  V + F       I  P  + A LS +  P +DAE  EM  IPYREAVG++M++   TRPD+A+    +S+F  NPG EHW  +++ L+YL  T   G+  GG+T+         L A+ D+D+++CPDTRRSV G   ML G  I
Sbjct:    2 YLLGWPIQCDRKNRTIFIYQHKYATKVLDGFSDYIPYPIATPADRSAKLSLSSQPSSDAEKDEMKDIPYREAVGSVMYLMVGTRPDMAFYLREVSQFLANPGMEHWNPIVRGLKYLSGTKDYGLLLGGSTDITPQNLANSLIAYSDSDYSNCPDTRRSVGGYITMLAGSPI 172          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI)

HSP 1 Score: 129 bits (323), Expect = 1.750e-31
Identity = 67/165 (40.61%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPT-GKASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            Y++G  I RDR  +T+   Q  Y   V E+FG+     I  P      LS++  P++D     M  IP+REAVG+LM+ A ++RPD+ +    +S++ +NPGPEHW+AV + ++Y K+TA+ G+ Y G   +  L  + D+D+AS PDTRRS SG   +L GGA+
Sbjct:  942 YFVGFKIKRDRSKKTIKISQCNYLLRVAEKFGMMDAKGISTPAESHMYLSKSMAPEDDDGKQAMAKIPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGPEHWQAVKRIIRYAKETATYGIVYDGQNTN-GLIVYSDSDYASDPDTRRSTSGYITVLAGGAV 1105          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.120e-31
Identity = 72/165 (43.64%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    7 LGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVP-TGKASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGA--TEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            LG  I R+R  RT+   Q RY +TV ERF +  ++ +  P     +LS++       +I+ M   PYR  VG+ M++A  TRPDLA+    LS+F DNPGP HW+A  +AL+YL  T S G+  GG+    +  LSA+VDAD+A+CPDTRR VSG  ++  G  I
Sbjct:  565 LGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPI 729          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.370e-31
Identity = 72/165 (43.64%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    7 LGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVP-TGKASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGA--TEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            LG  I R+R  RT+   Q RY +TV ERF +  ++ +  P     +LS++       +I+ M   PYR  VG+LM++A  TRPDLA+    LS+F DNP P HW+A  +AL+YL  T S G+  GG+    +  LSA+VDAD+A+CPDTRR VSG  ++  G  I
Sbjct: 1709 LGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPI 1873          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: UPI0004417247 (hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004417247)

HSP 1 Score: 124 bits (310), Expect = 5.370e-31
Identity = 67/163 (41.10%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    7 LGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTG-KASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGGAI 492
            L   ITRDR  R ++ DQ+RY Q + + FG+   S +  P      LS +  P+   E AEM G+PY  AVGAL+++A  TRPD+A+    LS+F  NPGP HW AV    +YLK T    +T+         +++VDADH   PD  RS SG  + +G GA+
Sbjct:   64 LAVGITRDRAKRRLSMDQRRYTQDMLDTFGMTDCSPVLTPMDPNTRLSASMSPQTPEEKAEMVGVPYINAVGALLYLAIATRPDIAHAVGVLSRFSKNPGPRHWTAVKHLFRYLKGTLDYKLTFWPDESGEPFTSFVDADHGGNPDDGRSTSGFVLKIGSGAV 226          
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 119 bits (299), Expect = 5.600e-31
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    1 YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVI--PVPTGKASLSRADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNPGPEHWKAVMKALQYLKQTASLGVTYGGATEDMKL-SAWVDADHASCPDTRRSVSGGAVMLGGG 486
            + LG  + RDR  R ++  Q++Y   + ERF +   + +  P+P G   LS+A  PK+  EIA M  +PYR+ VGALM++A  TRPD++Y    L++F  NPGP HWKA     +YL+ T  + +TY       +L + + DADH    D RRS SG  V +G G
Sbjct:   32 FLLGVRVERDRSKRLLSLSQRQYITDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTG 195          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1116.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CTN1_PYTOL7.130e-3441.82Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A146IDX7_MYCCL3.140e-3342.42Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A5D6XRE8_9STRA8.970e-3341.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146HBL6_MYCCL1.080e-3242.77Uncharacterized protein n=1 Tax=Mycena chlorophos ... [more]
A0A329RH08_9STRA1.310e-3242.11Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A0J7KA47_LASNI1.750e-3140.61Retroelement pol polyprotein n=1 Tax=Lasius niger ... [more]
A0A6G0W6P6_9STRA3.120e-3143.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W780_9STRA3.370e-3143.64Integrase catalytic domain-containing protein n=3 ... [more]
UPI00044172475.370e-3141.10hypothetical protein n=1 Tax=Punctularia strigosoz... [more]
A0A4S4K4A0_9AGAM5.600e-3140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1116contigF-serratus_M_contig1116:54000..54491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue3.4e-27
Seed eggNOG ortholog67593.Physo133076
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.2505753-CDS-F-serratus_M_contig1116:53999..544911622929002.2505753-CDS-F-serratus_M_contig1116:53999..54491Fucus serratus maleCDSF-serratus_M_contig1116 54000..54491 +
1690962664.1572511-CDS-F-serratus_M_contig1116:53999..544911690962664.1572511-CDS-F-serratus_M_contig1116:53999..54491Fucus serratus maleCDSF-serratus_M_contig1116 54000..54491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1116.1076.1prot_F-serratus_M_contig1116.1076.1Fucus serratus malepolypeptideF-serratus_M_contig1116 54000..54491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1116.1076.1

>prot_F-serratus_M_contig1116.1076.1 ID=prot_F-serratus_M_contig1116.1076.1|Name=mRNA_F-serratus_M_contig1116.1076.1|organism=Fucus serratus male|type=polypeptide|length=164bp
YYLGCHITRDRKARTVTFDQQRYAQTVTERFGIRKTSVIPVPTGKASLSR
ADGPKNDAEIAEMHGIPYREAVGALMWVANMTRPDLAYTAHTLSKFGDNP
GPEHWKAVMKALQYLKQTASLGVTYGGATEDMKLSAWVDADHASCPDTRR
SVSGGAVMLGGGAI
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mRNA from alignment at F-serratus_M_contig1116:54000..54491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1116.1076.1 ID=mRNA_F-serratus_M_contig1116.1076.1|Name=mRNA_F-serratus_M_contig1116.1076.1|organism=Fucus serratus male|type=mRNA|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig1116:54000..54491+ (Fucus serratus male)
TACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGTGAC GTTCGATCAGCAGCGTTACGCGCAGACGGTAACCGAGCGATTCGGAATTC GAAAGACCAGCGTGATCCCTGTTCCTACGGGGAAAGCGTCACTTTCGAGG GCAGACGGGCCGAAAAACGACGCTGAGATCGCAGAGATGCATGGCATCCC GTATCGCGAGGCAGTGGGGGCACTAATGTGGGTAGCCAACATGACTCGGC CTGACCTAGCTTACACCGCGCACACGCTCTCCAAGTTCGGTGACAACCCC GGGCCCGAGCACTGGAAGGCAGTAATGAAAGCGCTACAGTACCTGAAACA AACGGCGAGCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATGAAGC TATCGGCATGGGTGGACGCCGATCACGCATCATGCCCTGATACGCGCCGT TCGGTATCGGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1116:54000..54491+

>mRNA_F-serratus_M_contig1116.1076.1 ID=mRNA_F-serratus_M_contig1116.1076.1|Name=mRNA_F-serratus_M_contig1116.1076.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig1116:54000..54491+ (Fucus serratus male)
TACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGTGAC
GTTCGATCAGCAGCGTTACGCGCAGACGGTAACCGAGCGATTCGGAATTC
GAAAGACCAGCGTGATCCCTGTTCCTACGGGGAAAGCGTCACTTTCGAGG
GCAGACGGGCCGAAAAACGACGCTGAGATCGCAGAGATGCATGGCATCCC
GTATCGCGAGGCAGTGGGGGCACTAATGTGGGTAGCCAACATGACTCGGC
CTGACCTAGCTTACACCGCGCACACGCTCTCCAAGTTCGGTGACAACCCC
GGGCCCGAGCACTGGAAGGCAGTAATGAAAGCGCTACAGTACCTGAAACA
AACGGCGAGCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATGAAGC
TATCGGCATGGGTGGACGCCGATCACGCATCATGCCCTGATACGCGCCGT
TCGGTATCGGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCTACTACCT
GGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGTGACGTTCGATC
AGCAGCGTTACGCGCAGACGGTAACCGAGCGATTCGGAATTCGAAAGACC
AGCGTGATCCCTGTTCCTACGGGGAAAGCGTCACTTTCGAGGGCAGACGG
GCCGAAAAACGACGCTGAGATCGCAGAGATGCATGGCATCCCGTATCGCG
AGGCAGTGGGGGCACTAATGTGGGTAGCCAACATGACTCGGCCTGACCTA
GCTTACACCGCGCACACGCTCTCCAAGTTCGGTGACAACCCCGGGCCCGA
GCACTGGAAGGCAGTAATGAAAGCGCTACAGTACCTGAAACAAACGGCGA
GCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATGAAGCTATCGGCA
TGGGTGGACGCCGATCACGCATCATGCCCTGATACGCGCCGTTCGGTATC
GGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATC
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