mRNA_F-serratus_M_contig1115.1074.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1115.1074.1
Unique NamemRNA_F-serratus_M_contig1115.1074.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1115.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1115contigF-serratus_M_contig1115:89752..94057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.7159379-CDS-F-serratus_M_contig1115:89751..899691622929000.7159379-CDS-F-serratus_M_contig1115:89751..89969Fucus serratus maleCDSF-serratus_M_contig1115 89752..89969 -
1690962663.692582-CDS-F-serratus_M_contig1115:89751..899691690962663.692582-CDS-F-serratus_M_contig1115:89751..89969Fucus serratus maleCDSF-serratus_M_contig1115 89752..89969 -
1622929000.7286594-CDS-F-serratus_M_contig1115:93843..940571622929000.7286594-CDS-F-serratus_M_contig1115:93843..94057Fucus serratus maleCDSF-serratus_M_contig1115 93844..94057 -
1690962663.7039292-CDS-F-serratus_M_contig1115:93843..940571690962663.7039292-CDS-F-serratus_M_contig1115:93843..94057Fucus serratus maleCDSF-serratus_M_contig1115 93844..94057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1115.1074.1prot_F-serratus_M_contig1115.1074.1Fucus serratus malepolypeptideF-serratus_M_contig1115 89752..94057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1115.1074.1

>prot_F-serratus_M_contig1115.1074.1 ID=prot_F-serratus_M_contig1115.1074.1|Name=mRNA_F-serratus_M_contig1115.1074.1|organism=Fucus serratus male|type=polypeptide|length=144bp
LPHQPANSPAQQHTSSQLRPPLRFDHDVRDDFYGAHRTAHSRDHQPHQGP
DCWVLGHDQQLLLLRTKHFSQGVVANGHEGVYSATRAPSNDRYRRGESPR
RRRGRIYTSTEAGYPGQPTGLSCTMELRCLCLRLRRVCVCVCV*
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mRNA from alignment at F-serratus_M_contig1115:89752..94057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1115.1074.1 ID=mRNA_F-serratus_M_contig1115.1074.1|Name=mRNA_F-serratus_M_contig1115.1074.1|organism=Fucus serratus male|type=mRNA|length=4306bp|location=Sequence derived from alignment at F-serratus_M_contig1115:89752..94057- (Fucus serratus male)
CTACCCCACCAACCAGCAAACTCGCCTGCCCAGCAGCACACTTCTTCGCA
GTTACGTCCTCCTTTGAGGTTTGATCACGATGTTCGAGATGATTTCTATG
GTGCTCATCGCACTGCTCATTCCCGTGATCATCAGCCTCATCAGGGGCCC
GATTGCTGGGTACTTGGACACGATCAACAACTACTTCTTCTACGGACGAA
GCATTTTTCCCAGGGTGAGAAATAGCACGTCGTGTTCCTTCGGTGGAAAG
CAACCGGTACGTGACTATGACTAACATTTCCGTCACAAAACATTCCGTCG
TGTGCGGTCACAAGCTGCCCTTTCGGGGGCAGCAGCAGCTATATTAGGTA
CCCTGGTAGTTTGTTTCTTATCCAGACCTCTAGAGCTTATGCCAGGGCTA
ATCTCAGTAGACCGCAACGATCAACGCAATTTTTGAGAAGATATCTCGTG
GTGTGCTCTACAGTATCACTGTACTCGTACAGGGGAAACTGTTTCTGCTC
TTCGAAGTTGATCAAGGTTGCGTCGTTCGTTGATACGGCATAGTAAACTA
CTTTTTACTATTGCGTCAAGCTGTTTCGACAAAATTCGAGCGGAACAGGA
GTGATTTCCATGTCATGTTTCGTCGGGTAAAAGTATAGACCTACCGCAGT
ACACAGTGCGTGTTACCAGCCGCCGCTCGAGTACTACAGCAATCCACCCA
CTCAATCAAAGAGGGATCGAAATCCCAACGAAACCCTTGCCGACCGAACT
TGCCGGCGTCAACAAGGTGTTTCCGGGTACAATCTACAGTTCCTAGTGTC
TGGAGTGCTGCCAGTATTTCAGAGCCTGAATTACAAGCTACCAGTACAGA
GAAGACGGGACTGTCTGATGTGCTGCTCATCGAACAAAATCGCTCCAAAA
CACATCCATCCTGGCTATCAGCGAGTTACACAAATACAAGCAATGGCGCC
GACCAATGTCAAAATGGTTCATCAAACAAACCTCATTACCCCATATCGAG
AGCAACCTCGATCGACTCTAACTTTGTCGCCTACCCACGGCCAGCGTTCT
CAGCAACAAAGCGGACAGATCACGCTCCAAACAGTTTTGTTTCTCAAGGC
CACACGTCATGCAAAAATAAGGAAAATTGAAACACCGAGGTCCGTGGTGG
TGGAGGCTTCGGCCTATTATACTGAAGACGGCCCACGAGCCAGCATCCAG
TCGTTCAAAGTCGTGCGCATCACTGAAAAACTTCCCCACGGATCTTGACC
TTTCGTCGCTTCTTGTTGATCTTCGTAGTAGAGCTTTTCCCTTAGAAACC
TCCCGGCTCGCGCCTTTGATTCTCGCGCACAGGGGTTCAGCACTCCCCTG
GCTCGTCAACGATCGAGCTGCTCTTTGCCATCGCCGAATCTAGTGCGTAC
TTACAACCCGATAGAGCACTGTTGTGCCCTACCAGGGCTTTCTGCGACAG
TCTCCCCTTGCTCTCGCGGGCCGCCACCTCCCGAAGGGCATCAAGTTAGA
GCTCGGAAGAGTCGCGCCTGGTGAATATACCAGGTACCGTATATCTTAAC
CAACCATACTGCCGCCGCGTCTCAACCGACCGACTGAATCACGAAGACGG
CCAGTTGGCTGCATCTCTCGAGGATGAGCCCGGCCCTACACCCGCCAGTC
AGACCCTCCCACACTCATATCCCAAAACCAGGTTTCGGAGGGAGAGGGTA
CGAGGAGACCAAACCAAGGTGTACAAGTGTGTGTGTGTGTGTGTGTATTT
ATTAAATTGCACATAACCACGCAATCCGGCCGTGTCATCCTAGCCATTCT
ATGCCACTCGCATTGATCCTCCCGAGGGGGGATCAATGATACTTATTACG
AAAACCGTGTGTGTGTTTGTTTTTTTTTCTGTGTCATCTTCCCATTTTTT
TATATATTTTTTCAATCACACTTAAAGCCGATGGACCTCTAATTACCATC
CTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCCGGTTCACGCCTTG
CAGTTTGTATCGCGATGCAAGTTCAGCACTCTTACAACTCGTCAACCAAT
GGTTGAATTTTACTTACTCACGTTCCCACGCTTTCCGTTACGAAAGAATG
AACACAAATGCTGCTCAAGCTAAGAATCGAACTCATGACTACCGCACTAG
CAGGTATGCAGGTTACCTACTAGACCACTCGGGCGACATTCATCCTGAAT
AATTATTAAAACAGCAGTTTATTAAAACAGCAGTTTTAAAACAGTACGGT
AGAGTACGATTTCATTGGTGGTGTCGTCTAATAGCATTATACCACAGGTA
GGAGGCACACCTCACCGGCCATACCTCCTTTTGATCATTCACATCATCAC
CTGAATCCATATGCGTGCGAGTTACTCATGGCGCTCATTCCACGCATTGA
TCACTGTCCCTGGTTTGCCATCATGCGTATAATGCTGTACCTCCCTTCCT
TCTGCTCCCCTCTTGTCGCGTGCATCCCAGTTTGAAGCCGCCAAACGCCG
CGAAATGAACGTCCCCGAAGTCCGCATCGCCATTGGGGAGGGGGACCTTA
TGGTTTTCCGCGTAATTATGGCGCTGTACCAACAGATTCTCCTTATCCTC
TTGGGAGACGCTTCACCGGCAGCGCAAGCAAACATGGTGCGCCGCTATGT
TTACGGGGTCCTCGCGACCCTAAAGATGCGTGCAACGCCACGGACCATCG
TAGGGTTCATCATGCCGTTGAAAACCATGGTCGATGCGTATTCCCGCCAA
CAAAGGTGAGCTGGCGGAAGACAAGAAGTTACTTGGTGCTGCACGTAGAT
AAATTATACCGTGGTGGGAATTGCAGCTTGGGCTTTTACCGTTCCAGCCC
TCGGCGCGAGTGGTCTGTCAATAGTAGCAAACCTGCATAGACTACCGTAC
CTGCTATTAATACTTAATACTGCGAAAGAAAGTCGAAGTCGTGAGTTCGA
TTCTTGTGGAAGCAGGATTTTTGTTATTTCTGTTCTTCCGTAACGGAAAG
CGTGAGAACGTGCGTAAGTGAAATTCAACTATTGGTTGACGAGTTGTAAG
AGTGCTGAACTAGCATCGCGATAAAAAATCGCAACTCGTGAACCGGGTAG
AGATGGGAAGACCCTTAGTGACCATAGTCTATAGGCAGAATGAAATGAGG
CCCATCGGCTATAAGTGAGATGAAAACAATATGCCAGGGGTTATGTTTTA
GACTATTAATATAGTACTGGTAGAGATTTATGTACTGTACTGTACCGTCG
GGCACGTGTCTGTCATGTCATGCTTGCGTGTCATGTTTGCGCTTGGTGAC
CTCACATTCACTACTGTAGCAGGCAGCAAGCAGCAAGCGAACCGTTCGCG
TCGCGTTGCGTAAACCTAAATTACAAACGAGTTCGTATTGTTCCTCCTCT
CTGCCTCTTCTCATCTCCTCCTTTCCCCCTCTCTCCTTTCCGGAGCAGGA
ACATGACGGAACGCGCATTGGCGCAACTTCTCAAGACGCTCGAAAAAACC
TGCAAAGCGATGCTCCGCGAACTGCGCAACGGCGAAAAGCAGGTGCGAGT
TCCTTCGCTCGGCTCGCGTCCGCTTCAGTCCCCCAGTGTTGCGTCCCCCA
CCGTAGATTTACCTTCTCTCAGTTCAGACGCTTGGCTTTTATATGGAGTA
CTGTACTCGCCGCCATGGACACTATAGACCCTGTTGTGCAGCTATAGTAG
TAGCTGCTGGCGACGCTTGCTAAATTCAATGTCTCGGGGAGTGTAGGAAC
GCTTACTGTTTGTCGAGTGATAAAACAAAGTGTTGTATCCCACCTCACAC
CCATACACCACGCAGTAACTCTTCTTACCGTCTCGATCCACACAGCTGCC
AGTTAATATCTACCAGGGTATTATTTATTACCAGACATATATTACATTAC
TTCCTCCCTGGTAAACACGAGATCAGGGATACACCGTACCATATGTTATT
AGAGCTAGAACTATAATGATTCATAGCTGTATTAAAATGTGGACATGCAT
ACACTGTAATAATCATAGTCATGTGTTGCGCTCGTGTCCTCCGCCCTATG
CCCAACATCCGTCGTCCATCCCTTGCCGCTCCGTCCAGGGGTTGTGGCCA
ACGGCCACGAAGGTGTTTACAGTGCTACCCGTGCCCCCTCCAACGACCGA
TACCGGAGGGGGGAAAGCCCCCGTAGAAGACGGGGTAGAATTTATACCTC
TACGGAGGCCGGGTACCCAGGTCAACCCACGGGCCTGTCATGTACAATGG
AGCTCCGCTGTCTGTGTCTCCGACTGAGGCGTGTGTGTGTGTGTGTGTGT
GTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1115:89752..94057-

>mRNA_F-serratus_M_contig1115.1074.1 ID=mRNA_F-serratus_M_contig1115.1074.1|Name=mRNA_F-serratus_M_contig1115.1074.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig1115:89752..94057- (Fucus serratus male)
CTACCCCACCAACCAGCAAACTCGCCTGCCCAGCAGCACACTTCTTCGCA
GTTACGTCCTCCTTTGAGGTTTGATCACGATGTTCGAGATGATTTCTATG
GTGCTCATCGCACTGCTCATTCCCGTGATCATCAGCCTCATCAGGGGCCC
GATTGCTGGGTACTTGGACACGATCAACAACTACTTCTTCTACGGACGAA
GCATTTTTCCCAGGCTACCCCACCAACCAGCAAACTCGCCTGCCCAGCAG
CACACTTCTTCGCAGTTACGTCCTCCTTTGAGGTTTGATCACGATGTTCG
AGATGATTTCTATGGTGCTCATCGCACTGCTCATTCCCGTGATCATCAGC
CTCATCAGGGGCCCGATTGCTGGGTACTTGGACACGATCAACAACTACTT
CTTCTACGGACGAAGCATTTTTCCCAGGGGGTTGTGGCCAACGGCCACGA
AGGTGTTTACAGTGCTACCCGTGCCCCCTCCAACGACCGATACCGGAGGG
GGGAAAGCCCCCGTAGAAGACGGGGTAGAATTTATACCTCTACGGAGGCC
GGGTACCCAGGTCAACCCACGGGCCTGTCATGTACAATGGAGCTCCGCTG
TCTGTGTCTCCGACTGAGGCGTGTGTGTGTGTGTGTGTGTGTGTGAGGGT
TGTGGCCAACGGCCACGAAGGTGTTTACAGTGCTACCCGTGCCCCCTCCA
ACGACCGATACCGGAGGGGGGAAAGCCCCCGTAGAAGACGGGGTAGAATT
TATACCTCTACGGAGGCCGGGTACCCAGGTCAACCCACGGGCCTGTCATG
TACAATGGAGCTCCGCTGTCTGTGTCTCCGACTGAGGCGTGTGTGTGTGT
GTGTGTGTGTGTGA
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