mRNA_F-serratus_M_contig1115.1072.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1115.1072.1
Unique NamemRNA_F-serratus_M_contig1115.1072.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1115.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1115contigF-serratus_M_contig1115:39991..40326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.7642088-CDS-F-serratus_M_contig1115:39990..403051622929000.7642088-CDS-F-serratus_M_contig1115:39990..40305Fucus serratus maleCDSF-serratus_M_contig1115 39991..40305 +
1690962663.7142599-CDS-F-serratus_M_contig1115:39990..403051690962663.7142599-CDS-F-serratus_M_contig1115:39990..40305Fucus serratus maleCDSF-serratus_M_contig1115 39991..40305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.7740078-UTR-F-serratus_M_contig1115:40305..403261622929000.7740078-UTR-F-serratus_M_contig1115:40305..40326Fucus serratus maleUTRF-serratus_M_contig1115 40306..40326 +
1690962663.7261696-UTR-F-serratus_M_contig1115:40305..403261690962663.7261696-UTR-F-serratus_M_contig1115:40305..40326Fucus serratus maleUTRF-serratus_M_contig1115 40306..40326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1115.1072.1prot_F-serratus_M_contig1115.1072.1Fucus serratus malepolypeptideF-serratus_M_contig1115 39991..40305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1115.1072.1

>prot_F-serratus_M_contig1115.1072.1 ID=prot_F-serratus_M_contig1115.1072.1|Name=mRNA_F-serratus_M_contig1115.1072.1|organism=Fucus serratus male|type=polypeptide|length=105bp
LHEVVVIQASVRCAIATARYRRTNFAATYIQTWWRGETVVARYREELHDD
YNSIFYCSYRRVLSVVNVRIVPRVLFHFPVIALAFCIDPTKTSYSLLGWS
SWSN*
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mRNA from alignment at F-serratus_M_contig1115:39991..40326+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1115.1072.1 ID=mRNA_F-serratus_M_contig1115.1072.1|Name=mRNA_F-serratus_M_contig1115.1072.1|organism=Fucus serratus male|type=mRNA|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig1115:39991..40326+ (Fucus serratus male)
CTTCATGAGGTGGTAGTCATTCAGGCGAGTGTGCGCTGTGCTATAGCTAC
TGCTCGTTACCGTCGGACTAACTTCGCGGCAACATACATCCAGACCTGGT
GGCGGGGTGAAACCGTTGTAGCGCGCTACCGCGAGGAATTACATGATGAC
TATAACTCCATCTTTTACTGCAGCTACCGTCGAGTGCTGTCTGTTGTTAA
CGTTCGTATTGTACCTCGTGTTTTGTTTCATTTTCCCGTCATAGCCTTGG
CATTCTGTATCGATCCCACGAAAACAAGTTACTCCTTGCTGGGCTGGTCA
AGCTGGTCCAATTAGGAACACGCAGCATTTTTGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1115:39991..40326+

>mRNA_F-serratus_M_contig1115.1072.1 ID=mRNA_F-serratus_M_contig1115.1072.1|Name=mRNA_F-serratus_M_contig1115.1072.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig1115:39991..40326+ (Fucus serratus male)
CTTCATGAGGTGGTAGTCATTCAGGCGAGTGTGCGCTGTGCTATAGCTAC
TGCTCGTTACCGTCGGACTAACTTCGCGGCAACATACATCCAGACCTGGT
GGCGGGGTGAAACCGTTGTAGCGCGCTACCGCGAGGAATTACATGATGAC
TATAACTCCATCTTTTACTGCAGCTACCGTCGAGTGCTGTCTGTTGTTAA
CGTTCGTATTGTACCTCGTGTTTTGTTTCATTTTCCCGTCATAGCCTTGG
CATTCTGTATCGATCCCACGAAAACAAGTTACTCCTTGCTGGGCTGGTCA
AGCTGGTCCAATTAGCTTCATGAGGTGGTAGTCATTCAGGCGAGTGTGCG
CTGTGCTATAGCTACTGCTCGTTACCGTCGGACTAACTTCGCGGCAACAT
ACATCCAGACCTGGTGGCGGGGTGAAACCGTTGTAGCGCGCTACCGCGAG
GAATTACATGATGACTATAACTCCATCTTTTACTGCAGCTACCGTCGAGT
GCTGTCTGTTGTTAACGTTCGTATTGTACCTCGTGTTTTGTTTCATTTTC
CCGTCATAGCCTTGGCATTCTGTATCGATCCCACGAAAACAAGTTACTCC
TTGCTGGGCTGGTCAAGCTGGTCCAATTAG
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