mRNA_F-serratus_M_contig1115.1071.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1115.1071.1
Unique NamemRNA_F-serratus_M_contig1115.1071.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: D8LRQ8_ECTSI (Imp1 homolog, Inner Membrane Peptidase complex subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.340e-15
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYK 111
            VP GHVWLEGDN +NS+DSR YGPIPLAM+RGRVF+K
Sbjct:   85 VPEGHVWLEGDNPSNSSDSRTYGPIPLAMVRGRVFFK 121
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: A0A433PLF7_9FUNG (Peptidase S24/S26A/S26B/S26C n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PLF7_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 5.710e-15
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VPPGHVWL GDN +NSTDSR YGP+PLA+++GRVF +V
Sbjct:   31 VPPGHVWLGGDNMSNSTDSRLYGPVPLALVKGRVFARV 68
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: L1IXV0_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IXV0_GUITC)

HSP 1 Score: 72.4 bits (176), Expect = 6.260e-15
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VP GHVWL+GDN  NSTDSR YGP+PLA+IRG+VFYK+
Sbjct:  102 VPDGHVWLQGDNLPNSTDSRHYGPVPLALIRGKVFYKI 139
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: T0NNN8_CAMFR (Peptidase_S26 domain-containing protein n=1 Tax=Camelus ferus TaxID=419612 RepID=T0NNN8_CAMFR)

HSP 1 Score: 70.5 bits (171), Expect = 7.020e-15
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKVT 117
            VP GHVWLEGDN  NSTDSR YGP+P  +IRGR+F+K T
Sbjct:   23 VPTGHVWLEGDNLQNSTDSRYYGPVPYGLIRGRIFFKTT 61
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: A0A0D6ERA5_SPOSA (Mitochondrial inner membrane protease subunit n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ERA5_SPOSA)

HSP 1 Score: 71.2 bits (173), Expect = 9.210e-15
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VPPGHVWL GDNA+NSTDSR YGP+P+AM+RGRV  +V
Sbjct:   72 VPPGHVWLAGDNASNSTDSRDYGPVPMAMVRGRVVARV 109
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: A0A4P9WJG7_9FUNG (Peptidase S24/S26A/S26B/S26C n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WJG7_9FUNG)

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-14
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VPPGHVWL+GDN +NSTDSRAYGP+P+ ++RGRV  KV
Sbjct:   68 VPPGHVWLQGDNFSNSTDSRAYGPVPMGLLRGRVLCKV 105
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: A0A433PWB3_9FUNG (IMP1 inner mitochondrial membrane peptidase-like protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PWB3_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.720e-14
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VPPGHVWL GDN +NSTDSR YGP+PLA+++GRVF +V
Sbjct:   75 VPPGHVWLGGDNMSNSTDSRLYGPVPLALVKGRVFARV 112
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: T1I1N5_RHOPR (Uncharacterized protein n=4 Tax=Triatominae TaxID=70999 RepID=T1I1N5_RHOPR)

HSP 1 Score: 70.9 bits (172), Expect = 1.800e-14
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VP GH+WLEGDNATNSTDSR YGP+PLA++RGRV  ++
Sbjct:  101 VPRGHIWLEGDNATNSTDSREYGPVPLALVRGRVILRL 138
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: A0A2K6S6V1_SAIBB (Peptidase_S26 domain-containing protein n=32 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K6S6V1_SAIBB)

HSP 1 Score: 69.3 bits (168), Expect = 2.170e-14
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VP GHVWLEGDN  NSTDSR YGPIP  +IRGR+F+K+
Sbjct:   36 VPMGHVWLEGDNLQNSTDSRYYGPIPYGLIRGRIFFKI 73
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BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Match: A0A7S0N2K5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N2K5_9CRYP)

HSP 1 Score: 71.6 bits (174), Expect = 2.270e-14
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKV 114
            VP GHVWL+GDN  NSTDSR+YG +P+A+IRGRVFYKV
Sbjct:  143 VPAGHVWLQGDNLANSTDSRSYGAVPIALIRGRVFYKV 180
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1115.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ8_ECTSI5.340e-1581.08Imp1 homolog, Inner Membrane Peptidase complex sub... [more]
A0A433PLF7_9FUNG5.710e-1573.68Peptidase S24/S26A/S26B/S26C n=1 Tax=Endogone sp. ... [more]
L1IXV0_GUITC6.260e-1576.32Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
T0NNN8_CAMFR7.020e-1571.79Peptidase_S26 domain-containing protein n=1 Tax=Ca... [more]
A0A0D6ERA5_SPOSA9.210e-1576.32Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A4P9WJG7_9FUNG1.300e-1473.68Peptidase S24/S26A/S26B/S26C n=1 Tax=Blyttiomyces ... [more]
A0A433PWB3_9FUNG1.720e-1473.68IMP1 inner mitochondrial membrane peptidase-like p... [more]
T1I1N5_RHOPR1.800e-1473.68Uncharacterized protein n=4 Tax=Triatominae TaxID=... [more]
A0A2K6S6V1_SAIBB2.170e-1473.68Peptidase_S26 domain-containing protein n=32 Tax=B... [more]
A0A7S0N2K5_9CRYP2.270e-1476.32Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1115contigF-serratus_M_contig1115:4984..5103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog2880.D8LRQ8
Preferred nameIMMP1L
KEGG koko:K05850,ko:K09647
KEGG TC3.A.3.2
KEGG Pathwayko03060,ko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map03060,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006626,GO:0006627,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034982,GO:0042720,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0065003,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG0681@1,KOG0171@2759
Ec32 ortholog descriptionImp1 homolog, Inner Membrane Peptidase complex subunit 1
Ec32 orthologEc-08_002060.1
EC3.6.3.8
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.8074472-CDS-F-serratus_M_contig1115:4983..51031622929000.8074472-CDS-F-serratus_M_contig1115:4983..5103Fucus serratus maleCDSF-serratus_M_contig1115 4984..5103 -
1690962663.7394884-CDS-F-serratus_M_contig1115:4983..51031690962663.7394884-CDS-F-serratus_M_contig1115:4983..5103Fucus serratus maleCDSF-serratus_M_contig1115 4984..5103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1115.1071.1prot_F-serratus_M_contig1115.1071.1Fucus serratus malepolypeptideF-serratus_M_contig1115 4984..5103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1115.1071.1

>prot_F-serratus_M_contig1115.1071.1 ID=prot_F-serratus_M_contig1115.1071.1|Name=mRNA_F-serratus_M_contig1115.1071.1|organism=Fucus serratus male|type=polypeptide|length=40bp
VPPGHVWLEGDNATNSTDSRAYGPIPLAMIRGRVFYKVT*
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mRNA from alignment at F-serratus_M_contig1115:4984..5103-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1115.1071.1 ID=mRNA_F-serratus_M_contig1115.1071.1|Name=mRNA_F-serratus_M_contig1115.1071.1|organism=Fucus serratus male|type=mRNA|length=120bp|location=Sequence derived from alignment at F-serratus_M_contig1115:4984..5103- (Fucus serratus male)
GTGCCTCCGGGGCATGTTTGGCTCGAGGGAGACAACGCAACGAATTCCAC
TGATTCGCGCGCTTATGGGCCCATACCGTTGGCCATGATCCGTGGCAGGG
TTTTCTACAAGGTAACGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1115:4984..5103-

>mRNA_F-serratus_M_contig1115.1071.1 ID=mRNA_F-serratus_M_contig1115.1071.1|Name=mRNA_F-serratus_M_contig1115.1071.1|organism=Fucus serratus male|type=CDS|length=240bp|location=Sequence derived from alignment at F-serratus_M_contig1115:4984..5103- (Fucus serratus male)
GTGCCTCCGGGGCATGTTTGGCTCGAGGGAGACAACGCAACGAATTCCAC
TGATTCGCGCGCTTATGGGCCCATACCGTTGGCCATGATCCGTGGCAGGG
TTTTCTACAAGGTAACGTAAGTGCCTCCGGGGCATGTTTGGCTCGAGGGA
GACAACGCAACGAATTCCACTGATTCGCGCGCTTATGGGCCCATACCGTT
GGCCATGATCCGTGGCAGGGTTTTCTACAAGGTAACGTAA
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