mRNA_F-serratus_M_contig1114.1070.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1114.1070.1
Unique NamemRNA_F-serratus_M_contig1114.1070.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 7.400e-47
Identity = 87/174 (50.00%), Postives = 107/174 (61.49%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVVNPERDSSCGLSISCIDPDSGCADPR--LLQYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTP-DCDSER--------GNGFFCLDPNSGCA---DPSLLKYTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
             GDG C+   NNNE CG+DGGDCCECTCV   + D SC  + +CIDP + C D     +  +   G   S+G+G C   NNNE CG+DGGDCCECTC P D D           GNGF C+DPN+ C    D +L    NC  D + +G+G+C+  NNNEAC +DGGDCCECTC
Sbjct:   61 FGDGWCDQ-ENNNEICGYDGGDCCECTCVNAWDDDYSCAANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENC--DSVAVGNGFCDMDNNNEACAYDGGDCCECTC 231          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.380e-40
Identity = 88/190 (46.32%), Postives = 106/190 (55.79%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVV------NPERD------SSCGLSISCIDPDSGCA--DPRLLQYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCT-PDCDSER------------GNGFFCLDPNSGCADPSLLKY---TNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
            +GDG C+   NNNE CG+DGGDCCECTCV       +P  D      SS G   +CIDP + C   D      +   G    +GDG C+  NNNE CG+DGGDCCECTC  P  D +             G GF C+DP++ C D   +      +C  D + IGDGYCN  NNNEAC +DGGDCCECTC
Sbjct:   59 LGDGYCDQ-DNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENCGYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESC--DTVSIGDGYCNMDNNNEACAYDGGDCCECTC 245          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.380e-39
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 VGSIGDGSCNSGTNNNEACGWDGGDCCECTCVVNPE--RDSSCGLSISCIDPDSGCADPRLLQ--YINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPDCDSERG-NGFFCLDPNSGCADPSLLK---YTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
            V  +G+G CN   NN E C +D GDCC+CTC +  +   D SC +  +C+DP++ C D  + +  + +C     + GDG C   NNNE CG+DGGDCCECTC  D  +E G   F C+DP + C D   +      NC   + Y+GDGYC+T NNNE CD+DGGDCCECTC
Sbjct:  142 VAGLGNGYCNE-ANNIEECDYDAGDCCQCTCGIESDDLSDFSC-VDFACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM--IEYLGDGYCDTYNNNEICDYDGGDCCECTC 304          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.930e-38
Identity = 74/158 (46.84%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   40 NNNEACGWDGGDCCECTCVVNPER--DSSCGLSISCIDPDSGCADPRLLQ--YINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPDCDSERG-NGFFCLDPNSGCADPSLLK---YTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
            NN E C +D GDCC+CTC +  +   D SC +  +C+DP++ C D  + +  + +C     + GDG C   NNNE CG+DGGDCCECTC  D  +E G   F C+DP + C D   +      NC   + Y+GDGYC+T NN E CD+DGGDCCECTC
Sbjct:    5 NNIEECDYDAGDCCQCTCGIESDDLPDFSC-VDFACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM--MEYLGDGYCDTYNNIEICDYDGGDCCECTC 155          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.140e-37
Identity = 85/178 (47.75%), Postives = 101/178 (56.74%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVVNPERD------SSCGLSISCIDPDSGCADPRLLQYI---NCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPDCD------SERGNGFFCLDPNSGCADP---SLLKYTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
             GDG C    NNN  CG+DGGDCCECTC  NP  D      S  G   +CIDPD+ C D   +      NC    S +G+G C   NNNE CG+D GDCCECTC    D      S  G+GF C+DP + C D    ++    NC G V  +GDG+C+  NNNE C +DGGDCCECTC
Sbjct:   29 FGDGYCQL-QNNNAECGYDGGDCCECTCQ-NPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCV--TSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.830e-36
Identity = 79/176 (44.89%), Postives = 100/176 (56.82%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVVNPERD------SSCGLSISCIDPDSGC-ADPRLLQYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPDCDSER--------GNGFFCLDPNSGCA-DPSLLKYTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
             GDG C    NNN  CG+DGGDCCECTC  NP+        S  G   +C+DPD+ C A+  +    +       +GDG C   NNNE CG+DGGDCCECTC    D +         G GF C+DP++ C  D  +    + + D + +GDGYC+  NNN AC +DGGDCCECTC
Sbjct:   36 YGDGYCTP-PNNNAECGYDGGDCCECTCQ-NPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTC 209          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.630e-35
Identity = 79/181 (43.65%), Postives = 103/181 (56.91%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVVNPERDSSCG--LSISCIDPDSGCADPRLL---QYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPD----------CDSERGNGFFCLDPNSGCADPSLLKYTNCTGDVI------YIGDGYCNTRNNNEACDWDGGDCCECTC 489
            IG+G CN G NN E CG+DGGDCCECTC    + + +CG     +CIDPD+ C D   +      NC    S IG+G C +  NNE C +DGGDCCECTC P           C +    GF C+DP++ C D  ++     T +++       IG+GYC+  NN+  C +DGGDCCECTC
Sbjct:   98 IGNGRCNMG-NNIEECGFDGGDCCECTCE---DGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENCY-DPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIV-----TAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTC 268          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 5.360e-35
Identity = 75/168 (44.64%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    4 GSIGDGSCNSGTNNNEACGWDGGDCCECTCVVNPERDSSCGLSISCIDPDSGCADPR--LLQYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPDCDSERGNGFF-CLDPNSGCADPSLLK---YTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
            G IGDG C+   NNNE C +DGGDCCECTC  + + D  C  + +C+DP++ C D     +  I     ++ IGDG C    N   C +DGGDCC CTC    D + G  +F C+DP + C D   +    + NC   V  IG+G+C+  NN EAC +DGGDCCECTC
Sbjct:   61 GGIGDGWCDE-DNNNELCAYDGGDCCECTCEGSEDDDWHC-RNFACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDITVDMFENCEYPVD-IGNGWCDEANNIEACGYDGGDCCECTC 225          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: D8LEX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.740e-35
Identity = 82/171 (47.95%), Postives = 96/171 (56.14%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVVNP--ERDSSCGLSISCIDPDSGCADPRLLQYINCTGTASSI----GDGRCYTGNNNEACGWDGGDCCECTCTPDCDSERG---NGFFCLDPNSGCADPSLL--KYTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
             GDG C+   NNNE CG+DGGDCCECTCVV+     +SSC    +CIDP + CAD      I      S I    GDG C T NN E CG+D GDCCECT             + F C+DP + C D S+    + NC  D   +GDGYC   NNNE CD+D GDCCE TC
Sbjct:    8 FGDGFCDD-YNNNEQCGYDGGDCCECTCVVSTLWSTESSC-TEFACIDPRAPCADD---DDITADAVESCIIDYLGDGICDTSNNIETCGYDSGDCCECTXXXXXXXXXXXSCSDFACVDPMASCFDESITVDMFENC--DAELLGDGYCQESNNNEICDYDFGDCCESTC 171          
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.550e-34
Identity = 80/177 (45.20%), Postives = 99/177 (55.93%), Query Frame = 1
Query:   10 IGDGSCNSGTNNNEACGWDGGDCCECTCVV----NPERDSSCGLS--ISCIDPDSGCAD--------PRLLQYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTPDCDSERGNGFFCLDPNSGCADP---SLLKYTNCTGDVIYIGDGYCNTRNNNEACDWDGGDCCECTC 489
            IGDG+C+   NN E C +DGGDCC CTC V      +  S CG S   +CIDPD+ C +        P +++   C G    + DG C   NNNE CG+DGGDCC CTC  D       GF C+DP++ CAD    ++    NC   V  IGDG C+  NN E C +DGGDCC CTC
Sbjct:  104 IGDGNCDK-DNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKET-CGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSAECADDDDVTVDTVENCG--VRSIGDGQCDLDNNREECHYDGGDCCSCTC 276          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1114.1070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI7.400e-4750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE1.380e-4046.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK5_9PHAE5.380e-3946.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI1.930e-3846.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI5.140e-3747.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI3.830e-3644.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI1.630e-3543.65Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI5.360e-3544.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEX5_ECTSI6.740e-3547.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE3.550e-3445.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1114contigF-serratus_M_contig1114:110844..111332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.6743972-CDS-F-serratus_M_contig1114:110843..1113321622929000.6743972-CDS-F-serratus_M_contig1114:110843..111332Fucus serratus maleCDSF-serratus_M_contig1114 110844..111332 +
1690962663.6815844-CDS-F-serratus_M_contig1114:110843..1113321690962663.6815844-CDS-F-serratus_M_contig1114:110843..111332Fucus serratus maleCDSF-serratus_M_contig1114 110844..111332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1114.1070.1prot_F-serratus_M_contig1114.1070.1Fucus serratus malepolypeptideF-serratus_M_contig1114 110844..111332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1114.1070.1

>prot_F-serratus_M_contig1114.1070.1 ID=prot_F-serratus_M_contig1114.1070.1|Name=mRNA_F-serratus_M_contig1114.1070.1|organism=Fucus serratus male|type=polypeptide|length=163bp
VGSIGDGSCNSGTNNNEACGWDGGDCCECTCVVNPERDSSCGLSISCIDP
DSGCADPRLLQYINCTGTASSIGDGRCYTGNNNEACGWDGGDCCECTCTP
DCDSERGNGFFCLDPNSGCADPSLLKYTNCTGDVIYIGDGYCNTRNNNEA
CDWDGGDCCECTC
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mRNA from alignment at F-serratus_M_contig1114:110844..111332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1114.1070.1 ID=mRNA_F-serratus_M_contig1114.1070.1|Name=mRNA_F-serratus_M_contig1114.1070.1|organism=Fucus serratus male|type=mRNA|length=489bp|location=Sequence derived from alignment at F-serratus_M_contig1114:110844..111332+ (Fucus serratus male)
GTGGGCTCAATAGGCGACGGAAGCTGTAACTCCGGTACAAACAACAATGA GGCTTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAA ATCCCGAAAGAGACTCCAGCTGTGGGCTAAGCATCTCATGTATTGACCCA GATTCTGGATGCGCTGACCCAAGGCTCCTCCAGTATATCAACTGCACTGG TACTGCCTCATCCATAGGTGATGGTCGCTGCTACACTGGCAATAACAATG AGGCTTGTGGATGGGACGGAGGGGACTGCTGTGAGTGCACATGCACCCCT GACTGTGACAGTGAAAGAGGAAATGGTTTCTTTTGTTTGGACCCCAACTC TGGATGCGCTGACCCAAGTCTCCTCAAGTATACCAACTGCACTGGTGATG TCATCTACATTGGCGACGGATATTGCAACACGCGCAACAATAACGAGGCT TGTGACTGGGACGGGGGTGACTGCTGTGAGTGCACGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1114:110844..111332+

>mRNA_F-serratus_M_contig1114.1070.1 ID=mRNA_F-serratus_M_contig1114.1070.1|Name=mRNA_F-serratus_M_contig1114.1070.1|organism=Fucus serratus male|type=CDS|length=978bp|location=Sequence derived from alignment at F-serratus_M_contig1114:110844..111332+ (Fucus serratus male)
GTGGGCTCAATAGGCGACGGAAGCTGTAACTCCGGTACAAACAACAATGA
GGCTTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAA
ATCCCGAAAGAGACTCCAGCTGTGGGCTAAGCATCTCATGTATTGACCCA
GATTCTGGATGCGCTGACCCAAGGCTCCTCCAGTATATCAACTGCACTGG
TACTGCCTCATCCATAGGTGATGGTCGCTGCTACACTGGCAATAACAATG
AGGCTTGTGGATGGGACGGAGGGGACTGCTGTGAGTGCACATGCACCCCT
GACTGTGACAGTGAAAGAGGAAATGGTTTCTTTTGTTTGGACCCCAACTC
TGGATGCGCTGACCCAAGTCTCCTCAAGTATACCAACTGCACTGGTGATG
TCATCTACATTGGCGACGGATATTGCAACACGCGCAACAATAACGAGGCT
TGTGACTGGGACGGGGGTGACTGCTGTGAGTGCACGTGCGTGGGCTCAAT
AGGCGACGGAAGCTGTAACTCCGGTACAAACAACAATGAGGCTTGTGGGT
GGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAAATCCCGAAAGA
GACTCCAGCTGTGGGCTAAGCATCTCATGTATTGACCCAGATTCTGGATG
CGCTGACCCAAGGCTCCTCCAGTATATCAACTGCACTGGTACTGCCTCAT
CCATAGGTGATGGTCGCTGCTACACTGGCAATAACAATGAGGCTTGTGGA
TGGGACGGAGGGGACTGCTGTGAGTGCACATGCACCCCTGACTGTGACAG
TGAAAGAGGAAATGGTTTCTTTTGTTTGGACCCCAACTCTGGATGCGCTG
ACCCAAGTCTCCTCAAGTATACCAACTGCACTGGTGATGTCATCTACATT
GGCGACGGATATTGCAACACGCGCAACAATAACGAGGCTTGTGACTGGGA
CGGGGGTGACTGCTGTGAGTGCACGTGC
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