mRNA_F-serratus_M_contig1113.1069.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1113.1069.1
Unique NamemRNA_F-serratus_M_contig1113.1069.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1113.1069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1113contigF-serratus_M_contig1113:275416..275753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.7441893-CDS-F-serratus_M_contig1113:275415..2757451622928998.7441893-CDS-F-serratus_M_contig1113:275415..275745Fucus serratus maleCDSF-serratus_M_contig1113 275416..275745 +
1690962662.6876473-CDS-F-serratus_M_contig1113:275415..2757451690962662.6876473-CDS-F-serratus_M_contig1113:275415..275745Fucus serratus maleCDSF-serratus_M_contig1113 275416..275745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.768373-UTR-F-serratus_M_contig1113:275745..2757531622928998.768373-UTR-F-serratus_M_contig1113:275745..275753Fucus serratus maleUTRF-serratus_M_contig1113 275746..275753 +
1690962662.6990793-UTR-F-serratus_M_contig1113:275745..2757531690962662.6990793-UTR-F-serratus_M_contig1113:275745..275753Fucus serratus maleUTRF-serratus_M_contig1113 275746..275753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1113.1069.1prot_F-serratus_M_contig1113.1069.1Fucus serratus malepolypeptideF-serratus_M_contig1113 275416..275745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1113.1069.1

>prot_F-serratus_M_contig1113.1069.1 ID=prot_F-serratus_M_contig1113.1069.1|Name=mRNA_F-serratus_M_contig1113.1069.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MGDRVIELSLGCKLVCAIYSADDTELALLCFQQGWAERRGTVPLTVPVPW
IVHCIIYGHRCFEVLQAIKSVLIHSWVIFHYDTVYSYLNLQSSAVKRLAG
HSNNRYCNF*
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mRNA from alignment at F-serratus_M_contig1113:275416..275753+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1113.1069.1 ID=mRNA_F-serratus_M_contig1113.1069.1|Name=mRNA_F-serratus_M_contig1113.1069.1|organism=Fucus serratus male|type=mRNA|length=338bp|location=Sequence derived from alignment at F-serratus_M_contig1113:275416..275753+ (Fucus serratus male)
ATGGGTGATAGGGTCATTGAACTTTCCTTGGGATGCAAACTTGTCTGCGC
TATATATAGCGCAGACGATACAGAACTCGCGTTGCTTTGTTTTCAGCAGG
GATGGGCAGAGCGGAGGGGCACTGTACCCCTAACTGTACCGGTACCTTGG
ATCGTACACTGTATCATATATGGCCACCGTTGTTTCGAGGTCCTGCAGGC
AATTAAATCAGTACTTATACACAGTTGGGTAATCTTTCACTACGATACTG
TATACAGTTATCTGAACCTTCAATCCTCAGCCGTCAAGAGGTTGGCCGGG
CACAGCAACAACAGGTACTGTAACTTTTGATGGTTTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1113:275416..275753+

>mRNA_F-serratus_M_contig1113.1069.1 ID=mRNA_F-serratus_M_contig1113.1069.1|Name=mRNA_F-serratus_M_contig1113.1069.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1113:275416..275753+ (Fucus serratus male)
ATGGGTGATAGGGTCATTGAACTTTCCTTGGGATGCAAACTTGTCTGCGC
TATATATAGCGCAGACGATACAGAACTCGCGTTGCTTTGTTTTCAGCAGG
GATGGGCAGAGCGGAGGGGCACTGTACCCCTAACTGTACCGGTACCTTGG
ATCGTACACTGTATCATATATGGCCACCGTTGTTTCGAGGTCCTGCAGGC
AATTAAATCAGTACTTATACACAGTTGGGTAATCTTTCACTACGATACTG
TATACAGTTATCTGAACCTTCAATCCTCAGCCGTCAAGAGGTTGGCCGGG
CACAGCAACAACAGGTACTGTAACTTTTGAATGGGTGATAGGGTCATTGA
ACTTTCCTTGGGATGCAAACTTGTCTGCGCTATATATAGCGCAGACGATA
CAGAACTCGCGTTGCTTTGTTTTCAGCAGGGATGGGCAGAGCGGAGGGGC
ACTGTACCCCTAACTGTACCGGTACCTTGGATCGTACACTGTATCATATA
TGGCCACCGTTGTTTCGAGGTCCTGCAGGCAATTAAATCAGTACTTATAC
ACAGTTGGGTAATCTTTCACTACGATACTGTATACAGTTATCTGAACCTT
CAATCCTCAGCCGTCAAGAGGTTGGCCGGGCACAGCAACAACAGGTACTG
TAACTTTTGA
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