mRNA_F-serratus_M_contig1111.1061.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1111.1061.1
Unique NamemRNA_F-serratus_M_contig1111.1061.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.740e-32
Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   28 LIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGA 456
            ++  LL GS  G L  GD++     +K +   V   W+ + Q+K     D +L N R G+SG+K +DI   KE LQ++ LKNRTT R++A  LG+ + TL +NL +LGLRS SRFLKP+LS++ K +R+ WALRWVR   G A
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDA 143          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.690e-23
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSE 393
            N +   +  +I HLL+GS  G L  G  + AAEKF C       +WRR++ Q    V    L N R G+SGRK + IE+ +E+L+++PL +RTTQR +A  L +   TL  NLK LGLR+ S  +KP L++
Sbjct:   15 NFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLTD 145          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: UPI0019D52509 (uncharacterized protein LOC120642743 n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D52509)

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-16
Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1
Query:   16 MRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCF 507
            +R ++ + LL  S  GKLG+ D     ++F      V  +W + ++Q   ++  +N+ N + G SGRK I I+   EKL+++PLKNR T  +VA++LG+++  +++ L+   LR  S  +KP L+   K+ R+ W +  +  G      F  + + V +DEK F
Sbjct:  188 VRQQVYQALLMRSKNGKLGKNDTTIVGQQFGVKIRTVQRIWEQGKEQLAQNI-PVNVHNRKRGRSGRKAIPIDL--EKLRDIPLKNRMTIEDVARELGVNKSRIQSYLRKGQLRRHSSSIKPYLTSANKETRLKWCIDMIDQGLLDDPKFKDLFDFVFIDEKWF 348          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI)

HSP 1 Score: 80.1 bits (196), Expect = 9.610e-15
Identity = 54/171 (31.58%), Postives = 92/171 (53.80%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARA--FDAMDNVVMVDEKCF 507
            NL  + R  + E LL  S  G L +G +   A  F  S   +  +W++ +    + ++ +N+ +   G+ GRK+I I+  K  + E+PL+ RT  R++AK L +S+ T+   +K   +R+ S  +KP L++E KK R+++ L  +   + G     FD M N V +DEK F
Sbjct:   17 NLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKILIDPRK--VSEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWF 184          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.350e-14
Identity = 42/90 (46.67%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  133 VWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGK 402
            +W R+E Q+   V    + N R G+SGRK I I++ +E+L+++PL +RTTQR +A  LG++  TL +NLK LGLR+ S+ LKP+L+ +GK
Sbjct:   20 LWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAHSKALKPLLTGDGK 109          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A811MKY6_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MKY6_9POAL)

HSP 1 Score: 80.1 bits (196), Expect = 2.200e-14
Identity = 55/170 (32.35%), Postives = 92/170 (54.12%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGH-GGARAFDAMDNVVMVDEKCF 507
            NL E  R ++   LL  S   +L R      A+ F+ SRY+V  +W+R +Q +   +  +++R+ +   SGRK++ I+  +  +  VPL  R+T R++A+ +G+ + TL    K   LR  S  LKP+L+E+ K+ R+ W L  +          F AM N++ +DEK F
Sbjct:  191 NLTETERQQIYAALLERSNRRRLKRKATTIVAQMFQVSRYKVQRIWQRAKQCRAQGI-PVDVRSRKPKRSGRKKLQIDLSE--VLSVPLHRRSTIRSLAEAIGVKKSTLHRWFKKGLLRRHSSTLKPLLTEQNKRDRLQWCLSMLDPRTLPHEPKFRAMQNIIHMDEKWF 357          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: UPI0007EFDEEB (uncharacterized protein LOC108194372 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFDEEB)

HSP 1 Score: 77.4 bits (189), Expect = 1.800e-13
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 1
Query:    4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWV-RDGHGGARAFDAMDNVVMVDEKCF 507
            L  + R+ +   LL  S  GKL +   ++ A  F  S   V  VW+R ++   + V D++ +  R  + GRKRI I+   +  + +PL+ R T R+ A  L +S   L  NLK   +R  S  +KP LSEE KK R+ + L  + ++       F  M NV+ +DEK F
Sbjct:  177 LSNEQRNAIYLALLRRSVNGKLKKNTSREVATLFSVSMRTVQRVWKRSKENMKNGVTDVSHK--RTKNCGRKRIQIDL--DHFRSIPLQERKTIRDAANALKVSTSVLSRNLKSGDIRRHSNAIKPFLSEENKKGRLQFCLDMLDKESLPHDPKFHDMQNVIHIDEKWF 341          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6A4ZBD2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZBD2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.100e-13
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 1
Query:   19 RHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDI-EKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLG-LRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCF 507
            R    E LL  ST G+L  G +++ A  FKC    +  VW+R     +D     ++ +   G+SGRK+  + + ++  ++ VP   R T R++A   GL + ++  +++    L+S + ++KP+L+E+  K R+D+A  +VR    G  AF  M+  V VDEK F
Sbjct:   17 RRAAYELLLQSSTNGRLKYGALKEVATYFKCHWKTISRVWKRGRLSLSDGSPHADVDSKLKGNSGRKKSRLADDFEGAIKAVPQHQRQTLRSLAAHCGLPKTSIVRHMQETKRLKSRASYVKPMLTEDNTKARLDFAKSFVRLLPSGNHAFVDMNEYVHVDEKWF 181          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6A4ZER9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZER9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.170e-12
Identity = 56/173 (32.37%), Postives = 86/173 (49.71%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWR--RFEQQKTDDVMDINLRNNRGGHSGRKRI-DIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLG-LRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCF 507
            NL    R  + E LL  S GGKL  G IQD A  + C    +  +W+  R  Q  +  + D+  +    G+ GRK+    E+ K  +Q VP   R T R +A    + + TL  ++K    L++   ++KP+L+ E  + R+D+A  ++R    G   F  M +VV VDEK F
Sbjct:   21 NLKPTERRAVYEQLLERSIGGKLPYGAIQDVARWYYCHSRTIARIWKQGRLSQSLSHGLADVATKMT--GNCGRKKTRTTEEIKAAVQSVPHYQRQTLRALAANSQIPKTTLIRHMKEQNSLKARFSYVKPMLTAENTRTRLDFARSFLRLLSDGTTVFSIMHDVVHVDEKWF 191          
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-11
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:    1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGAR-AFDAMDNVVMVDEKCF 507
            N    ++  + E LL     GKL +G I   AE F  S   V  +W   +   T      NL        GRK+I +    E ++++P + RT  R++AK L +S+ +L   +K   LR  S  +KP LS + KK R+ + L  + +G   ++ +FD M + + +DEK F
Sbjct:   95 NFTTALKRAIYEMLLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKIQVNL--EDIKDIPFRRRTNIRSLAKALDVSKSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWF 262          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD91_9PHAE4.740e-3245.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9I0_9PHAE5.690e-2341.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0019D525091.500e-1631.71uncharacterized protein LOC120642743 n=2 Tax=Panic... [more]
A0A1R3HQ96_9ROSI9.610e-1531.58Transposase, Tc1-like protein n=1 Tax=Corchorus ol... [more]
A0A6H5KBK8_9PHAE1.350e-1446.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A811MKY6_9POAL2.200e-1432.35Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI0007EFDEEB1.800e-1333.14uncharacterized protein LOC108194372 n=1 Tax=Daucu... [more]
A0A6A4ZBD2_9STRA4.100e-1331.52Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A6A4ZER9_9STRA1.170e-1232.37Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6P6TEQ3_COFAR1.290e-1130.59uncharacterized protein LOC113700698 n=2 Tax=Coffe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1111contigF-serratus_M_contig1111:271010..271516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog4792.ETI53387
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QGXT@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size507
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.4447215-CDS-F-serratus_M_contig1111:271009..2715011622928998.4447215-CDS-F-serratus_M_contig1111:271009..271501Fucus serratus maleCDSF-serratus_M_contig1111 271010..271501 -
1690962662.5863326-CDS-F-serratus_M_contig1111:271009..2715011690962662.5863326-CDS-F-serratus_M_contig1111:271009..271501Fucus serratus maleCDSF-serratus_M_contig1111 271010..271501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.4963236-UTR-F-serratus_M_contig1111:271501..2715161622928998.4963236-UTR-F-serratus_M_contig1111:271501..271516Fucus serratus maleUTRF-serratus_M_contig1111 271502..271516 -
1690962662.6048539-UTR-F-serratus_M_contig1111:271501..2715161690962662.6048539-UTR-F-serratus_M_contig1111:271501..271516Fucus serratus maleUTRF-serratus_M_contig1111 271502..271516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1111.1061.1prot_F-serratus_M_contig1111.1061.1Fucus serratus malepolypeptideF-serratus_M_contig1111 271010..271501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1111.1061.1

>prot_F-serratus_M_contig1111.1061.1 ID=prot_F-serratus_M_contig1111.1061.1|Name=mRNA_F-serratus_M_contig1111.1061.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTD
DVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLS
QQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAF
DAMDNVVMVDEKCF
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mRNA from alignment at F-serratus_M_contig1111:271010..271516-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1111.1061.1 ID=mRNA_F-serratus_M_contig1111.1061.1|Name=mRNA_F-serratus_M_contig1111.1061.1|organism=Fucus serratus male|type=mRNA|length=507bp|location=Sequence derived from alignment at F-serratus_M_contig1111:271010..271516- (Fucus serratus male)
AATCTCGATGAAAAAATGAGACATCGTTTGATCGAGCACCTCCTTTCCGG CAGTACTGGAGGGAAACTTGGGCGGGGCGACATCCAGGACGCCGCGGAGA AGTTCAAGTGTTCCCGCTATCAGGTCATGGGAGTGTGGCGTCGCTTCGAG CAGCAGAAGACCGACGATGTGATGGACATCAATCTGCGCAACAACCGTGG TGGACACTCAGGTAGGAAACGCATCGACATCGAGAAATACAAGGAAAAAC TACAAGAGGTACCGCTCAAAAATCGCACCACCCAGAGGAATGTTGCGAAA CAACTGGGCCTCTCCCAACAAACCCTTCGCAACAACCTCAAGCACCTGGG GTTGCGTTCGGCGTCCCGATTCCTCAAGCCGGTTCTCTCGGAAGAGGGCA AGAAGAAGAGGGTGGATTGGGCCCTGCGTTGGGTGCGTGACGGCCATGGT GGTGCTCGCGCCTTCGACGCGATGGACAACGTGGTCATGGTGGATGAGAA ATGTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1111:271010..271516-

>mRNA_F-serratus_M_contig1111.1061.1 ID=mRNA_F-serratus_M_contig1111.1061.1|Name=mRNA_F-serratus_M_contig1111.1061.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig1111:271010..271516- (Fucus serratus male)
ATGAGACATCGTTTGATCGAGCACCTCCTTTCCGGCAGTACTGGAGGGAA
ACTTGGGCGGGGCGACATCCAGGACGCCGCGGAGAAGTTCAAGTGTTCCC
GCTATCAGGTCATGGGAGTGTGGCGTCGCTTCGAGCAGCAGAAGACCGAC
GATGTGATGGACATCAATCTGCGCAACAACCGTGGTGGACACTCAGGTAG
GAAACGCATCGACATCGAGAAATACAAGGAAAAACTACAAGAGGTACCGC
TCAAAAATCGCACCACCCAGAGGAATGTTGCGAAACAACTGGGCCTCTCC
CAACAAACCCTTCGCAACAACCTCAAGCACCTGGGGTTGCGTTCGGCGTC
CCGATTCCTCAAGCCGGTTCTCTCGGAAGAGGGCAAGAAGAAGAGGGTGG
ATTGGGCCCTGCGTTGGGTGCGTGACGGCCATGGTGGTGCTCGCGCCTTC
GACGCGATGGACAACGTGGTCATGGTGGATGAGAAATGTTTTATGAGACA
TCGTTTGATCGAGCACCTCCTTTCCGGCAGTACTGGAGGGAAACTTGGGC
GGGGCGACATCCAGGACGCCGCGGAGAAGTTCAAGTGTTCCCGCTATCAG
GTCATGGGAGTGTGGCGTCGCTTCGAGCAGCAGAAGACCGACGATGTGAT
GGACATCAATCTGCGCAACAACCGTGGTGGACACTCAGGTAGGAAACGCA
TCGACATCGAGAAATACAAGGAAAAACTACAAGAGGTACCGCTCAAAAAT
CGCACCACCCAGAGGAATGTTGCGAAACAACTGGGCCTCTCCCAACAAAC
CCTTCGCAACAACCTCAAGCACCTGGGGTTGCGTTCGGCGTCCCGATTCC
TCAAGCCGGTTCTCTCGGAAGAGGGCAAGAAGAAGAGGGTGGATTGGGCC
CTGCGTTGGGTGCGTGACGGCCATGGTGGTGCTCGCGCCTTCGACGCGAT
GGACAACGTGGTCATGGTGGATGAGAAATGTTTT
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