mRNA_F-serratus_M_contig1111.1061.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE) HSP 1 Score: 122 bits (306), Expect = 4.740e-32 Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 1
Query: 28 LIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGA 456
++ LL GS G L GD++ +K + V W+ + Q+K D +L N R G+SG+K +DI KE LQ++ LKNRTT R++A LG+ + TL +NL +LGLRS SRFLKP+LS++ K +R+ WALRWVR G A
Sbjct: 1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDA 143
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 5.690e-23 Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSE 393
N + + +I HLL+GS G L G + AAEKF C +WRR++ Q V L N R G+SGRK + IE+ +E+L+++PL +RTTQR +A L + TL NLK LGLR+ S +KP L++
Sbjct: 15 NFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLTD 145
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: UPI0019D52509 (uncharacterized protein LOC120642743 n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D52509) HSP 1 Score: 86.3 bits (212), Expect = 1.500e-16 Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 16 MRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCF 507
+R ++ + LL S GKLG+ D ++F V +W + ++Q ++ +N+ N + G SGRK I I+ EKL+++PLKNR T +VA++LG+++ +++ L+ LR S +KP L+ K+ R+ W + + G F + + V +DEK F
Sbjct: 188 VRQQVYQALLMRSKNGKLGKNDTTIVGQQFGVKIRTVQRIWEQGKEQLAQNI-PVNVHNRKRGRSGRKAIPIDL--EKLRDIPLKNRMTIEDVARELGVNKSRIQSYLRKGQLRRHSSSIKPYLTSANKETRLKWCIDMIDQGLLDDPKFKDLFDFVFIDEKWF 348
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI) HSP 1 Score: 80.1 bits (196), Expect = 9.610e-15 Identity = 54/171 (31.58%), Postives = 92/171 (53.80%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARA--FDAMDNVVMVDEKCF 507
NL + R + E LL S G L +G + A F S + +W++ + + ++ +N+ + G+ GRK+I I+ K + E+PL+ RT R++AK L +S+ T+ +K +R+ S +KP L++E KK R+++ L + + G FD M N V +DEK F
Sbjct: 17 NLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKILIDPRK--VSEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWF 184
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.350e-14 Identity = 42/90 (46.67%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 133 VWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGK 402
+W R+E Q+ V + N R G+SGRK I I++ +E+L+++PL +RTTQR +A LG++ TL +NLK LGLR+ S+ LKP+L+ +GK
Sbjct: 20 LWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAHSKALKPLLTGDGK 109
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A811MKY6_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MKY6_9POAL) HSP 1 Score: 80.1 bits (196), Expect = 2.200e-14 Identity = 55/170 (32.35%), Postives = 92/170 (54.12%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGH-GGARAFDAMDNVVMVDEKCF 507
NL E R ++ LL S +L R A+ F+ SRY+V +W+R +Q + + +++R+ + SGRK++ I+ + + VPL R+T R++A+ +G+ + TL K LR S LKP+L+E+ K+ R+ W L + F AM N++ +DEK F
Sbjct: 191 NLTETERQQIYAALLERSNRRRLKRKATTIVAQMFQVSRYKVQRIWQRAKQCRAQGI-PVDVRSRKPKRSGRKKLQIDLSE--VLSVPLHRRSTIRSLAEAIGVKKSTLHRWFKKGLLRRHSSTLKPLLTEQNKRDRLQWCLSMLDPRTLPHEPKFRAMQNIIHMDEKWF 357
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: UPI0007EFDEEB (uncharacterized protein LOC108194372 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFDEEB) HSP 1 Score: 77.4 bits (189), Expect = 1.800e-13 Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 1
Query: 4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWV-RDGHGGARAFDAMDNVVMVDEKCF 507
L + R+ + LL S GKL + ++ A F S V VW+R ++ + V D++ + R + GRKRI I+ + + +PL+ R T R+ A L +S L NLK +R S +KP LSEE KK R+ + L + ++ F M NV+ +DEK F
Sbjct: 177 LSNEQRNAIYLALLRRSVNGKLKKNTSREVATLFSVSMRTVQRVWKRSKENMKNGVTDVSHK--RTKNCGRKRIQIDL--DHFRSIPLQERKTIRDAANALKVSTSVLSRNLKSGDIRRHSNAIKPFLSEENKKGRLQFCLDMLDKESLPHDPKFHDMQNVIHIDEKWF 341
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6A4ZBD2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZBD2_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 4.100e-13 Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 1
Query: 19 RHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDI-EKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLG-LRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCF 507
R E LL ST G+L G +++ A FKC + VW+R +D ++ + G+SGRK+ + + ++ ++ VP R T R++A GL + ++ +++ L+S + ++KP+L+E+ K R+D+A +VR G AF M+ V VDEK F
Sbjct: 17 RRAAYELLLQSSTNGRLKYGALKEVATYFKCHWKTISRVWKRGRLSLSDGSPHADVDSKLKGNSGRKKSRLADDFEGAIKAVPQHQRQTLRSLAAHCGLPKTSIVRHMQETKRLKSRASYVKPMLTEDNTKARLDFAKSFVRLLPSGNHAFVDMNEYVHVDEKWF 181
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6A4ZER9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZER9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.170e-12 Identity = 56/173 (32.37%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWR--RFEQQKTDDVMDINLRNNRGGHSGRKRI-DIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLG-LRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCF 507
NL R + E LL S GGKL G IQD A + C + +W+ R Q + + D+ + G+ GRK+ E+ K +Q VP R T R +A + + TL ++K L++ ++KP+L+ E + R+D+A ++R G F M +VV VDEK F
Sbjct: 21 NLKPTERRAVYEQLLERSIGGKLPYGAIQDVARWYYCHSRTIARIWKQGRLSQSLSHGLADVATKMT--GNCGRKKTRTTEEIKAAVQSVPHYQRQTLRALAANSQIPKTTLIRHMKEQNSLKARFSYVKPMLTAENTRTRLDFARSFLRLLSDGTTVFSIMHDVVHVDEKWF 191
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR) HSP 1 Score: 72.0 bits (175), Expect = 1.290e-11 Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDDVMDINLRNNRGGHSGRKRIDIEKYKEKLQEVPLKNRTTQRNVAKQLGLSQQTLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGAR-AFDAMDNVVMVDEKCF 507
N ++ + E LL GKL +G I AE F S V +W + T NL GRK+I + E ++++P + RT R++AK L +S+ +L +K LR S +KP LS + KK R+ + L + +G ++ +FD M + + +DEK F
Sbjct: 95 NFTTALKRAIYEMLLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKIQVNL--EDIKDIPFRRRTNIRSLAKALDVSKSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWF 262 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1111.1061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1111.1061.1 >prot_F-serratus_M_contig1111.1061.1 ID=prot_F-serratus_M_contig1111.1061.1|Name=mRNA_F-serratus_M_contig1111.1061.1|organism=Fucus serratus male|type=polypeptide|length=164bp MRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDback to top mRNA from alignment at F-serratus_M_contig1111:271010..271516- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1111.1061.1 ID=mRNA_F-serratus_M_contig1111.1061.1|Name=mRNA_F-serratus_M_contig1111.1061.1|organism=Fucus serratus male|type=mRNA|length=507bp|location=Sequence derived from alignment at F-serratus_M_contig1111:271010..271516- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1111:271010..271516- >mRNA_F-serratus_M_contig1111.1061.1 ID=mRNA_F-serratus_M_contig1111.1061.1|Name=mRNA_F-serratus_M_contig1111.1061.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig1111:271010..271516- (Fucus serratus male)back to top |