mRNA_F-serratus_M_contig1111.1056.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1111.1056.1
Unique NamemRNA_F-serratus_M_contig1111.1056.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1111.1056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1111contigF-serratus_M_contig1111:76826..79882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003460.1
Exons3
Model size1793
Cds size1515
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1111.1056.1prot_F-serratus_M_contig1111.1056.1Fucus serratus malepolypeptideF-serratus_M_contig1111 76826..79605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.214636-CDS-F-serratus_M_contig1111:76825..773201622928997.214636-CDS-F-serratus_M_contig1111:76825..77320Fucus serratus maleCDSF-serratus_M_contig1111 76826..77320 -
1690962662.0662782-CDS-F-serratus_M_contig1111:76825..773201690962662.0662782-CDS-F-serratus_M_contig1111:76825..77320Fucus serratus maleCDSF-serratus_M_contig1111 76826..77320 -
1622928997.2459588-CDS-F-serratus_M_contig1111:77778..787091622928997.2459588-CDS-F-serratus_M_contig1111:77778..78709Fucus serratus maleCDSF-serratus_M_contig1111 77779..78709 -
1690962662.077288-CDS-F-serratus_M_contig1111:77778..787091690962662.077288-CDS-F-serratus_M_contig1111:77778..78709Fucus serratus maleCDSF-serratus_M_contig1111 77779..78709 -
1622928997.2608755-CDS-F-serratus_M_contig1111:79516..796051622928997.2608755-CDS-F-serratus_M_contig1111:79516..79605Fucus serratus maleCDSF-serratus_M_contig1111 79517..79605 -
1690962662.0863872-CDS-F-serratus_M_contig1111:79516..796051690962662.0863872-CDS-F-serratus_M_contig1111:79516..79605Fucus serratus maleCDSF-serratus_M_contig1111 79517..79605 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.2763932-UTR-F-serratus_M_contig1111:79605..798821622928997.2763932-UTR-F-serratus_M_contig1111:79605..79882Fucus serratus maleUTRF-serratus_M_contig1111 79606..79882 -
1690962662.0943189-UTR-F-serratus_M_contig1111:79605..798821690962662.0943189-UTR-F-serratus_M_contig1111:79605..79882Fucus serratus maleUTRF-serratus_M_contig1111 79606..79882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1111.1056.1

>prot_F-serratus_M_contig1111.1056.1 ID=prot_F-serratus_M_contig1111.1056.1|Name=mRNA_F-serratus_M_contig1111.1056.1|organism=Fucus serratus male|type=polypeptide|length=505bp
MEGREGDASAPPDSPILSSIPMSLEEYMARYSHMRSGEQEPFFLSRRPPP
QHQATTGGDLFQGMAASAGTFPVRHWFDDNADPSQQESPRARSSDTPVRS
SISVPEPDSRERQHARNAMARRASPSPPLTGQVDTGCEDERQEYLPRGDS
DRENGRERPHTRAAYRGGRLQSSNMTRRGGRLGDWHLGGDSADISIFTRT
GRRFGSWHLRGDSTGGQVPSSPMSAASVTNNSHPDPSSPSLSHVAPARES
SVQPEADGGGSGLGNWPAMRRRSTERERPHAEGSVVQGGHPPVFDDIHSL
PNASSFQRRQAHGQRPPPGRRSLSDFLREIEDIVRAQRAESDDRDPPAAQ
TPSLGVHRGASVSDQSSVPSLTDRSSSSPAVGDRGDSRYAPPVERGRPSR
REPDSGVEGRDPRVEYPLGAPNAAGFFELPTELGNTHPLPPAEPWNREAG
GGYDSNHIRAHQRASTTISSGPSTTDAGGDASVSRQAMVQSTDMDHRGGL
SSMAP
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mRNA from alignment at F-serratus_M_contig1111:76826..79882-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1111.1056.1 ID=mRNA_F-serratus_M_contig1111.1056.1|Name=mRNA_F-serratus_M_contig1111.1056.1|organism=Fucus serratus male|type=mRNA|length=3057bp|location=Sequence derived from alignment at F-serratus_M_contig1111:76826..79882- (Fucus serratus male)
ATTCTGTTGGTTGTACGAGTAACGACGTCTCCACAGAACGAACGCAAGCG
GTCCTTGAAGGCCTGGAAGCGAAGGGTCACTGACTCAAGTCACGAGAACG
TAGCCGAGAGCTCCAGAGGATAACGGCGCGAGTAGCCTCGGTTGGGATCT
GCTGGAGCCGCCAAGTTTGCGGAATTTGTTCCCTTCAACGGGTACTTGTT
GTACATTTAGTACAGTATCTCTCTTGCTTCTCCTCGTGGAGTGAAATAAT
CAATCTGATCGGAGCAAAGCGGCGAAAATGGAAGGCCGTGAAGGCGATGC
GAGTGCGCCGCCCGACAGCCCCATCTTGTCTTCCATTCCCATGTCACTTG
AAGAATACATGGCCAGGTATGTCTGGACGTCGTTGTTTGCGCTACTACTG
AGCCAGCTGGTGTAAAGGGAGGGACCTTTTCCCCGACACAAACACTGATC
GAGGACGCTTCGAATATAATATTTCTTTCTTGAGAGATACGTGCGTTAGG
TCAACAACAAATGTTGGCAAGTGATGACTGAACAATCTTATCTTCAAACA
GAGTACACCGAAATTGTTGGAAATCTGGTGGTTGTACAAGTATCACAGCC
CCCCGCGAAGGGCAAAGTCAACCAAGGAACCCTACATGCTAAGGCGGCGA
AATCAAGATTTCCACGAATCGTACTTGTACCAAAAAACAAAAAGTACTGA
GTTGTAGACTAATGTGACCGCCGTGTACAGCTCTTATACGTCGCCGTAGA
CTGGTTCTACTCCTGTAAATATATCAGTGTACAGCTCTTATACGTCGCTG
TAGACTGGTTCTACTCCTTTAAATATATCAGAGAAACTAGATGCTTCGTC
AACTGCTGTCTTGCTTGTTGAGCTTCCTCGGATAGTAACTAGCTGGTACA
TTTTTAAAATACTACCAGGTAATATTTAACATTAGTCAAATAGTACTTTT
AGTACTTTAGTATTTATACTAAATACAGGACAAGAAGTACGTACGATCGA
CGTTGAAGATCTATTATGTACTTGTAGTCTAATTGCTTTGCTTTGTCTCT
TCAAAGGTTGATGAGAGTTATGTCCAGATTGGGATTGGCTCTAATGAGAG
TTGTAAGTGATGCACAAGGTTCTACAATCTTGACTCGTACCACCACTCCT
AACTGCCCACCAATCGCCCACAGGTACTCTCACATGCGCAGCGGTGAGCA
AGAGCCCTTTTTCTTATCGCGACGTCCCCCGCCCCAACACCAAGCAACAA
CAGGAGGAGACCTCTTCCAAGGGATGGCCGCATCCGCAGGAACATTCCCT
GTTCGACACTGGTTCGATGATAACGCCGACCCCTCTCAGCAGGAGTCACC
GCGCGCTCGTTCCTCAGACACCCCCGTGAGGAGCAGCATTTCCGTTCCCG
AGCCCGACTCTCGAGAGCGTCAGCACGCGCGAAACGCGATGGCACGGCGC
GCTTCGCCCAGTCCGCCCCTGACCGGACAAGTAGACACGGGCTGCGAGGA
CGAGAGACAAGAATATCTCCCGAGAGGTGATAGCGACCGCGAGAACGGAA
GAGAACGACCTCACACCCGCGCGGCGTATCGAGGCGGAAGACTCCAGAGC
TCTAATATGACGAGGAGGGGCGGGAGGCTGGGCGACTGGCACTTGGGGGG
AGACAGCGCGGATATTTCTATTTTCACGAGGACGGGTCGTAGATTCGGCA
GCTGGCACCTGAGGGGTGACAGCACGGGTGGACAGGTGCCGTCCTCCCCT
ATGAGCGCCGCATCTGTGACCAATAACAGCCACCCTGACCCTTCCTCGCC
CTCTCTCTCTCATGTTGCCCCCGCGAGGGAGTCAAGTGTCCAACCAGAAG
CCGATGGGGGAGGGAGCGGCCTGGGCAACTGGCCGGCTATGCGCAGGCGC
AGTACGGAGAGAGAGAGACCCCACGCTGAAGGCTCAGTCGTACAGGGAGG
TCACCCTCCGGTTTTCGATGATATTCATAGTCTGCCAAACGCGAGCAGCT
TCCAGAGGCGTCAAGCGCACGGTCAGCGACCCCCGCCAGGACGCCGGTCG
CTGTCGGATTTCTTGCGAGAGATTGAAGATATAGTGCGAGCTCAGAGGGC
CGAGGTGAGGTGATGTGGGTAGAAAGTTCGTGTCGGTATGCGGTAGCTTT
TGAAATTATTGAGGTCAGCGTGATCTACGATTTTCTGGGTCATAGGTGGC
GGCATCGAACGGCTCCAGTGAGCGAGCGGTTCTTGGCGGTGTGGACGCGC
TCAATGATGTGGAAGGGCGTTGATTTCGCTGATGCCCGCCGCTAATTGTG
GCTCGTCGTTCTTGGTAGTCGTTTTGGACAGAAAATACAAATTTGAAGAA
TGCATATGTTCTAAATGTTGGCGAAGTTCCTATAATATGCTCAGAAGGTC
TAGGTGCGTTCTGTATTTTTCTTTAAACACCGATCTTTCCTGTCTCTTGC
CCATGTATCTATCTCTATCTCATTATGTGCGTTTTATACGGAATTATGTT
TCTTTTATCGATGGGGGGGGGGGTTGTTGGGCATCATCGTTTTGTTTCCT
TGCGAATAAAAGAGCGATGATCGCGACCCACCGGCCGCACAGACTCCAAG
CTTGGGGGTCCACCGAGGCGCCAGCGTCAGCGATCAATCATCTGTGCCAT
CTCTGACGGACCGCTCTAGCAGCTCCCCGGCGGTTGGCGACCGCGGCGAC
TCGCGTTATGCTCCCCCTGTCGAAAGGGGTCGCCCCTCGCGGCGGGAACC
AGACAGCGGTGTCGAGGGTCGCGACCCTCGTGTGGAGTATCCGTTGGGCG
CCCCGAACGCCGCAGGGTTCTTCGAGCTCCCCACGGAGCTAGGCAATACG
CATCCCCTACCGCCCGCGGAACCTTGGAACCGCGAAGCGGGCGGGGGCTA
CGATTCCAATCACATACGCGCGCACCAGCGAGCATCAACGACGATTTCGT
CAGGGCCTTCAACTACTGACGCTGGTGGTGATGCTTCGGTGAGCCGGCAA
GCGATGGTACAGTCAACTGACATGGACCACCGCGGTGGTCTTTCCTCTAT
GGCTCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1111:76826..79882-

>mRNA_F-serratus_M_contig1111.1056.1 ID=mRNA_F-serratus_M_contig1111.1056.1|Name=mRNA_F-serratus_M_contig1111.1056.1|organism=Fucus serratus male|type=CDS|length=3030bp|location=Sequence derived from alignment at F-serratus_M_contig1111:76826..79882- (Fucus serratus male)
ATGGAAGGCCGTGAAGGCGATGCGAGTGCGCCGCCCGACAGCCCCATCTT
GTCTTCCATTCCCATGTCACTTGAAGAATACATGGCCAGATGGAAGGCCG
TGAAGGCGATGCGAGTGCGCCGCCCGACAGCCCCATCTTGTCTTCCATTC
CCATGTCACTTGAAGAATACATGGCCAGGTACTCTCACATGCGCAGCGGT
GAGCAAGAGCCCTTTTTCTTATCGCGACGTCCCCCGCCCCAACACCAAGC
AACAACAGGAGGAGACCTCTTCCAAGGGATGGCCGCATCCGCAGGAACAT
TCCCTGTTCGACACTGGTTCGATGATAACGCCGACCCCTCTCAGCAGGAG
TCACCGCGCGCTCGTTCCTCAGACACCCCCGTGAGGAGCAGCATTTCCGT
TCCCGAGCCCGACTCTCGAGAGCGTCAGCACGCGCGAAACGCGATGGCAC
GGCGCGCTTCGCCCAGTCCGCCCCTGACCGGACAAGTAGACACGGGCTGC
GAGGACGAGAGACAAGAATATCTCCCGAGAGGTGATAGCGACCGCGAGAA
CGGAAGAGAACGACCTCACACCCGCGCGGCGTATCGAGGCGGAAGACTCC
AGAGCTCTAATATGACGAGGAGGGGCGGGAGGCTGGGCGACTGGCACTTG
GGGGGAGACAGCGCGGATATTTCTATTTTCACGAGGACGGGTCGTAGATT
CGGCAGCTGGCACCTGAGGGGTGACAGCACGGGTGGACAGGTGCCGTCCT
CCCCTATGAGCGCCGCATCTGTGACCAATAACAGCCACCCTGACCCTTCC
TCGCCCTCTCTCTCTCATGTTGCCCCCGCGAGGGAGTCAAGTGTCCAACC
AGAAGCCGATGGGGGAGGGAGCGGCCTGGGCAACTGGCCGGCTATGCGCA
GGCGCAGTACGGAGAGAGAGAGACCCCACGCTGAAGGCTCAGTCGTACAG
GGAGGTCACCCTCCGGTTTTCGATGATATTCATAGTCTGCCAAACGCGAG
CAGCTTCCAGAGGCGTCAAGCGCACGGTCAGCGACCCCCGCCAGGACGCC
GGTCGCTGTCGGATTTCTTGCGAGAGATTGAAGATATAGTGCGAGCTCAG
AGGGCCGAGGTACTCTCACATGCGCAGCGGTGAGCAAGAGCCCTTTTTCT
TATCGCGACGTCCCCCGCCCCAACACCAAGCAACAACAGGAGGAGACCTC
TTCCAAGGGATGGCCGCATCCGCAGGAACATTCCCTGTTCGACACTGGTT
CGATGATAACGCCGACCCCTCTCAGCAGGAGTCACCGCGCGCTCGTTCCT
CAGACACCCCCGTGAGGAGCAGCATTTCCGTTCCCGAGCCCGACTCTCGA
GAGCGTCAGCACGCGCGAAACGCGATGGCACGGCGCGCTTCGCCCAGTCC
GCCCCTGACCGGACAAGTAGACACGGGCTGCGAGGACGAGAGACAAGAAT
ATCTCCCGAGAGGTGATAGCGACCGCGAGAACGGAAGAGAACGACCTCAC
ACCCGCGCGGCGTATCGAGGCGGAAGACTCCAGAGCTCTAATATGACGAG
GAGGGGCGGGAGGCTGGGCGACTGGCACTTGGGGGGAGACAGCGCGGATA
TTTCTATTTTCACGAGGACGGGTCGTAGATTCGGCAGCTGGCACCTGAGG
GGTGACAGCACGGGTGGACAGGTGCCGTCCTCCCCTATGAGCGCCGCATC
TGTGACCAATAACAGCCACCCTGACCCTTCCTCGCCCTCTCTCTCTCATG
TTGCCCCCGCGAGGGAGTCAAGTGTCCAACCAGAAGCCGATGGGGGAGGG
AGCGGCCTGGGCAACTGGCCGGCTATGCGCAGGCGCAGTACGGAGAGAGA
GAGACCCCACGCTGAAGGCTCAGTCGTACAGGGAGGTCACCCTCCGGTTT
TCGATGATATTCATAGTCTGCCAAACGCGAGCAGCTTCCAGAGGCGTCAA
GCGCACGGTCAGCGACCCCCGCCAGGACGCCGGTCGCTGTCGGATTTCTT
GCGAGAGATTGAAGATATAGTGCGAGCTCAGAGGGCCGAGAGCGATGATC
GCGACCCACCGGCCGCACAGACTCCAAGCTTGGGGGTCCACCGAGGCGCC
AGCGTCAGCGATCAATCATCTGTGCCATCTCTGACGGACCGCTCTAGCAG
CTCCCCGGCGGTTGGCGACCGCGGCGACTCGCGTTATGCTCCCCCTGTCG
AAAGGGGTCGCCCCTCGCGGCGGGAACCAGACAGCGGTGTCGAGGGTCGC
GACCCTCGTGTGGAGTATCCGTTGGGCGCCCCGAACGCCGCAGGGTTCTT
CGAGCTCCCCACGGAGCTAGGCAATACGCATCCCCTACCGCCCGCGGAAC
CTTGGAACCGCGAAGCGGGCGGGGGCTACGATTCCAATCACATACGCGCG
CACCAGCGAGCATCAACGACGATTTCGTCAGGGCCTTCAACTACTGACGC
TGGTGGTGATGCTTCGGTGAGCCGGCAAGCGATGGTACAGTCAACTGACA
TGGACCACCGCGGTGGTCTTTCCTCTATGGCTCCGAGCGATGATCGCGAC
CCACCGGCCGCACAGACTCCAAGCTTGGGGGTCCACCGAGGCGCCAGCGT
CAGCGATCAATCATCTGTGCCATCTCTGACGGACCGCTCTAGCAGCTCCC
CGGCGGTTGGCGACCGCGGCGACTCGCGTTATGCTCCCCCTGTCGAAAGG
GGTCGCCCCTCGCGGCGGGAACCAGACAGCGGTGTCGAGGGTCGCGACCC
TCGTGTGGAGTATCCGTTGGGCGCCCCGAACGCCGCAGGGTTCTTCGAGC
TCCCCACGGAGCTAGGCAATACGCATCCCCTACCGCCCGCGGAACCTTGG
AACCGCGAAGCGGGCGGGGGCTACGATTCCAATCACATACGCGCGCACCA
GCGAGCATCAACGACGATTTCGTCAGGGCCTTCAACTACTGACGCTGGTG
GTGATGCTTCGGTGAGCCGGCAAGCGATGGTACAGTCAACTGACATGGAC
CACCGCGGTGGTCTTTCCTCTATGGCTCCG
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