mRNA_F-serratus_M_contig1110.1053.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1110.1053.1
Unique NamemRNA_F-serratus_M_contig1110.1053.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1110.1053.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.800e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:  266 MKGDLTEFVQQCLHCVDSRAGNVVPRPLGE 355
            M  D+ EFVQQCLHC+DS++G +VPRP GE
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGE 30
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BLAST of mRNA_F-serratus_M_contig1110.1053.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.000e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:  266 MKGDLTEFVQQCLHCVDSRAGNVVPRPLGE 355
            M  D+ EFVQQCLHC+DS++G +VPRP GE
Sbjct:  448 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGE 477
[Close]
BLAST of mRNA_F-serratus_M_contig1110.1053.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.160e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:  266 MKGDLTEFVQQCLHCVDSRAGNVVPRPLGE 355
            M  D+ EFVQQCLHC+DS++G +VPRP GE
Sbjct: 1224 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGE 1253
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1110.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE2.800e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE3.000e-566.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE3.160e-566.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1110contigF-serratus_M_contig1110:221310..223422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size362
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1110.1053.1prot_F-serratus_M_contig1110.1053.1Fucus serratus malepolypeptideF-serratus_M_contig1110 221376..223315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.115795-UTR-F-serratus_M_contig1110:221309..2213751622928997.115795-UTR-F-serratus_M_contig1110:221309..221375Fucus serratus maleUTRF-serratus_M_contig1110 221310..221375 +
1690962662.033038-UTR-F-serratus_M_contig1110:221309..2213751690962662.033038-UTR-F-serratus_M_contig1110:221309..221375Fucus serratus maleUTRF-serratus_M_contig1110 221310..221375 +
1622928997.163833-UTR-F-serratus_M_contig1110:223315..2234221622928997.163833-UTR-F-serratus_M_contig1110:223315..223422Fucus serratus maleUTRF-serratus_M_contig1110 223316..223422 +
1690962662.0587342-UTR-F-serratus_M_contig1110:223315..2234221690962662.0587342-UTR-F-serratus_M_contig1110:223315..223422Fucus serratus maleUTRF-serratus_M_contig1110 223316..223422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.1330001-CDS-F-serratus_M_contig1110:221375..2214471622928997.1330001-CDS-F-serratus_M_contig1110:221375..221447Fucus serratus maleCDSF-serratus_M_contig1110 221376..221447 +
1690962662.0411165-CDS-F-serratus_M_contig1110:221375..2214471690962662.0411165-CDS-F-serratus_M_contig1110:221375..221447Fucus serratus maleCDSF-serratus_M_contig1110 221376..221447 +
1622928997.1488423-CDS-F-serratus_M_contig1110:223198..2233151622928997.1488423-CDS-F-serratus_M_contig1110:223198..223315Fucus serratus maleCDSF-serratus_M_contig1110 223199..223315 +
1690962662.0490322-CDS-F-serratus_M_contig1110:223198..2233151690962662.0490322-CDS-F-serratus_M_contig1110:223198..223315Fucus serratus maleCDSF-serratus_M_contig1110 223199..223315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1110.1053.1

>prot_F-serratus_M_contig1110.1053.1 ID=prot_F-serratus_M_contig1110.1053.1|Name=mRNA_F-serratus_M_contig1110.1053.1|organism=Fucus serratus male|type=polypeptide|length=63bp
MDSEGMSSSAGGQFGGGTLGGSGMVREARIISAQGCESNWDANQMRELLY
YDRSVHRHLHLR*
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mRNA from alignment at F-serratus_M_contig1110:221310..223422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1110.1053.1 ID=mRNA_F-serratus_M_contig1110.1053.1|Name=mRNA_F-serratus_M_contig1110.1053.1|organism=Fucus serratus male|type=mRNA|length=2113bp|location=Sequence derived from alignment at F-serratus_M_contig1110:221310..223422+ (Fucus serratus male)
TATAAGGAGAGAGTCTAGTGTGGAAGATTTGTGGTCGCTGGGTCTTGGAT
CGAGGGAGATTCTAAGATGGATAGCGAAGGAATGTCGAGCTCGGCTGGAG
GCCAGTTCGGTGGCGGTACTCTTGGAGGAAGTGGCATGGTGAGCAACTTG
GTTTTGAACTCGACTGAGGTTAGGCCACCATACTCTTTACTAGTACAAAA
AAGTTCTCTCTCCGAAGCTGTTGCGAAACAGTTTAGGACAGCGTATGTTG
ATTACAGAGAGAAGATTGCGGTTCAGACCGCTCAGGATGGAATTCCTAGG
CGCGTTGCACGAGTTGACGAGTTGATGGCGTTGAGTCATCGGCGTACTAT
CGCGATGATGTTTTACAGAAACGCTCGTGATCTGAGTGAACTGCAACTTT
GGGACGGCCTAGGAAAGATTGCCAAGGTTCAGCGTGGCGCAGATATTGAT
GCTTACCAACTGCAGCGTGACCTGCAACAACTATTGCAGTGGAGTGCCAA
GCGTTCTCTTTCAATAACTTGACCCACGTGACTGGATGTCTTGTGGGATA
CCTGGAGGAGAGCAATCTAACCAGTACATTTATGAAGGAGGATGGTAGCT
GGTTAAAAGGTCCGGGAAAAATTGTTGCACGCCTGTGGATTGATGGTCTG
ACCCCGTCGAGGTTCCAGAGGGCAGCGCGCTGCCGCTGTGAACTCATGTC
TGTTGAGGGTGACCCTGCCGAGGTAATGGAGGTCACGCAGAAGATGGTGG
AAAAGTATGAGAAGGCTGAACAGCTTCTCGGGGTCAGTGTCCCAGTGGGC
AATGGCAACGGTGATGGCGGCAAGGTAGCCGTTGGGGTTTCAGTTATGTC
AGCTGGTTCAAGCCCCAAAAGACTTCGTCATTCATGGGACGGTGTGATGG
GTCTGGTGAGTCTCGGTATTTTAGTACTGAGAAGCCGAAAGATAGGTCTG
GTAAATCTCGGTCTAATTGGTCTGATGAATCTCGGTATATTAGTACTGAG
AAGCCGAAAGATAGGTCTGGTAAATCTCGGTCTAATCGGTCTGATGAATC
TCGGTCTATTAGTACTGAGAAGCCGAAAGCGGTATCGGCGGCGGCTGTGT
CGCAGGGACCTTCTTGCCGGTTTCGAGACCAGCTGAAAGTGGAGGAAGGT
CCATGGAGTAGGACTTGGTTGCGGCAGCAGGGGGGCGACAGGAGCGTCTC
GCATCGGGCCGTGTTTGTGGGGCCACTATCGTCGGATAGTGGTGGTGATG
ACCATGTATGGGTGAAGATGCCGCGGGCTGCCGTCGAGGAGCAGCTAGCT
GCTGGGCCGGAGTCTTCCAGCATTAGTGATTCGGAGAGTGAGACATCTGT
GACTCATTCTCGACGCATTACTGGTGGTACGCGCATGGAAGCGCTTGGTG
ATGTGGACATTCGGGCGGTTGATGTCGAGCCAGTTCAACTTCAATGCTCG
TCAAACGTCGTTGTGCCGGGAGATATGGTCGGTGACTCAATGACGGTGGG
CACTGTTTTAGACTCCGGATCGGGTACTACTTGTCCGTCGGAACAGTTGA
CGCAGCAGATAGAGCAACATTTCCGAGACGAACCACAAGTTCATCCATGT
GTGAAGGAGATGTCTGTTCCGCTGGCGAATAGACAGAAGGTTGTGGTGAG
GAATCAACCAGCAAAAATTTCGAAAGTACAAGCCGGCGCTCGCGAGGAGT
CTACGAGACTGTCGATTGGCCGGCAGCAACGAGAGACGGCTTCGACTGAG
CAAAGCAAGCAGTTCGACCCAGGAGGGTGACGGAGGAGACTTTACTTTCC
GTCGAAAACGGATTCCGCTGTGCTTTCCTTTGTCTGTATATCTCGTATTT
CTACCTTGTTGTATTTTTTCTGTCTTGTCCGCAAAGCAGGTACGAGAGGC
GAGGATAATTTCCGCTCAGGGATGCGAGAGCAATTGGGATGCAAACCAGA
TGCGTGAACTGCTGTACTACGACAGGAGCGTGCATCGTCATCTCCATTTG
CGTTAACGAAGGGTAGATGAAAGGGGATTTGACCGAGTTTGTTCAACAGT
GTCTACACTGTGTGGACTCTCGGGCGGGGAATGTGGTCCCCCGTCCGTTA
GGTGAGATACTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1110:221310..223422+

>mRNA_F-serratus_M_contig1110.1053.1 ID=mRNA_F-serratus_M_contig1110.1053.1|Name=mRNA_F-serratus_M_contig1110.1053.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig1110:221310..223422+ (Fucus serratus male)
ATGGATAGCGAAGGAATGTCGAGCTCGGCTGGAGGCCAGTTCGGTGGCGG
TACTCTTGGAGGAAGTGGCATGATGGATAGCGAAGGAATGTCGAGCTCGG
CTGGAGGCCAGTTCGGTGGCGGTACTCTTGGAGGAAGTGGCATGGTACGA
GAGGCGAGGATAATTTCCGCTCAGGGATGCGAGAGCAATTGGGATGCAAA
CCAGATGCGTGAACTGCTGTACTACGACAGGAGCGTGCATCGTCATCTCC
ATTTGCGTTAAGTACGAGAGGCGAGGATAATTTCCGCTCAGGGATGCGAG
AGCAATTGGGATGCAAACCAGATGCGTGAACTGCTGTACTACGACAGGAG
CGTGCATCGTCATCTCCATTTGCGTTAA
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