mRNA_F-serratus_M_contig111.1038.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig111.1038.1
Unique NamemRNA_F-serratus_M_contig111.1038.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig111.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig111contigF-serratus_M_contig111:327645..331750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-16_002350.1
Exons3
Model size1953
Cds size1707
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig111.1038.1prot_F-serratus_M_contig111.1038.1Fucus serratus malepolypeptideF-serratus_M_contig111 327860..331719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.1927083-UTR-F-serratus_M_contig111:327644..3278591622928991.1927083-UTR-F-serratus_M_contig111:327644..327859Fucus serratus maleUTRF-serratus_M_contig111 327645..327859 -
1690962659.2689865-UTR-F-serratus_M_contig111:327644..3278591690962659.2689865-UTR-F-serratus_M_contig111:327644..327859Fucus serratus maleUTRF-serratus_M_contig111 327645..327859 -
1622928991.253721-UTR-F-serratus_M_contig111:331719..3317501622928991.253721-UTR-F-serratus_M_contig111:331719..331750Fucus serratus maleUTRF-serratus_M_contig111 331720..331750 -
1690962659.3025036-UTR-F-serratus_M_contig111:331719..3317501690962659.3025036-UTR-F-serratus_M_contig111:331719..331750Fucus serratus maleUTRF-serratus_M_contig111 331720..331750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.20742-CDS-F-serratus_M_contig111:327859..3292871622928991.20742-CDS-F-serratus_M_contig111:327859..329287Fucus serratus maleCDSF-serratus_M_contig111 327860..329287 -
1690962659.2797692-CDS-F-serratus_M_contig111:327859..3292871690962659.2797692-CDS-F-serratus_M_contig111:327859..329287Fucus serratus maleCDSF-serratus_M_contig111 327860..329287 -
1622928991.2236636-CDS-F-serratus_M_contig111:329895..3299811622928991.2236636-CDS-F-serratus_M_contig111:329895..329981Fucus serratus maleCDSF-serratus_M_contig111 329896..329981 -
1690962659.287198-CDS-F-serratus_M_contig111:329895..3299811690962659.287198-CDS-F-serratus_M_contig111:329895..329981Fucus serratus maleCDSF-serratus_M_contig111 329896..329981 -
1622928991.236323-CDS-F-serratus_M_contig111:331526..3317191622928991.236323-CDS-F-serratus_M_contig111:331526..331719Fucus serratus maleCDSF-serratus_M_contig111 331527..331719 -
1690962659.294895-CDS-F-serratus_M_contig111:331526..3317191690962659.294895-CDS-F-serratus_M_contig111:331526..331719Fucus serratus maleCDSF-serratus_M_contig111 331527..331719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig111.1038.1

>prot_F-serratus_M_contig111.1038.1 ID=prot_F-serratus_M_contig111.1038.1|Name=mRNA_F-serratus_M_contig111.1038.1|organism=Fucus serratus male|type=polypeptide|length=569bp
MMMAADSTASENSHNNDIPASPPRTTSERTAKPGRQPSTTQAGFRAIRGE
ASPRRTGMSNCSVCDTKFTIFEHRHICQKCQEPVCNRCSRSRKVFLAGTR
PKRVCDNCVQTFPSATKIVSDMSNTIESGNRSRLTLPASEATDTCAERTM
LSPSPATSFFGIGMGGMPSPPRLPPPTPAGGDDSAPTPLATAFARFRVEA
KAVFGGRRASGDIVENKKPEIPTAAATKVKTPPSSSSPPPAQQQDRVQGD
MELVTNGDQGQAGSGDKGPDFNSAMSAADVVPVVAAAEMQEDAEASHAQV
TNEAADTFDRTVPGLDVSHFSSTAACTPTNYFTAAAAAPDYHKTDMQISI
HSEVSDGDVVPLCPHETNEGDTVDGAPVEFKITAAETTAGANPTPFLAAL
GPSIAAPASHSTTASQSQQDQEVVRNEVAVKDTDGSQPEETGKTDIVNGA
ELKAAEIDVSINTTVDILASATPSTGMPAFAAPELSPEEASETSGTVQTN
AVDGTSPPAPEEHHTEKDSETAAANSALTSSKKSGVCLIWMHFTIEVWGC
LAAVFMGLAVGLLLLVRD*
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mRNA from alignment at F-serratus_M_contig111:327645..331750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig111.1038.1 ID=mRNA_F-serratus_M_contig111.1038.1|Name=mRNA_F-serratus_M_contig111.1038.1|organism=Fucus serratus male|type=mRNA|length=4106bp|location=Sequence derived from alignment at F-serratus_M_contig111:327645..331750- (Fucus serratus male)
ACTTGTGGCTCTCGTCGGAAGCAACCGTATCATGATGATGGCCGCCGATT
CTACAGCTTCCGAGAACAGTCACAACAACGACATACCCGCTTCGCCTCCT
CGAACCACTTCCGAAAGGACTGCCAAGCCTGGGCGCCAGCCTAGTACGAC
ACAAGCAGGATTCAGGGCTATCCGGGGGGAGGCCTCTCCCCGGCGGACGG
GCATGTCCAACTGCAGCGTGTGTGGTGAGTGCCGTGAGAACATGTTGGAG
CTTTTGTACATACAGCGGTATACTATTTAGTAGTACTACAACAGTAGTAG
TAGTAGTCATGGGTACTACAACAGTGGAGCCCCCCCTGTACAGCAATATA
CTCTGTACTTGAGTACTTCTAGCGTTTCATTATCGTGGATACAGTACATA
CGTACTGTATTTTCGATATTACAGTCAGTACAGTCACAATACAGGAGTGG
CACCCATGTATGCATACTTACCCTCACACGGGAGAACAGAGGGCATGGGT
GTGTCTCTTGCGATTCGTGCCGGTAGCGGCTGTGATCACTTGAACAATAA
AGGGAAGAACGTAGTTCTAATCGTTGCCGATATCGCTATCACACTTTACC
AGAGATCCGTGCCGCGGGCGAATGCTGACATTCGTCCGATTGTGTCATGT
CGAGTGTTCCCGTAAAGGGTCCAGGCTGGAGGGGTCCAAGTACAATAGTT
TACTATATTCGAGTGTTTGCGAAACCCATATTTATATTGATGAGATTTCA
TTTTATGAGATGCGGACCAGAGTCATCACAAACGAACATCTCAAAAAAAT
GTTGCCGTGCGAAAGTCAAACATATGAGTTTATGCTCTCGATGCTACTGT
ATGTATTTCTCGAATTTGTCATCTCACCGTCCCAAAGATACGATTGGTTA
TTACAAGAACATTTCCTTGCCTTACTAGTCAACACAATGGCTAAAAAGGA
AGAGACCCAACGTCCTACTAAGCGTTGCACTCGCATGGGCGCGTACGCAC
GAAGCGAAATTTTCACCCCGAACCATCGGCAGTAGAGTAGCCGAGGAGTT
TCGTCCCGTGATCGCTGCCTCTTTGCCCACTGCGTTAGTTAGTTATTGTA
GTAGTAGTCATCCCCCCAACGACGAGTATATTTCTAAATTACCAACAAAA
ATTTCCCCCTATCGGGGGCGGATCAGAAGGTTTAGGTGCATTCAGATTTT
TCTTCAAACACCATGCACCCCTCTACCACCCTCCGAGCTCACGCAACTTC
AGGCGCTCTGCGGCACAAAGCATCAATAATCTGTACCGCCGATCGACTTG
AACCGTCTGGATGTTGTTGTGTCTCTCAAGAGTGGACGATCGATCATACA
GAGTGTTGCTAAAAAATATATCGCTCTCTCGTATTGCTCCCGCAGTGCAG
CACTCAGCAAGGTCACTAATTATTACCTGGTATAGTACAGTAATACAGAC
CAGTAGATCAGTTCGAGGTCCTTGGCCAACCACATCGATGTATCTTTTGC
GTCTGGTCCGCACCATAATTATGACTTTTAATTGTGGCTTTTGGGCAAAA
TCCCATGTCATACCGATCGTATACTTGTAAGTACAACAGAGTAGTAGTGC
AGTACAAGTAGAAGAGTTTTACATGTGTACACCAGTGGTACAGCAGTACT
TCAAAATAGAGCAGAGTTTGTTGGAGTATCATGCCCTGCCTGGATCTTCG
AAACAGCATCCTGAACGCTCGTCTCTACCCCGTCAATTGATCCCTCCTTG
TTATTTCTCATTTATGCAGACACGAAGTTCACAATCTTCGAACACAGACA
CATATGTCAGAAATGCCAGGAGCCAGTGTGCAACCGGTGCTCGCGTAGCC
GCAAGGTGAACTACTGAACCCTCGAGGGCTGCAAAAGCTACATACGGTAG
CAATGAGTACAAGTAGCTCTTGACACAGCAGATTGTCTGACGAGTCACTG
GCGCTACTTACTTTTCTACGAGTAGCGTTTTGTTTTTCATTATCGTGCCT
CGTACAGCGCCATGGCATCGTTTTGCAGCTTGAGGTGTTACGCTCTCGTT
GATCGTGTCACTGTACTTGTAATCGTAGCAGCTGTCGTGCAAAGCTTCTC
TCTTCCGCCATAAATATGAGGTCATTCAACGTATGTCTCAAATCTTGCTG
CTAGTATAGAGCATACCACTGCGCAGCCGGATACGGATAGAGCGCTGCCC
TCGCTTGAAATACCTCAAAATGTGCCGTACTACTTGTATGCTATCAATAC
CATACAGACAGGATAACTTACAGTAATGATACTTCTTGGTAAGGTTGCCG
TTCTTAAATCCGCCTTTGCCCATTTCAGGGGCTAAATATTTCAAGTGGTT
CGTCAAGCGGCCTTGGCAGTCACAGCAGGCGGATTCTCGTTCCGAAGTCA
CTCATCCGCCATCTTCCTGTCATCTAATATCCTGCTCTCCAATGATTCTG
CCATACATTGCAGGTTTTTCTAGCCGGCACAAGACCCAAGCGTGTTTGCG
ATAATTGCGTTCAAACGTTCCCATCCGCGACGAAGATCGTCTCGGACATG
AGCAACACGATCGAATCAGGGAATCGTTCGCGGCTGACACTACCCGCCTC
GGAAGCGACTGATACCTGCGCCGAGCGAACGATGCTTTCTCCCAGCCCCG
CAACCTCATTTTTTGGAATCGGCATGGGTGGAATGCCATCGCCGCCGAGG
CTTCCGCCGCCGACACCAGCTGGGGGAGACGACTCGGCACCGACACCGCT
AGCAACTGCTTTCGCAAGATTTCGAGTCGAGGCTAAAGCAGTTTTCGGAG
GCCGCCGTGCAAGCGGCGACATTGTCGAGAATAAAAAGCCTGAGATACCA
ACTGCCGCCGCCACAAAGGTGAAAACGCCTCCATCGTCGTCCTCGCCGCC
ACCTGCGCAGCAGCAAGACCGGGTGCAAGGGGACATGGAGCTAGTTACCA
ATGGCGACCAAGGGCAGGCAGGGAGCGGTGATAAGGGGCCTGACTTCAAC
TCAGCGATGTCTGCCGCCGACGTCGTCCCGGTCGTAGCTGCGGCTGAAAT
GCAAGAAGACGCAGAAGCGTCTCACGCACAGGTTACCAATGAGGCCGCCG
ATACATTCGACAGGACTGTGCCGGGGCTGGACGTCTCCCACTTTTCGTCT
ACCGCTGCCTGTACCCCGACCAACTACTTCACCGCTGCAGCTGCCGCCCC
GGACTACCACAAGACAGACATGCAGATATCAATACACAGCGAGGTGTCAG
ATGGAGATGTTGTTCCACTCTGCCCTCATGAGACTAATGAGGGCGATACA
GTCGACGGTGCTCCGGTGGAGTTTAAAATCACCGCCGCTGAGACTACTGC
CGGCGCCAACCCTACCCCCTTCCTCGCCGCCTTAGGTCCTTCAATCGCCG
CTCCTGCCTCCCACTCCACCACCGCCAGCCAATCACAACAAGATCAAGAA
GTAGTGCGCAACGAGGTCGCAGTAAAAGACACAGACGGGTCTCAACCTGA
AGAGACCGGTAAGACCGACATCGTGAACGGCGCTGAGCTGAAGGCCGCTG
AGATCGATGTATCTATCAACACCACCGTTGACATTCTCGCCAGCGCAACA
CCGTCCACTGGCATGCCTGCCTTCGCAGCTCCGGAACTTTCGCCAGAAGA
GGCATCTGAGACATCCGGGACCGTTCAGACCAACGCAGTGGACGGTACTT
CGCCCCCAGCTCCCGAGGAGCACCACACGGAAAAGGACTCGGAAACCGCC
GCCGCCAATTCGGCTCTTACATCGAGTAAAAAAAGTGGCGTTTGTTTGAT
ATGGATGCATTTTACTATCGAAGTCTGGGGCTGTCTGGCGGCGGTTTTTA
TGGGGTTGGCAGTGGGCTTGCTTTTATTAGTGCGCGATTGATGGTTTTCT
GAGTCCTACCGCGCCATGTAGTCGACCGGGACTCGCGCCACCAAAACTTG
TGGACTTCCGCGTGTGCAAATGCATCTTGCGGAGCAAGGCCGTTCCAAGG
GGTCAGGTGGTACATCACTGTCCTTTTCGCTGTAAGATCACCGCTTGTCC
ACGTTTTCTCCGTAAATGGATGGAGTTGAGTTGGAACGGTATAAATATTC
TAGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig111:327645..331750-

>mRNA_F-serratus_M_contig111.1038.1 ID=mRNA_F-serratus_M_contig111.1038.1|Name=mRNA_F-serratus_M_contig111.1038.1|organism=Fucus serratus male|type=CDS|length=3414bp|location=Sequence derived from alignment at F-serratus_M_contig111:327645..331750- (Fucus serratus male)
ATGATGATGGCCGCCGATTCTACAGCTTCCGAGAACAGTCACAACAACGA
CATACCCGCTTCGCCTCCTCGAACCACTTCCGAAAGGACTGCCAAGCCTG
GGCGCCAGCCTAGTACGACACAAGCAGGATTCAGGGCTATCCGGGGGGAG
GCCTCTCCCCGGCGGACGGGCATGTCCAACTGCAGCGTGTGTGATGATGA
TGGCCGCCGATTCTACAGCTTCCGAGAACAGTCACAACAACGACATACCC
GCTTCGCCTCCTCGAACCACTTCCGAAAGGACTGCCAAGCCTGGGCGCCA
GCCTAGTACGACACAAGCAGGATTCAGGGCTATCCGGGGGGAGGCCTCTC
CCCGGCGGACGGGCATGTCCAACTGCAGCGTGTGTGACACGAAGTTCACA
ATCTTCGAACACAGACACATATGTCAGAAATGCCAGGAGCCAGTGTGCAA
CCGGTGCTCGCGTAGCCGCAAGACACGAAGTTCACAATCTTCGAACACAG
ACACATATGTCAGAAATGCCAGGAGCCAGTGTGCAACCGGTGCTCGCGTA
GCCGCAAGGTTTTTCTAGCCGGCACAAGACCCAAGCGTGTTTGCGATAAT
TGCGTTCAAACGTTCCCATCCGCGACGAAGATCGTCTCGGACATGAGCAA
CACGATCGAATCAGGGAATCGTTCGCGGCTGACACTACCCGCCTCGGAAG
CGACTGATACCTGCGCCGAGCGAACGATGCTTTCTCCCAGCCCCGCAACC
TCATTTTTTGGAATCGGCATGGGTGGAATGCCATCGCCGCCGAGGCTTCC
GCCGCCGACACCAGCTGGGGGAGACGACTCGGCACCGACACCGCTAGCAA
CTGCTTTCGCAAGATTTCGAGTCGAGGCTAAAGCAGTTTTCGGAGGCCGC
CGTGCAAGCGGCGACATTGTCGAGAATAAAAAGCCTGAGATACCAACTGC
CGCCGCCACAAAGGTGAAAACGCCTCCATCGTCGTCCTCGCCGCCACCTG
CGCAGCAGCAAGACCGGGTGCAAGGGGACATGGAGCTAGTTACCAATGGC
GACCAAGGGCAGGCAGGGAGCGGTGATAAGGGGCCTGACTTCAACTCAGC
GATGTCTGCCGCCGACGTCGTCCCGGTCGTAGCTGCGGCTGAAATGCAAG
AAGACGCAGAAGCGTCTCACGCACAGGTTACCAATGAGGCCGCCGATACA
TTCGACAGGACTGTGCCGGGGCTGGACGTCTCCCACTTTTCGTCTACCGC
TGCCTGTACCCCGACCAACTACTTCACCGCTGCAGCTGCCGCCCCGGACT
ACCACAAGACAGACATGCAGATATCAATACACAGCGAGGTGTCAGATGGA
GATGTTGTTCCACTCTGCCCTCATGAGACTAATGAGGGCGATACAGTCGA
CGGTGCTCCGGTGGAGTTTAAAATCACCGCCGCTGAGACTACTGCCGGCG
CCAACCCTACCCCCTTCCTCGCCGCCTTAGGTCCTTCAATCGCCGCTCCT
GCCTCCCACTCCACCACCGCCAGCCAATCACAACAAGATCAAGAAGTAGT
GCGCAACGAGGTCGCAGTAAAAGACACAGACGGGTCTCAACCTGAAGAGA
CCGGTAAGACCGACATCGTGAACGGCGCTGAGCTGAAGGCCGCTGAGATC
GATGTATCTATCAACACCACCGTTGACATTCTCGCCAGCGCAACACCGTC
CACTGGCATGCCTGCCTTCGCAGCTCCGGAACTTTCGCCAGAAGAGGCAT
CTGAGACATCCGGGACCGTTCAGACCAACGCAGTGGACGGTACTTCGCCC
CCAGCTCCCGAGGAGCACCACACGGAAAAGGACTCGGAAACCGCCGCCGC
CAATTCGGCTCTTACATCGAGTAAAAAAAGTGGCGTTTGTTTGATATGGA
TGCATTTTACTATCGAAGTCTGGGGCTGTCTGGCGGCGGTTTTTATGGGG
TTGGCAGTGGGCTTGCTTTTATTAGTGCGCGATTGAGTTTTTCTAGCCGG
CACAAGACCCAAGCGTGTTTGCGATAATTGCGTTCAAACGTTCCCATCCG
CGACGAAGATCGTCTCGGACATGAGCAACACGATCGAATCAGGGAATCGT
TCGCGGCTGACACTACCCGCCTCGGAAGCGACTGATACCTGCGCCGAGCG
AACGATGCTTTCTCCCAGCCCCGCAACCTCATTTTTTGGAATCGGCATGG
GTGGAATGCCATCGCCGCCGAGGCTTCCGCCGCCGACACCAGCTGGGGGA
GACGACTCGGCACCGACACCGCTAGCAACTGCTTTCGCAAGATTTCGAGT
CGAGGCTAAAGCAGTTTTCGGAGGCCGCCGTGCAAGCGGCGACATTGTCG
AGAATAAAAAGCCTGAGATACCAACTGCCGCCGCCACAAAGGTGAAAACG
CCTCCATCGTCGTCCTCGCCGCCACCTGCGCAGCAGCAAGACCGGGTGCA
AGGGGACATGGAGCTAGTTACCAATGGCGACCAAGGGCAGGCAGGGAGCG
GTGATAAGGGGCCTGACTTCAACTCAGCGATGTCTGCCGCCGACGTCGTC
CCGGTCGTAGCTGCGGCTGAAATGCAAGAAGACGCAGAAGCGTCTCACGC
ACAGGTTACCAATGAGGCCGCCGATACATTCGACAGGACTGTGCCGGGGC
TGGACGTCTCCCACTTTTCGTCTACCGCTGCCTGTACCCCGACCAACTAC
TTCACCGCTGCAGCTGCCGCCCCGGACTACCACAAGACAGACATGCAGAT
ATCAATACACAGCGAGGTGTCAGATGGAGATGTTGTTCCACTCTGCCCTC
ATGAGACTAATGAGGGCGATACAGTCGACGGTGCTCCGGTGGAGTTTAAA
ATCACCGCCGCTGAGACTACTGCCGGCGCCAACCCTACCCCCTTCCTCGC
CGCCTTAGGTCCTTCAATCGCCGCTCCTGCCTCCCACTCCACCACCGCCA
GCCAATCACAACAAGATCAAGAAGTAGTGCGCAACGAGGTCGCAGTAAAA
GACACAGACGGGTCTCAACCTGAAGAGACCGGTAAGACCGACATCGTGAA
CGGCGCTGAGCTGAAGGCCGCTGAGATCGATGTATCTATCAACACCACCG
TTGACATTCTCGCCAGCGCAACACCGTCCACTGGCATGCCTGCCTTCGCA
GCTCCGGAACTTTCGCCAGAAGAGGCATCTGAGACATCCGGGACCGTTCA
GACCAACGCAGTGGACGGTACTTCGCCCCCAGCTCCCGAGGAGCACCACA
CGGAAAAGGACTCGGAAACCGCCGCCGCCAATTCGGCTCTTACATCGAGT
AAAAAAAGTGGCGTTTGTTTGATATGGATGCATTTTACTATCGAAGTCTG
GGGCTGTCTGGCGGCGGTTTTTATGGGGTTGGCAGTGGGCTTGCTTTTAT
TAGTGCGCGATTGA
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