mRNA_F-serratus_M_contig111.1033.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A4S4LPF2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LPF2_9AGAM) HSP 1 Score: 185 bits (470), Expect = 1.190e-47 Identity = 101/296 (34.12%), Postives = 156/296 (52.70%), Query Frame = 1
Query: 1 KVGQNGRVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGYRD--SPNQIVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K G +G ++KYK R VAQG QV GI Y + P IR L + + DWE Q++V+ +L ++ E ++E P G+ + ++ L K +YGL + W KK L GF R D F WK +GK +++I VDD+ + S + ++L + + DLGE S+ G I RD+KARTV Q+ ++ T+ RF + P ST P + N Q + + EEMRG+P++EA+ ++ + A RPD+A+ L++F NPG HW+ V + L+Y
Sbjct: 401 KRGADGEIIKYKARLVAQGFTQVPGIDYSDTFAPVAKLESIRALLAIAARNDWEIHQMDVKNAYLNGDLEETIFMEQPPGFTTPGAAEKVCHLFKTIYGLKQSSRRWYKKLCDAFLKLGFTRCSVDHGVF-WKCVGKDILVIAASVDDLAIFSSALRLLESLKDELNKAFEMTDLGEISWLLGIEIRRDQKARTVALSQRAFIDTIVSRFNLENAK--PLSTPLDPSFPLNKTQCPSTPRQYEEMRGVPFQEAIGSVMYAARRTRPDIAFSVTYLSQFMQNPGKAHWEGVKRVLRY 693
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A2P6Q6P3_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6P3_ROSCH) HSP 1 Score: 179 bits (453), Expect = 4.470e-47 Identity = 102/299 (34.11%), Postives = 166/299 (55.52%), Query Frame = 1
Query: 1 KVGQNGRVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGYRDSPNQ--IVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPL---WKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K +N ++ K+K R V +G Q +GI + E+ P + IR+ L + + +D E QL+V+ FL ++ EE Y+E P G+ Q + +L+K +YGL A W KKF M+ G++R+ ADPC ++ + G +I+++YVDD+L++ + + DL S +KDLG G ITRDR+A+ + Q+RYV+ V ERF +++ +V +PL +K + E ++M GIPY AV +L + RPD+A+ ++++ NPG EHW+AV L+Y
Sbjct: 35 KRDENEQLTKFKARLVVKGFGQKEGIDFDEIFSPVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVERKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDMLIVGKDVSMIRKLKADLSKSFDMKDLGPAKQILGMEITRDRQAKKLWLSQERYVERVLERFNMKEAK-----SVSSPLGNHFKLSRLSCPTTQVEKDKMAGIPYSSAVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGREHWEAVKWILKY 328
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A2P6SP23_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SP23_ROSCH) HSP 1 Score: 182 bits (461), Expect = 4.030e-46 Identity = 103/299 (34.45%), Postives = 167/299 (55.85%), Query Frame = 1
Query: 1 KVGQNGRVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGYRDSPNQ--IVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPL---WKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K +N ++ K+K R V +G Q +GI + E+ P + IR+ L + + +D E QL+V+ FL ++ EE Y+E P G+ Q + +L+K +YGL A W KKF M+ G++R+ ADPC ++ + G +I+++YVDD+L++ + H+ DL S +KDLG G ITRDR+A+ + Q+RYV+ V ERF +++ +V +PL +K + E ++M GIPY AV +L + RPD+A+ ++++ NPG EHW+AV L+Y
Sbjct: 874 KRDENEQLTKFKARLVVKGFGQKEGIDFDEIFSPVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVEGKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDMLIVGKDVSMIHKLKADLSKSFDMKDLGPAKQILGMEITRDRQAKKLWLSQERYVERVLERFNMKEAK-----SVSSPLGNHFKLSRLSCPTTQVEKDKMAGIPYSSAVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGREHWEAVKWILKY 1167
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: UPI001F00A048 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00A048) HSP 1 Score: 178 bits (452), Expect = 5.810e-45 Identity = 100/289 (34.60%), Postives = 163/289 (56.40%), Query Frame = 1
Query: 19 RVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGYRDSPNQIV-RLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
+VVKYK R V +G +Q KGI + E+ P + IR+ L +++ ++ E Q++V+ FL + EE Y+E P G+ S + +V +L+K +YGL A W KKF M ++G++++ AD C ++ K V +++YVDD+L++ + ++ +Q ++L S +KDLG G ITRDRK R + Q++Y++ V RF + P S A +K + + EI EM +PY AV +L + RPD+A+ +++F NPG EHW+AV L+Y
Sbjct: 705 KVVKYKARLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGMVASMNLELEQMDVKTAFLHGGLDEEIYMEQPEGFEVSGDNLVCKLKKSLYGLKQAPRQWYKKFDSCMTSQGYKKTSADECVYIQKFSDGNFVALLLYVDDILIVGKDAKKINQLKKELSKSFDMKDLGPAQQILGMQITRDRKNRRLWLSQEKYIERVLARFNMNNAK--PVSIPLANHFKLSKRSCPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDIAHAVGKVSRFLSNPGKEHWEAVKWILRY 991
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR) HSP 1 Score: 169 bits (429), Expect = 3.120e-44 Identity = 99/297 (33.33%), Postives = 157/297 (52.86%), Query Frame = 1
Query: 1 KVGQNGRVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGYRDSPNQ--IVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKA-NWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K+ NG V ++K R VA+G Q +GI Y+E P +R+ + +++ D E Q++V+ FL + E+ Y+ P G++ + + +L+K YGL A W KF M GF +Q D C ++ K G I+V+YVDD+L+ S + H++ L + +KDLGE SY G I RDR + T+ Q+ Y+ V R+ ++ S + V+ ++ P+ + E E+MR IPY V ++ + RPD+AYIA L ++ NPG +HWKA K L+Y
Sbjct: 89 KLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYL-KMSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEK---EQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRY 381
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A5A7QRB1_STRAF (Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRB1_STRAF) HSP 1 Score: 173 bits (439), Expect = 3.050e-43 Identity = 104/299 (34.78%), Postives = 162/299 (54.18%), Query Frame = 1
Query: 1 KVGQNGRVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGY--RDSPNQIVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHL-GKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIR--KVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K G +G+V +K R VA+G Q++GI Y E P IR+ L V + +D+E Q++V+ FL N+ E+ Y++ P G+ + + +L + +YGL A W+ +F + + GF + + C V+K + G VVV +V+YVDD+L++ +K+E L +KDLGE + G + RDRK R + Q Y+ TV RF ++ K ++PF PL K P+ EI EEM+ +PY AV +L + RPD++Y +A++ NPG EHW AV L+Y
Sbjct: 845 KRGLDGKVQTFKARLVAKGYTQIEGIDYDETFSPVAMLKSIRILLAVAAHMDYEVWQMDVKTAFLNGNLQEDIYMQQPEGFIAEGREHLVCKLNRSIYGLKQASRSWNIRFDEVIQSYGFTQCPDEHC--VYKKISGSVVVFLVLYVDDILLIGNSKKELSDVKVWLSKQFDMKDLGEAGHILGIRLIRDRKKRMLCLSQSSYIDTVLARFSMQDSKKGMLPFRH-GIPLSKEMSPKTSKEI---EEMKTVPYASAVGSLMYAMLCTRPDISYAVGMVARYQSNPGREHWSAVKHILKY 1137
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 173 bits (439), Expect = 3.160e-43 Identity = 93/294 (31.63%), Postives = 156/294 (53.06%), Query Frame = 1
Query: 1 KVGQNGRVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGYRDSPNQIVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K + G+VVKYK R VAQG Q+ G+ + E P IR L + + +WE Q++V+ +L ++ EE Y+ P G+ D +I RL K +YGL +G W++K E+ G++R +ADPC ++W+ V II V+VDD+L+ + + + + DL+ + DLGE G I RDR+A + QQ Y++++ +R+++ + + + A ++A+ + + G Y V +L + A RPD++Y TL+K+ P P HW A + L+Y
Sbjct: 960 KTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEAD----DRLAG-GYASMVGSLMYAAVGTRPDISYAVQTLSKYTACPRPVHWTAAKRVLRY 1248
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A2N9IWX1_FAGSY (Uncharacterized protein n=7 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IWX1_FAGSY) HSP 1 Score: 171 bits (434), Expect = 1.380e-42 Identity = 99/290 (34.14%), Postives = 157/290 (54.14%), Query Frame = 1
Query: 19 RVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGY--RDSPNQIVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
++VKYK R V +G Q +GI + E+ P S IR+ L + + LD E Q++V+ FL ++ EE Y+ P G+ + +++ RL+K +YGL A W KKF M+ +G+ R+ AD C +V + +I+++YVDD+L++ + ++L S +KDLG G I RDRKA+ + Q++YV+ V ERF ++ P ST +K + + E E M IPY AV +L + RPD+A+ +++F NPG EHW+AV +Y
Sbjct: 846 KLVKYKARLVVKGFNQKQGIDFDEIFSPVVKMSSIRVILGLTASLDLELEQMDVKTAFLHGDLEEEIYMVQPEGFEAKGKEHKVCRLKKSLYGLKQAPRQWYKKFDSFMVGQGYTRTDADHCVYVRQFPNGKFIILLLYVDDMLIVGQDANMVGSLKKELFKSFDMKDLGPARQILGMQILRDRKAKKLWLSQEKYVERVLERFNMKHAK--PVSTPLGGHFKLSKKSCPSSNKEKENMASIPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFMVNPGKEHWEAVKWIFRY 1133
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A2N9FZK6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FZK6_FAGSY) HSP 1 Score: 171 bits (434), Expect = 1.470e-42 Identity = 99/290 (34.14%), Postives = 157/290 (54.14%), Query Frame = 1
Query: 19 RVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGY--RDSPNQIVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
++VKYK R V +G Q +GI + E+ P S IR+ L + + LD E Q++V+ FL ++ EE Y+ P G+ + +++ RL+K +YGL A W KKF M+ +G+ R+ AD C +V + +I+++YVDD+L++ + ++L S +KDLG G I RDRKA+ + Q++YV+ V ERF ++ P ST +K + + E E M IPY AV +L + RPD+A+ +++F NPG EHW+AV +Y
Sbjct: 1097 KLVKYKARLVVKGFNQKQGIDFDEIFSPVVKMSSIRVILGLTASLDLELEQMDVKTAFLHGDLEEEIYMVQPEGFEAKGKEHKVCRLKKSLYGLKQAPRQWYKKFDSFMVGQGYTRTDADHCVYVRQFPNGKFIILLLYVDDMLIVGQDANMVGSLKKELFKSFDMKDLGPARQILGMQILRDRKAKKLWLSQEKYVERVLERFNMKHAK--PVSTPLGGHFKLSKKSCPSSNKEKENMASIPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFMVNPGKEHWEAVKWIFRY 1384
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Match: A0A2N9H5C1_FAGSY (Integrase catalytic domain-containing protein n=5 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H5C1_FAGSY) HSP 1 Score: 171 bits (433), Expect = 1.800e-42 Identity = 102/297 (34.34%), Postives = 161/297 (54.21%), Query Frame = 1
Query: 1 KVGQNG-RVVKYKCRFVAQGLRQVKGIHYRELSPPTPT*SGIRMTLVVMSLLDWEGRQLNVEMTFLEANVAEEFYVELPNGY--RDSPNQIVRLEKVMYGLMHAGLLWSKKFGGEMLAKGFERSQADPC*FVWKHLGKVVVIIVVYVDDVLVLSETKQEKHQALEDLRFSSHIKDLGEFSYYRGCHITRDRKARTVMFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMRGIPYREAVVALRWVANTARPDLAYIAHTLAKFGDNPGPEHWKAVMKALQY 882
K+ +NG ++VKYK R V QG Q +GI + E+ P S IR+ L + + LD E Q++V+ FL ++ EE Y+ G+ + +++ RL+K +YGL A W KKF M+ +G+ R+ A+ C +V K +I+++YVDD+L++ + ++L S +KDLG G I RDRKA+ + Q++YV+ V ERF ++ P ST +K + + E E M IPY AV +L + RPD+A+ +++F NPG EHW+AV +Y
Sbjct: 727 KLKKNGEKLVKYKARLVVQGFNQKQGIDFDEIFSPVVKMSSIRVILGLTASLDLELEQMDVKTAFLHGDLEEEIYMVQLEGFEAKGKEHKVCRLKKSLYGLKQAPRQWYKKFDSFMVGQGYTRTDANHCVYVRKFPNGKFIILLLYVDDMLIVGQDANMVGSLKKELFKSFDMKDLGPARQILGMQILRDRKAKKLWLSQEKYVERVLERFNMKHAK--PVSTPLGGHFKLSKKSCPSSNKEKENMASIPYSSAVGSLMYAMVCTRPDIAHAVSVVSRFMVNPGKEHWEAVKWIFRY 1021 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig111.1033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig111.1033.1 >prot_F-serratus_M_contig111.1033.1 ID=prot_F-serratus_M_contig111.1033.1|Name=mRNA_F-serratus_M_contig111.1033.1|organism=Fucus serratus male|type=polypeptide|length=103bp MFDQQRYVQTVTERFEIRKVSVIPFSTVRAPLWKANWPQKDAEIAEIEEMback to top mRNA from alignment at F-serratus_M_contig111:146556..147914+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig111.1033.1 ID=mRNA_F-serratus_M_contig111.1033.1|Name=mRNA_F-serratus_M_contig111.1033.1|organism=Fucus serratus male|type=mRNA|length=1359bp|location=Sequence derived from alignment at F-serratus_M_contig111:146556..147914+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig111:146556..147914+ >mRNA_F-serratus_M_contig111.1033.1 ID=mRNA_F-serratus_M_contig111.1033.1|Name=mRNA_F-serratus_M_contig111.1033.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig111:146556..147914+ (Fucus serratus male)back to top |