mRNA_F-serratus_M_contig111.1030.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig111.1030.1
Unique NamemRNA_F-serratus_M_contig111.1030.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 5.150e-59
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 1 
Query:  244 MAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAKGS 579
            MAA+N +HKKILK+AKGYRGRSKSVFKIAIQ+VEKALQQAYRDRKNKKR+FRRLWIERINAGVRQHGM YS+F+N A+KADV+LNRKVLAEMAVTEPYSFRAVVETVKAKGS
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGS 112
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A2S6SBV7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin2 TaxID=2013089 RepID=A0A2S6SBV7_9PROT)

HSP 1 Score: 143 bits (361), Expect = 1.650e-38
Identity = 70/112 (62.50%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:  238 RGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAK 573
            RG+ A + KHKKILKMAKGYRGRSK+VF+IA+QKVEK LQ AYRDR+ KKR+FR LWI++INAG R+HGMSYS FI   KKA+++++RK+LA++A+  P +F+ +VE V+ +
Sbjct:    6 RGVQAKS-KHKKILKMAKGYRGRSKNVFRIAVQKVEKGLQYAYRDRRTKKRNFRALWIQKINAGTREHGMSYSQFIKGMKKAEIEIDRKILADIALNNPITFKFIVEKVRGR 116
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A3B9VH17_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9VH17_9PROT)

HSP 1 Score: 143 bits (360), Expect = 2.050e-38
Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:  238 RGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKA 570
            +G   S  +H KI+KMAKGYRGR+KS F++A++KVEKALQ AYRDR+NKKRDFRRLWI RINA  RQHG+SYS+FIN  K A+++++RKVLA +A+T+  +F A+VE  KA
Sbjct:    5 KGGVTSRRRHNKIIKMAKGYRGRNKSCFRVAVEKVEKALQYAYRDRRNKKRDFRRLWITRINAATRQHGLSYSVFINALKAANIEIDRKVLAHVAMTDAKAFSAIVEKAKA 115
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 142 bits (358), Expect = 4.580e-38
Identity = 65/102 (63.73%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:  262 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 567
            +HKKILKMAKGYRGRSK+VF++AIQ+VEKALQ AYRDR+ KKR+FR LWI+RINAG R+HGMSYS FI+  KKA+++++RK+L+++A+  P +F+++VE ++
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A2S6RR86_9PROT (50S ribosomal protein L20 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6RR86_9PROT)

HSP 1 Score: 141 bits (356), Expect = 7.990e-38
Identity = 68/102 (66.67%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:  262 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 567
            KHKKI+K+AKGYRGRSK+VF+IAI+KVEK LQ AYRDR+ KKR FR LWI+RINAG R+HGMSYS FIN  KKA++D++RK+LAE+A   P +F+ +VE ++
Sbjct:   13 KHKKIIKLAKGYRGRSKNVFRIAIEKVEKGLQYAYRDRRTKKRSFRGLWIQRINAGAREHGMSYSQFINGIKKAEIDIDRKILAEIAKDNPTTFKYLVEKIR 114
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A7S2PGZ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGZ0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.240e-37
Identity = 72/112 (64.29%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:  232 QCRGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 567
            Q RGMA+   KHK+++K AKG+RGR+   FK A+Q++EK+ Q AYRDRK KKR+FR+LWIERINAGVRQHGMSYS FIN +  +  +LNRKVLA+MA  EP+SF+AVV+ VK
Sbjct:   43 QSRGMASK--KHKRVIKQAKGFRGRANRTFKAALQRLEKSWQYAYRDRKQKKRNFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 152
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 140 bits (353), Expect = 2.350e-37
Identity = 66/99 (66.67%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:  262 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVE 558
            +HKK+LK+AKGYRGRSK+ F+IAIQ+VEKALQ AYRDR+N+KRDFR LWI+RINAG R+HG++YS FIN   KA +D++RKVLA++AV EP +F+++V+
Sbjct:   13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK)

HSP 1 Score: 140 bits (352), Expect = 3.110e-37
Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  253 SNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 567
            S  +HKKI+KMAKGYRGR+K+ FKIAI+KVEKALQ AYRDR+N+KRDFR LWI+RINA VRQH M YS F+   KKA ++++RK+LAEMAV +P SF  +VE VK
Sbjct:   10 SKNRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT)

HSP 1 Score: 139 bits (350), Expect = 6.520e-37
Identity = 69/102 (67.65%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:  262 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 567
            +HKKILK+AKGYRGR+K+ F++AI+KVEKAL+ AYRDRK +KRDFR LWI+RINAGVR+HGM YS FIN  K A +DL+RKVLA++AV EP +F  +VE  K
Sbjct:   13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARKRDFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114
[Close]
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Match: A0A4Q7DJH6_9PROT (50S ribosomal protein L20 n=1 Tax=Candidatus Finniella inopinata TaxID=1696036 RepID=A0A4Q7DJH6_9PROT)

HSP 1 Score: 139 bits (349), Expect = 9.730e-37
Identity = 69/108 (63.89%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:  262 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAKGSAA 585
            +HKKI+KMAKGYRGRSK+ F+IA+Q+VEKALQ AYRDR+NKKRDFR LWI+RINA VR+ G++YS+F+N   KA + ++RK +AE+AV EP SF+ +VE VK   +AA
Sbjct:   13 RHKKIIKMAKGYRGRSKNCFRIAVQRVEKALQYAYRDRRNKKRDFRGLWIQRINAAVRELGLTYSVFMNGLIKAGITIDRKAMAELAVNEPASFKVLVEQVKTSMAAA 120
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig111.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI5.150e-5989.2950S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A2S6SBV7_9PROT1.650e-3862.5050S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A3B9VH17_9PROT2.050e-3863.0650S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2S6SQA5_9PROT4.580e-3863.7350S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2S6RR86_9PROT7.990e-3866.6750S ribosomal protein L20 n=3 Tax=Alphaproteobacte... [more]
A0A7S2PGZ0_9STRA2.240e-3764.29Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1M3GWJ7_9PROT2.350e-3766.6750S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2A5BDS7_9RICK3.110e-3767.6250S ribosomal protein L20 n=1 Tax=Rickettsiales ba... [more]
A0A4P5SLS5_9PROT6.520e-3767.6550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A4Q7DJH6_9PROT9.730e-3763.8950S ribosomal protein L20 n=1 Tax=Candidatus Finni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig111contigF-serratus_M_contig111:87267..90044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue1.5e-47
Seed eggNOG ortholog2880.D7G284
Preferred namerpl20
KEGG koko:K02887
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0292@1,KOG4707@2759
Ec32 ortholog description50S ribosomal protein L20
Ec32 orthologEc-16_002100.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size1157
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.0255096-UTR-F-serratus_M_contig111:87266..873141622928992.0255096-UTR-F-serratus_M_contig111:87266..87314Fucus serratus maleUTRF-serratus_M_contig111 87267..87314 +
1690962659.8136969-UTR-F-serratus_M_contig111:87266..873141690962659.8136969-UTR-F-serratus_M_contig111:87266..87314Fucus serratus maleUTRF-serratus_M_contig111 87267..87314 +
1622928992.113058-UTR-F-serratus_M_contig111:89462..898781622928992.113058-UTR-F-serratus_M_contig111:89462..89878Fucus serratus maleUTRF-serratus_M_contig111 89463..89878 +
1690962659.8663547-UTR-F-serratus_M_contig111:89462..898781690962659.8663547-UTR-F-serratus_M_contig111:89462..89878Fucus serratus maleUTRF-serratus_M_contig111 89463..89878 +
1622928992.1311052-UTR-F-serratus_M_contig111:89897..900441622928992.1311052-UTR-F-serratus_M_contig111:89897..90044Fucus serratus maleUTRF-serratus_M_contig111 89898..90044 +
1690962659.874072-UTR-F-serratus_M_contig111:89897..900441690962659.874072-UTR-F-serratus_M_contig111:89897..90044Fucus serratus maleUTRF-serratus_M_contig111 89898..90044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.0431266-CDS-F-serratus_M_contig111:87314..875591622928992.0431266-CDS-F-serratus_M_contig111:87314..87559Fucus serratus maleCDSF-serratus_M_contig111 87315..87559 +
1690962659.8268175-CDS-F-serratus_M_contig111:87314..875591690962659.8268175-CDS-F-serratus_M_contig111:87314..87559Fucus serratus maleCDSF-serratus_M_contig111 87315..87559 +
1622928992.0597048-CDS-F-serratus_M_contig111:88276..883611622928992.0597048-CDS-F-serratus_M_contig111:88276..88361Fucus serratus maleCDSF-serratus_M_contig111 88277..88361 +
1690962659.8360698-CDS-F-serratus_M_contig111:88276..883611690962659.8360698-CDS-F-serratus_M_contig111:88276..88361Fucus serratus maleCDSF-serratus_M_contig111 88277..88361 +
1622928992.0792606-CDS-F-serratus_M_contig111:88988..891141622928992.0792606-CDS-F-serratus_M_contig111:88988..89114Fucus serratus maleCDSF-serratus_M_contig111 88989..89114 +
1690962659.8455367-CDS-F-serratus_M_contig111:88988..891141690962659.8455367-CDS-F-serratus_M_contig111:88988..89114Fucus serratus maleCDSF-serratus_M_contig111 88989..89114 +
1622928992.0966873-CDS-F-serratus_M_contig111:89372..894621622928992.0966873-CDS-F-serratus_M_contig111:89372..89462Fucus serratus maleCDSF-serratus_M_contig111 89373..89462 +
1690962659.8553667-CDS-F-serratus_M_contig111:89372..894621690962659.8553667-CDS-F-serratus_M_contig111:89372..89462Fucus serratus maleCDSF-serratus_M_contig111 89373..89462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig111.1030.1prot_F-serratus_M_contig111.1030.1Fucus serratus malepolypeptideF-serratus_M_contig111 87315..89462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig111.1030.1

>prot_F-serratus_M_contig111.1030.1 ID=prot_F-serratus_M_contig111.1030.1|Name=mRNA_F-serratus_M_contig111.1030.1|organism=Fucus serratus male|type=polypeptide|length=182bp
MSWSSALTRLKPQSLWSCLLKLGVGSATRESSVGGMGAALAGSSSRRSLD
YLFPKGQQSQGQCRGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEK
ALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLN
RKVLAEMAVTEPYSFRAVVETVKAKGSAAKA*
back to top

mRNA from alignment at F-serratus_M_contig111:87267..90044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig111.1030.1 ID=mRNA_F-serratus_M_contig111.1030.1|Name=mRNA_F-serratus_M_contig111.1030.1|organism=Fucus serratus male|type=mRNA|length=2778bp|location=Sequence derived from alignment at F-serratus_M_contig111:87267..90044+ (Fucus serratus male)
GGCAGCCATCAATCGGTCCTTAAACCAGTCTCGGAGGGGCCTACTGCTAT
GTCTTGGTCGTCAGCGCTCACGAGACTAAAGCCTCAGTCATTATGGTCGT
GTCTATTGAAGTTAGGAGTTGGCTCGGCAACGCGAGAATCGTCCGTAGGA
GGGATGGGGGCAGCATTAGCGGGCAGCAGCTCTCGGCGATCGTTGGACTA
TCTCTTTCCCAAAGGGCAACAGAGTCAGGGGCAATGTCGCGGGATGGCCG
CCAGTAATTTCAAGCACAAGAAAATCCTGAAGATGGCGAAGGGGTAAGTT
CTTCATGCCGAGAAGATTCGTTCGCATGGAAAGTCATCTCGGGATCGTGA
ATCGCCTCTCGTAATAGTTTTCGGAAATGATCGCACAACAGTACTACCGC
TGTCGTTCTCTTATGCTATTTTTAGTACTAATATTAGAAAAGGTGCACTA
CGTGACTTGTCAATACGTGTTCTATCAAAGCTGTAAATAGCACTGGTAAA
TATTAATATTATAGTATAACTTGGTTGGCTCTTACAACGAGGACCCAAAC
AGCGTACAGTCATGGGCATAACCAACATAGAAAAGTACACCTTTACCGGC
AACAACTATGAATACGTTCCTGCGATGTAGCACGAGCATGTGCCGTTGAA
ATGGGGAGCTATTGTGTTCGCCAATATCCGTAGGTTGGGCGTTGTGCCCA
TACTCCTCTCCTTTTCATAAAAAGCACAGAAGTCTATTCATACAAGCATA
ATGCTCGAGGAGTCGGAACGCAGAGTGCCTGGGACATTGAAGGCGCGCGT
ACAGCCTCCACGTTCGTGATCGGCGCCCCGTCTCTCAAGATCACGTAGGA
TGGCTCTAGAGGGTCGAACGACCTCAAGCGAGGAGCACCAAGTGTCGTCG
AGCCGAAACACAGTCGCCTCGAGCTCCAGATGTACAACCTGTACACAAGT
ATGTGTGGTACCATTGGGACATTATGCAACCGATCGCGCACGATGTAAAC
GCCCGCACAGGTACCGCGGGAGGAGCAAAAGCGTCTTCAAGATCGCTATA
CAGAAGGTCGAAAAGGCTCTCCAACAGGCCTATCGAGACAGAAAGGTGAT
TCATCCGCATTTTGCGACAACCACAGTGTGGGCCATGGACCACATGCATC
TACTGTGGTACTTTCAACATGCCCACTTCATACTAATAGTGGGTGTGGGA
AAGAGAGGCGTATATTAATTGGTCCATAGTGACCTGCTAAGGCAGCACTC
GTTCGGAACTACCTTGAGGTTTACTGGTCCTGTACCGGTGGACTCTCGGC
AGTGAACGCCATCGGTACATAATTGCGTGACCCGATAAATTCGGGACTGA
CCCGATGGCGTATGGCGGTTTGAAATAAATATATGGACGCCGCCGCGGAA
CTCGGGGGAAATCCCGTAAATAAGCACCAGATTCAGCCTGAGTATGGAAA
TGAGCAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCAAGACCAA
ATTTTCAGGCACGAACGCGGTCAGAGGAATGTTCATTTTCCCTGTTCAGC
TCACCACGAGCAGGATTTTAAACCTTACACGGTTGATCCATACTCTTGCC
TGTATGTGTGTGACCATACATAAGTGTGCTCCCCTCCCTACAAATCTCGA
GCGCAGACTTCCACTTCAATCCTGACCCAAGAAGCCCCGCTTTGGGGGTT
GTGCCTGCTTTTTCTGCCGCAGAACAAGAAGAGGGATTTCCGCAGGCTGT
GGATCGAGCGGATCAACGCTGGGGTTCGTCAGCACGGAATGTCGTACTCG
ATGTTCATAAACCACGCCAAGAAGGCCGACGTCGATCTGAATCGAAAGGT
ACGACGACTCCCCCCCCACTGCGCCCTCCCGATCTTCCCCGATGTCGCAA
CTCTTGCGTGCCGTAAAGACAATCGTCAACGCGCACGTTTCCGCTGCTAT
TTTTTAAGCCGAGCGGTAGATGTGCGGTATCCGCCCGCAGTTAGTGTGAA
TCAATCGCAATGGAAGATTGGGGAGAAGATGCCATGACCTCCATCGTCCC
ATGATAGCGCCTGACAACCCGGTCCCGCATTTCTGGAACCCGACCCTTGC
CGACAGGTTCTCGCGGAAATGGCCGTGACAGAGCCGTACAGCTTCCGCGC
CGTGGTCGAGACGGTTAAGGCCAAGGGATCTGCTGCCAAAGCATAAACGC
AGTTTCACGCCGTGTTAAATAAGAGACGCGTCCAGTCCTGGCCGATGGAG
AGGCATACAACCATAGGTGTGCTCCTCCTCACGCGTGTATTTCCCGTGGC
ACCCGGAAATGGAGTGTGGAGCAACACGCCGGAGAGGATGTTACTGTGCA
CCCTTTGTGAGCGGGAATTGTTTACTGGTGTTTTGGTATTTTGCAGAAAC
GAGTTATAACTACAGTATACCATGGTGTGTTAGAGCGTTACCCAGGTGAA
GATGCGCTTTTCCTGAGTGATGATGGGAGCGTATGAAAACTCGTGGTGAT
TTCAAAAAAACGTTGTGTTCTGCTCGCTGAGTTCATGTGATGCTTTCTTA
TCACCCCGAGCGCCGACTGGTCAGTAATCGACTCGAGGCTTGTTGTTTAA
AACGAACTGTCGGCGTGTTGAGAACCGTCAGGAAATaccCCTTCGAAAAC
TGACTATTAAATAGAAGGATTGTGTCTCCGAGCTCCAGCCAAAGACCTAT
CCTGAACTTTCCGGGGGGAATGCTCGCGTCTGAATCCATAACGCGTACGG
GAAACGACAAACGACGAAAAACTGTCAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig111:87267..90044+

>mRNA_F-serratus_M_contig111.1030.1 ID=mRNA_F-serratus_M_contig111.1030.1|Name=mRNA_F-serratus_M_contig111.1030.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig111:87267..90044+ (Fucus serratus male)
ATGTCTTGGTCGTCAGCGCTCACGAGACTAAAGCCTCAGTCATTATGGTC
GTGTCTATTGAAGTTAGGAGTTGGCTCGGCAACGCGAGAATCGTCCGTAG
GAGGGATGGGGGCAGCATTAGCGGGCAGCAGCTCTCGGCGATCGTTGGAC
TATCTCTTTCCCAAAGGGCAACAGAGTCAGGGGCAATGTCGCGGGATGGC
CGCCAGTAATTTCAAGCACAAGAAAATCCTGAAGATGGCGAAGGGATGTC
TTGGTCGTCAGCGCTCACGAGACTAAAGCCTCAGTCATTATGGTCGTGTC
TATTGAAGTTAGGAGTTGGCTCGGCAACGCGAGAATCGTCCGTAGGAGGG
ATGGGGGCAGCATTAGCGGGCAGCAGCTCTCGGCGATCGTTGGACTATCT
CTTTCCCAAAGGGCAACAGAGTCAGGGGCAATGTCGCGGGATGGCCGCCA
GTAATTTCAAGCACAAGAAAATCCTGAAGATGGCGAAGGGGTACCGCGGG
AGGAGCAAAAGCGTCTTCAAGATCGCTATACAGAAGGTCGAAAAGGCTCT
CCAACAGGCCTATCGAGACAGAAAGGTACCGCGGGAGGAGCAAAAGCGTC
TTCAAGATCGCTATACAGAAGGTCGAAAAGGCTCTCCAACAGGCCTATCG
AGACAGAAAGAACAAGAAGAGGGATTTCCGCAGGCTGTGGATCGAGCGGA
TCAACGCTGGGGTTCGTCAGCACGGAATGTCGTACTCGATGTTCATAAAC
CACGCCAAGAAGGCCGACGTCGATCTGAATCGAAAGAACAAGAAGAGGGA
TTTCCGCAGGCTGTGGATCGAGCGGATCAACGCTGGGGTTCGTCAGCACG
GAATGTCGTACTCGATGTTCATAAACCACGCCAAGAAGGCCGACGTCGAT
CTGAATCGAAAGGTTCTCGCGGAAATGGCCGTGACAGAGCCGTACAGCTT
CCGCGCCGTGGTCGAGACGGTTAAGGCCAAGGGATCTGCTGCCAAAGCAT
AAGTTCTCGCGGAAATGGCCGTGACAGAGCCGTACAGCTTCCGCGCCGTG
GTCGAGACGGTTAAGGCCAAGGGATCTGCTGCCAAAGCATAA
back to top