mRNA_F-serratus_M_contig1109.1016.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1109.1016.1
Unique NamemRNA_F-serratus_M_contig1109.1016.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1109.1016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1109contigF-serratus_M_contig1109:33906..34311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.8397715-CDS-F-serratus_M_contig1109:33905..342291622928987.8397715-CDS-F-serratus_M_contig1109:33905..34229Fucus serratus maleCDSF-serratus_M_contig1109 33906..34229 +
1690962657.8677344-CDS-F-serratus_M_contig1109:33905..342291690962657.8677344-CDS-F-serratus_M_contig1109:33905..34229Fucus serratus maleCDSF-serratus_M_contig1109 33906..34229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.8539376-UTR-F-serratus_M_contig1109:34229..343111622928987.8539376-UTR-F-serratus_M_contig1109:34229..34311Fucus serratus maleUTRF-serratus_M_contig1109 34230..34311 +
1690962657.8756247-UTR-F-serratus_M_contig1109:34229..343111690962657.8756247-UTR-F-serratus_M_contig1109:34229..34311Fucus serratus maleUTRF-serratus_M_contig1109 34230..34311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1109.1016.1prot_F-serratus_M_contig1109.1016.1Fucus serratus malepolypeptideF-serratus_M_contig1109 33906..34229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1109.1016.1

>prot_F-serratus_M_contig1109.1016.1 ID=prot_F-serratus_M_contig1109.1016.1|Name=mRNA_F-serratus_M_contig1109.1016.1|organism=Fucus serratus male|type=polypeptide|length=108bp
GDGNGDEGNGNGKEGRIREGGRETKKRKKPTNSCRRRVENGKHFDGNRKR
CRKERVGPVAANTGDVESNKEAGGGARGSLGSSKNCTSRESVSPLSRLMR
GFRIKLH*
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mRNA from alignment at F-serratus_M_contig1109:33906..34311+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1109.1016.1 ID=mRNA_F-serratus_M_contig1109.1016.1|Name=mRNA_F-serratus_M_contig1109.1016.1|organism=Fucus serratus male|type=mRNA|length=406bp|location=Sequence derived from alignment at F-serratus_M_contig1109:33906..34311+ (Fucus serratus male)
GGAGATGGAAACGGGGACGAGGGGAACGGGAACGGAAAAGAGGGTAGGAT
CAGGGAGGGCGGAAGAGAGACTAAGAAGCGGAAGAAACCGACAAATAGCT
GTAGACGCCGAGTGGAAAACGGGAAACACTTCGATGGAAATAGGAAAAGG
TGTAGAAAAGAAAGGGTTGGTCCAGTAGCTGCCAATACAGGTGATGTAGA
GAGTAACAAGGAAGCAGGGGGGGGAGCACGAGGTAGTCTGGGCTCAAGTA
AGAATTGTACAAGTAGAGAGAGTGTGTCCCCTTTGTCGCGTCTGATGAGA
GGTTTTCGTATTAAGCTTCATTGATCCCCTCTTGGGAGGATCAATACGAG
TGGCATAGAATGAATAGGATGACAGTACCGGATTGCACGGTTGTGTGCAA
TTTAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1109:33906..34311+

>mRNA_F-serratus_M_contig1109.1016.1 ID=mRNA_F-serratus_M_contig1109.1016.1|Name=mRNA_F-serratus_M_contig1109.1016.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1109:33906..34311+ (Fucus serratus male)
GGAGATGGAAACGGGGACGAGGGGAACGGGAACGGAAAAGAGGGTAGGAT
CAGGGAGGGCGGAAGAGAGACTAAGAAGCGGAAGAAACCGACAAATAGCT
GTAGACGCCGAGTGGAAAACGGGAAACACTTCGATGGAAATAGGAAAAGG
TGTAGAAAAGAAAGGGTTGGTCCAGTAGCTGCCAATACAGGTGATGTAGA
GAGTAACAAGGAAGCAGGGGGGGGAGCACGAGGTAGTCTGGGCTCAAGTA
AGAATTGTACAAGTAGAGAGAGTGTGTCCCCTTTGTCGCGTCTGATGAGA
GGTTTTCGTATTAAGCTTCATTGAGGAGATGGAAACGGGGACGAGGGGAA
CGGGAACGGAAAAGAGGGTAGGATCAGGGAGGGCGGAAGAGAGACTAAGA
AGCGGAAGAAACCGACAAATAGCTGTAGACGCCGAGTGGAAAACGGGAAA
CACTTCGATGGAAATAGGAAAAGGTGTAGAAAAGAAAGGGTTGGTCCAGT
AGCTGCCAATACAGGTGATGTAGAGAGTAACAAGGAAGCAGGGGGGGGAG
CACGAGGTAGTCTGGGCTCAAGTAAGAATTGTACAAGTAGAGAGAGTGTG
TCCCCTTTGTCGCGTCTGATGAGAGGTTTTCGTATTAAGCTTCATTGA
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