mRNA_F-serratus_M_contig1107.1010.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1107.1010.1 vs. uniprot
Match: A0A6H5JG15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG15_9PHAE) HSP 1 Score: 343 bits (880), Expect = 3.830e-94 Identity = 312/691 (45.15%), Postives = 361/691 (52.24%), Query Frame = 2
Query: 1103 VADLEGQVSVMEDELDLRGRRGGGMETPXXXXXXXXXXXXXXTSSVPERA----------YEIEAVGPGD-----------------SDGAEG----DSGAGTVEDGPLLSPRGRGYLARLVLEVCSEIEEGKKKAAVAKS---AVTNSAA------------IPKSERLCKVLPKVMEAAIRGVKDLDEQVFEQMMQTASERTPQHAPHPLPQQAPPS-----LGTPARRLSSCVVARDGSTEFFAQSPAPSGRHSFFRGMN-------GGGGSCRSSNTRSTAANEVPRPTSMKESSFGGKGMLGRGGRGAEAPVPQSLASNASASAANSQGGATERPAKHV------GFLGAGDWITKAFTPRGGXXXXXXXXXXXXXXXAFETDISSILSSPRAPTTS---------------NKGDSSSVLTPAQSQET------QDMLSFEGSTEEVLRYTIVAKSYLIRSRSKRREDGSS--------SPGGVPRSPRVSRQALEGDNDDVRDATKELLDLKNRYMSATQHWLKTDIVSDEELRTIRAQVFEAIQRKRSELHREAAAVLRAERAIEV-----RRGTSQSPKRRGARPTTPKRDRPPGDRGASASSRXXXXXXXXXX--------------------------------AARTISMLSGTAELLRFSRLLLLLSEAISVSSSAGS 2785
VADLEGQVSVMEDELD RG + ++V A ++EA G S G EG ++GAG V DGPLLSPRGRGYLARLVLEVCSEIE+ KK A AK+ A TN+ + IP SERLCKVLPKVME AIRGVKDLDEQVFEQMM+TASER+ + +P LGTPARRLSSCVVARDG EFFAQSPAP SFFR M G G + R +++ S+ + +V R S +++ K + G G +G +A A+A+AA A E P K GF GAGDW+ AFTPRG A D S PRAP + K + + L PAQ + D LSFEGSTEEVLRYTIVAKSYLIRS+SK+ + SPGG R + EG +DVR T+ELLDLK+RYM++TQHWLKTDIV+DEELR IRAQVFEAIQRKRSELH EAAAVLRAE +E G S S RG GD XXXXXXXXXX A RTI+ML GTAE L+FSRLLLLLSEAISVS+S S
Sbjct: 475 VADLEGQVSVMEDELDRRGVARPMIADANSSSNTESCRTGNAGTAVVASAGDNSNASPCRVKVEATGAAKTVKAAAAXXXXXXXSPKSRGVEGQGGGEAGAGMVNDGPLLSPRGRGYLARLVLEVCSEIEDSKKAATEAKAKGGASTNTVSTRGEGITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGMSMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLMGEPKTPARGDGSALRRTSSGSSGSIKVVRTASPWDATPMKKILTG-GKQGKKA---------AAAAAATPHRNARETPLKTPRSGGAGGFFGAGDWLAAAFTPRG----------------ALAPDPES----PRAPASEVPKQXXXXXXXXXXVEKDEGIAPLAPAQPISSFRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTER------RVEEGGEEDVRHLTQELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESVLEESLRLQHSGGSNSKSSRGC-----------GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEANRTIAMLEGTAEFLKFSRLLLLLSEAISVSNSVTS 1118
BLAST of mRNA_F-serratus_M_contig1107.1010.1 vs. uniprot
Match: D7G4K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K0_ECTSI) HSP 1 Score: 288 bits (738), Expect = 1.540e-77 Identity = 276/659 (41.88%), Postives = 314/659 (47.65%), Query Frame = 2
Query: 1103 VADLEGQVSVMEDELDLRGRRGGGMETPXXXXXXXXXXXXXXTSSVPERA----------YEIEAVGPGD----------------SDGAEGD----SGAGTVEDGPLLSPRGRGYLARLVLEVCSEIEEGKKKAAVAK------------------SAVTNSAAIPKSERLCKVLPKVMEAAIRGVKDLDEQVFEQMMQTASERTPQHAPHPLPQQAPPS-----LGTPARRLSSCVVARDGSTEFFAQSPAPSGRHSFFRGMN-------GGGGSCRSSNTRSTAANEVPRPTSMKESSFGGKGMLGRGGRGAEAPVPQSLASNASASAANSQGGATERPAKHVGFLGAGDWITKAFTPRGGXXXXXXXXXXXXXXXAFETDISSILSSPRAPTTSNKGDSSSVLTPAQSQETQDMLSFEGSTEEVLRYTIVAKSYLIRSRSKRREDGSS--------SPGGVPRSPRVSRQALEGDNDDVRDATKELLDLKNRYMSATQHWLKTDIVSDEELRTIRAQVFEAIQRKRSELHREAAAVLRAERAIEV-----RRGTSQSPKRRGARP-------------------------TTPKRDRPPGDRGASASSRXXXXXXXXXXAARTISMLSGTAELLRFSRLLLLLSEAISVSSSAGS 2785
VADLEGQVSVMEDELD RG P ++V A ++EA G S G EG+ +GAG V DGPLLSPRGRGYLARLVLEVCSEIE+ KK A AK + +IP SERLCKVLPKVME AIRGVKDLDEQVFEQMM+TASER A +P LGTPARRLSSCVVARDG EFFAQSPAP SFFR + G G + R T S ++ +V R S +++ K G G G +A A T R GF GAGDW+ AFTPRG A + D RAP G T SYLIRS+SK+ + SPGG R + EG +DVR TKELLDLK+RYM++TQHWLKTDIV+ EELR IRAQVFEAIQRKRSELH EAAAVLRAE +E G S S RG +T +D XXXX A RTI+ML+GTAE L+FSRLLLLLSEAISVS+S S
Sbjct: 263 VADLEGQVSVMEDELDRRGVARPMPADPNSSSNAESCRTGNAGTAVVASADDKSNASACRVKVEATGAAKTVKAAXXXXXXXXXPKSRGVEGEGGGEAGAGIVNDGPLLSPRGRGYLARLVLEVCSEIEDSKKAATEAKXXXXXXXXXXXXXXXXGEGIASRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLVGEPKTPARGDGSALR--RTSSGSSIKVVRTASAWDATPMIKMFTG-GKPGKKAXXXXXXXXATPHKNARETPLRTPRSGGAGGFFGAGDWLAAAFTPRGAL--------------APDPD--------RAPPRRFFG------------------------------TPSLPSYLIRSKSKKHGESREASPIKSLFSPGGTER------KVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVNHEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESRLEESLRIQHSGGSNSKSSRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGKDE---XXXXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVSNSVTS 857 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1107.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1107.1010.1 >prot_F-serratus_M_contig1107.1010.1 ID=prot_F-serratus_M_contig1107.1010.1|Name=mRNA_F-serratus_M_contig1107.1010.1|organism=Fucus serratus male|type=polypeptide|length=920bp MQHASHGDFPRATLTTPRAVAAAASAVNSVNAASSTANGWGRSMRSFSAGback to top mRNA from alignment at F-serratus_M_contig1107:156629..208697+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1107.1010.1 ID=mRNA_F-serratus_M_contig1107.1010.1|Name=mRNA_F-serratus_M_contig1107.1010.1|organism=Fucus serratus male|type=mRNA|length=52069bp|location=Sequence derived from alignment at F-serratus_M_contig1107:156629..208697+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1107:156629..208697+ >mRNA_F-serratus_M_contig1107.1010.1 ID=mRNA_F-serratus_M_contig1107.1010.1|Name=mRNA_F-serratus_M_contig1107.1010.1|organism=Fucus serratus male|type=CDS|length=5520bp|location=Sequence derived from alignment at F-serratus_M_contig1107:156629..208697+ (Fucus serratus male)back to top |