mRNA_F-serratus_M_contig1107.1009.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1107.1009.1
Unique NamemRNA_F-serratus_M_contig1107.1009.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1107.1009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1107contigF-serratus_M_contig1107:153054..156474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size850
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1107.1009.1prot_F-serratus_M_contig1107.1009.1Fucus serratus malepolypeptideF-serratus_M_contig1107 155812..156474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.0880425-UTR-F-serratus_M_contig1107:153053..1531801622928985.0880425-UTR-F-serratus_M_contig1107:153053..153180Fucus serratus maleUTRF-serratus_M_contig1107 153054..153180 +
1690962656.499309-UTR-F-serratus_M_contig1107:153053..1531801690962656.499309-UTR-F-serratus_M_contig1107:153053..153180Fucus serratus maleUTRF-serratus_M_contig1107 153054..153180 +
1622928985.106033-UTR-F-serratus_M_contig1107:155752..1558111622928985.106033-UTR-F-serratus_M_contig1107:155752..155811Fucus serratus maleUTRF-serratus_M_contig1107 155753..155811 +
1690962656.5102751-UTR-F-serratus_M_contig1107:155752..1558111690962656.5102751-UTR-F-serratus_M_contig1107:155752..155811Fucus serratus maleUTRF-serratus_M_contig1107 155753..155811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.123508-CDS-F-serratus_M_contig1107:155811..1564741622928985.123508-CDS-F-serratus_M_contig1107:155811..156474Fucus serratus maleCDSF-serratus_M_contig1107 155812..156474 +
1690962656.5240784-CDS-F-serratus_M_contig1107:155811..1564741690962656.5240784-CDS-F-serratus_M_contig1107:155811..156474Fucus serratus maleCDSF-serratus_M_contig1107 155812..156474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1107.1009.1

>prot_F-serratus_M_contig1107.1009.1 ID=prot_F-serratus_M_contig1107.1009.1|Name=mRNA_F-serratus_M_contig1107.1009.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MVFLSVSPTGAAGPPSPAAESEADEQRIRDTDARLPAGIINSSSSSNPTP
TPSPSNPTNRLQQRHFMRFYGHQRQEDASPRAASNPRAATSSPAPSKLNP
AHGWNEKSASSLLLSSSICAVTIDDRGPDMGGGPGGGGSPPRGGMGVRVG
ASGIRSGSSSSSRNRGARGAGDGLPGRVDRGESRIGLGLLEEVQEGGAVG
LVAGGGYNGGTAPEGAQEEEG
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mRNA from alignment at F-serratus_M_contig1107:153054..156474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1107.1009.1 ID=mRNA_F-serratus_M_contig1107.1009.1|Name=mRNA_F-serratus_M_contig1107.1009.1|organism=Fucus serratus male|type=mRNA|length=3421bp|location=Sequence derived from alignment at F-serratus_M_contig1107:153054..156474+ (Fucus serratus male)
ATAGGCGTGCCCAGGACGCAAACAACCCTGCGTAGACGAAAGCCACAGGA
AGGATAAGGGTTGCGGCTTTCCGCATTTTGGCATTCAGCGGCGTGACAGA
TTATTTGTGGTCGGTTCCGATTAACCGGTGAGTATGTGACCTGCCCGAGA
ACCTTCCGTTGGGGTTGATTGATACCTGTATGTAGTGAGGTTTTTGAAGA
CTTCGAGACGTGTTTTTGGCCCTTGTCGTTGCCCAGTGATTCACTAACAG
GACAAAGCACTCTCCCTGTCGAGACAAGAAGGTGGTAGACACTTTTCTCG
ACCGCCCTTTGCAGAAGGGGAACGGGATGCGAGTATTGAAAATGACTCCC
TATTTTCCCTTGCTGTGCCCCAAGAGCAACAGTTTGTGCAAGTTCTTGTC
GGCGGGCATTTTGACGACCGACCACCGTATGTGGTCTGTAATTTACAACA
CCACAGGTAAGGTAGTCTGTCCTGTGTGATCTTCATTTGTGTGTGTCAAA
ACCGGAACTTCGTCGTTATAGTCTACACAACGACTACAGTAGTACCACAG
GCTGCAGACTGTTGTGAATGTGGTCAGACTCCAAGACAGCACGTATGCCC
AGTCCAGATAAGCTATACATCATACTAGTATTACTGGTTTGTGAGCCAAA
GGGGACTATTCTTGCTATACTACTAAAAAAATATCAAATCAAAGAACTAA
CCCCCGTACAGGTTTCCGTACGTGAGTTGCTGACTAGTAACCGGCCTTCG
TTAAAGATTTCTGAGGAAGCCAAGGGACCCTCCAGGCCCGTCAAGAAGTA
ATGGCAGACCCATCGATCGATCGAATCAGTCCACGACTGGTTCTGTTGCC
CCCCTTCATGTATGTAGCGCCCGGACTTTGCACGACTGCTCCGCACTATT
GTTATTAATAGTTCATATTATCTGTCCGTACGCGGAGTGCCGGCGACCTG
TCCCTCAAGTGATTGTTCACACCTGTTGGCTGCTACCAGGTACTATGTAC
TACTGTGTAGAGCCTATACATGTGCTGCGACGCCGAATTTTAGCTGCTGT
ACAGCACTTGTATGTCATTTTCCTTTTAGGTGTCGACGAACACCTCCAAC
TCTACTAGACTACCTGGCGGTTTAAAAGAAAAAAACTGAACGTATCTATG
TTCTCAACGCTTGAATGTCCGCTGCCGCCCCCAGTGACTGGTGGGGGGTG
TGCTTAGCGACTCGCGTACGAGTCGGCGTACGGTACCGGCAGTCGTGTGG
TCTTGACACTTGGGTATGTCTTGCTTGCTTATTTATTTGTCTCTCGGATA
TGCGCGGCGGTTATTTGCTCTTGTCTTATTTTTTtttcTCCTCCCCTCCG
ATCAGATCGACGGGGGGGGGGGGGGGGGGCTTCTCATCTGTTATTTTTTT
CCTCTCTTTCTCTTTGATTTGTTTTTTGGATGTAGCAATATTAATGGTAC
ATATGGAAAGGGAAGCCTGCGTCTTTGACCACGGGCTCGAGAGATCGGAC
TTATGTGCGGAAATAATAATAACAATAATAATCTAATAATAGACCTTCTG
AGTTGCTGTTTAAAGAAAAATGTTATGTAGGGCTCATGCTGTCGTTCTTG
TTTTCAAGGAAAAACACCTTCAACCTCAGTATTACTATTATAGTAATAGT
ACAACAGAGTACCGGTAACTTTCTCCTGTACAACAAACAATACACTCGAA
ACTCCCGTAATTAGAACAACCGTACATACTTGTAGAACATATAATGACTA
CTATTATAATATTATAGGATGACAGGGCCGGATTGCCCGGTTGTGTGCAA
CATTATGAATACATACATACACACACCCCTTTGCCGCATCAGATCAGAGG
TTTTCGTAATAAGTATCATTGATCCCACCCCCCTTGGGAGGATTAATGCG
AGTGGCATAGAATGAGTAGGATGACAGGGCCGGATTACGCGGTTGTGTGC
AATTCAACAAGTACACACACACCGGTACAAATAATGACTTACCTGGTATC
TATTACTTCGTATATAGGATTACAGGCCCGCGGTTTTTGCAAGGCTGTGT
AGGAGCAGAGCTCTTGATACGTTCAAGTACTGGTACTGAACTGATTTAAA
TATAGTTCACATGCATGTAAATCCTTCGTAGAAAAATTATTCCCCACCAT
GAGTGTTCGAGTTACAATCGTAAAGTCGATGCGCACTCCGAATAATCTGA
TCTCGTTTTTGTACTGGTATGCTCGTAGCGCTCAGTTCTGCGCAGCAATA
TTTCGGTACTATGGTTTCAAGAACGGGTTTCTCCCGTTTTTACCACCTAC
AGCACAGGAGATTTAGGCGTTGTTAAAAAAAGTGTGCCGCATTGCCGTCT
ACAGTAGTCTATTAACAGTATGTGTAGTTGTGTACCAGGTATCTCGTTAC
GTTGAACAAGCAAATGTACCGACGATCTCTCCACCCCGTTACCCATCAGA
CAACACGCAGTGTGATTTGCGTATGTGTGTGTCTGTGTGTGCGTGTGTGT
GTTGTGGTCATTACTTCGAGCAAATTTTGGGCGGCTCCAACCGCGCACTC
GTAGGGTTGGCTATATTTCTTGTGAGTCATCTGAACCGCATGCTAACACG
GTACGTGAAATACGCTTCTGATTTGTTCCGTCTCTCGTTCCCTCCCTTGA
CCTCTACCGAACCCGTCTCGCCCATCCCCCCTTCCCGACCGACCTGAAGA
CCAGCAACTAACTACCCACGGCTTCTGGTCCACGGGAAGCCGCTCGTAGA
CACGGTCGATGGTCTTCCTGTCCGTTTCGCCGACGGGCGCGGCTGGACCT
CCATCCCCGGCGGCCGAGAGCGAAGCAGACGAACAGAGAATCAGGGACAC
GGACGCGCGCCTGCCTGCTGGTATTATCAATAGCAGCAGCAGCAGCAACC
CCACCCCGACACCGTCGCCCTCGAATCCGACAAACCGTCTTCAGCAACGC
CACTTCATGAGATTCTACGGTCACCAACGACAGGAGGACGCCTCACCGCG
AGCCGCCAGCAATCCTCGCGCCGCCACGTCGTCCCCTGCGCCCTCTAAGC
TCAACCCCGCACACGGCTGGAACGAGAAGTCCGCATCTTCTCTGCTGCTC
TCCTCCTCGATTTGTGCCGTGACTATCGATGACCGGGGCCCGGACATGGG
GGGCGGGCCGGGGGGGGGAGGGTCGCCCCCCCGCGGCGGCATGGGCGTTA
GAGTGGGCGCCTCTGGCATTCGCAGTGGCAGCAGCAGCAGCAGTCGCAAT
CGCGGCGCGCGAGGGGCTGGCGACGGTCTGCCCGGTAGAGTCGACCGAGG
GGAGTCGAGGATTGGTCTCGGGTTGCTAGAGGAGGTGCAGGAGGGAGGCG
CGGTCGGCCTTGTCGCCGGAGGAGGGTACAATGGCGGCACCGCGCCGGAG
GGAGCACAAGAAGAGGAAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1107:153054..156474+

>mRNA_F-serratus_M_contig1107.1009.1 ID=mRNA_F-serratus_M_contig1107.1009.1|Name=mRNA_F-serratus_M_contig1107.1009.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig1107:153054..156474+ (Fucus serratus male)
ATGGTCTTCCTGTCCGTTTCGCCGACGGGCGCGGCTGGACCTCCATCCCC
GGCGGCCGAGAGCGAAGCAGACGAACAGAGAATCAGGGACACGGACGCGC
GCCTGCCTGCTGGTATTATCAATAGCAGCAGCAGCAGCAACCCCACCCCG
ACACCGTCGCCCTCGAATCCGACAAACCGTCTTCAGCAACGCCACTTCAT
GAGATTCTACGGTCACCAACGACAGGAGGACGCCTCACCGCGAGCCGCCA
GCAATCCTCGCGCCGCCACGTCGTCCCCTGCGCCCTCTAAGCTCAACCCC
GCACACGGCTGGAACGAGAAGTCCGCATCTTCTCTGCTGCTCTCCTCCTC
GATTTGTGCCGTGACTATCGATGACCGGGGCCCGGACATGGGGGGCGGGC
CGGGGGGGGGAGGGTCGCCCCCCCGCGGCGGCATGGGCGTTAGAGTGGGC
GCCTCTGGCATTCGCAGTGGCAGCAGCAGCAGCAGTCGCAATCGCGGCGC
GCGAGGGGCTGGCGACGGTCTGCCCGGTAGAGTCGACCGAGGGGAGTCGA
GGATTGGTCTCGGGTTGCTAGAGGAGGTGCAGGAGGGAGGCGCGGTCGGC
CTTGTCGCCGGAGGAGGGTACAATGGCGGCACCGCGCCGGAGGGAGCACA
AGAAGAGGAAGGCATGGTCTTCCTGTCCGTTTCGCCGACGGGCGCGGCTG
GACCTCCATCCCCGGCGGCCGAGAGCGAAGCAGACGAACAGAGAATCAGG
GACACGGACGCGCGCCTGCCTGCTGGTATTATCAATAGCAGCAGCAGCAG
CAACCCCACCCCGACACCGTCGCCCTCGAATCCGACAAACCGTCTTCAGC
AACGCCACTTCATGAGATTCTACGGTCACCAACGACAGGAGGACGCCTCA
CCGCGAGCCGCCAGCAATCCTCGCGCCGCCACGTCGTCCCCTGCGCCCTC
TAAGCTCAACCCCGCACACGGCTGGAACGAGAAGTCCGCATCTTCTCTGC
TGCTCTCCTCCTCGATTTGTGCCGTGACTATCGATGACCGGGGCCCGGAC
ATGGGGGGCGGGCCGGGGGGGGGAGGGTCGCCCCCCCGCGGCGGCATGGG
CGTTAGAGTGGGCGCCTCTGGCATTCGCAGTGGCAGCAGCAGCAGCAGTC
GCAATCGCGGCGCGCGAGGGGCTGGCGACGGTCTGCCCGGTAGAGTCGAC
CGAGGGGAGTCGAGGATTGGTCTCGGGTTGCTAGAGGAGGTGCAGGAGGG
AGGCGCGGTCGGCCTTGTCGCCGGAGGAGGGTACAATGGCGGCACCGCGC
CGGAGGGAGCACAAGAAGAGGAAGGC
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