mRNA_F-serratus_M_contig1105.984.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1105.984.1
Unique NamemRNA_F-serratus_M_contig1105.984.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: D8LJS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS4_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 8.480e-73
Identity = 137/208 (65.87%), Postives = 154/208 (74.04%), Query Frame = 2
Query:  386 MVTMKAFLFQTLVGLSIVRGISAFVVTGG---------SSRSRCRTPPGRPVRSYIAKQQHQQQQQTWLAMSADST-EEEMSALDKALVAWGVKSPPGEPEIDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGFLNRGGGETAAVAED 979
            M  MK+ LF     L ++   +AFV+            SS + C T PGR  RS            T + MSA S  EEEM++LDKALVAWGVKSPPGEPEID K+KIKSAGLAGALAYGGTELAFW+ISVPLAVVGYHQTTG+WLDLTTLEGKE+LFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKG LN+   E +A A++
Sbjct:    1 MAAMKSVLFLASTALVLLNSSTAFVLPAARVGQRTPARSSPALC-TAPGRATRSV-----------TRVHMSAGSADEEEMNSLDKALVAWGVKSPPGEPEIDFKEKIKSAGLAGALAYGGTELAFWIISVPLAVVGYHQTTGEWLDLTTLEGKEKLFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGLLNKN--EASADADE 194          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A7S2USK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.780e-35
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 2
Query:  593 EMSALDKALVAWGVKSPPGEPEIDLK---DKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGFLNR 946
            E+S  D  LV  G K  P E E +     +K+KSAGLAGAL+YG  EL FWV+S PLA++ YHQTTG+W DL++ EGK ++  LT GFLTFARL VP RIA ALALTPAMDKYVV+ + ++
Sbjct:   81 ELSGWDNFLVGMGFKEDPNEDEENKMTPIEKVKSAGLAGALSYGAFELLFWVVSTPLAILAYHQTTGEWPDLSSAEGKGKVLALTTGFLTFARLAVPFRIATALALTPAMDKYVVQKYFSK 201          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A7S2SU83_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU83_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.100e-23
Identity = 64/128 (50.00%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  593 EMSALDKALVAWGVKSPPGEPE---IDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGFLNRGGGETAA 967
            E+S LD+ L+  GVK  P  PE   +D   KIKSAG AG  AY  TE AFWVIS+PLA+     +TG   DL+T EG+  +FG + GFL  ARL+VP R+ALALALTP +D+ ++  F      ET A
Sbjct:   87 EVSGLDEWLIGIGVKQDPRIPEEEQVDTMTKIKSAGKAGLAAYAITEGAFWVISIPLAIGAVTASTGTLPDLSTNEGRIAVFGYSFGFLNIARLLVPFRVALALALTPWVDQNIMSRFGGDNEDETTA 214          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: W7T0Q7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0Q7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.780e-22
Identity = 51/120 (42.50%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  599 SALDKALVAWGVKSPPGEPEID---LKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGFLNRG 949
            +A+   LV  G +  P E + D   L+++++  GLAG  +Y  +E+ FW IS+P+ +V +HQ+TG+WLDL+T +G+ ++   +AGFLTFAR+ +PLR  +A AL PA++KYV++  + RG
Sbjct:   93 NAITSLLVRLGYQ--PEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARG 210          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A8J2X2M9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2M9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.070e-22
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  596 MSALDKALVAWGVKSPPGEPE---IDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGF 937
            +S LD+ L+ WG+K  P  PE   +D   +IK AG AG  AY  TE AFW+ SVPLA+     TTG   D  T EGKE + G    F+ FAR++VPLRIALALAL P  ++ +++ F
Sbjct:   43 VSQLDEVLIQWGIKDDPRVPEECRVDPMTRIKEAGKAGVAAYTLTEFAFWLGSVPLAIALVAYTTGSLPDFATTEGKEAVAGYVFVFINFARVIVPLRIALALALAPWCERNIIEKF 159          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A7S2CSF4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSF4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.100e-21
Identity = 64/155 (41.29%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  506 RPVRSYIAKQQHQQQQQTWLAMSADSTEE--------EMSALDKALVAWGVKSPPGEPE---IDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGF 937
            RP  S+I+  +     QT ++ + + T+E        E+S  D+ L+ +GVK  P  PE   +D   K+K+AG AG ++Y  TELAFWVISVPLA+      TG   DL + EG+        GFLTFAR +VP+RIALALA  P +D+ ++  F
Sbjct:   45 RPYASWISSPKKVVLHQTSISEAEEGTDENAVQIIDVEVSDFDEFLIKYGVKDDPRIPEDCRVDTMTKVKNAGTAGIVSYALTELAFWVISVPLAIASVAAATGSLPDLGSQEGQAATGAYILGFLTFARAIVPVRIALALAGVPWVDENIMIRF 199          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A7S4E7C2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.670e-19
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  566 AMSADSTEEEMSALDKALVAWGVKSPPGEPE---IDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVK 931
            A  A++ + E+S  D+ L+ WG K  P  PE   +D   +IK +G AG +AY  TE  FWV SVP A+   +  TG+  D TT EGK  L G     + FARL+VP RIALALA  P +D+ +VK
Sbjct:  142 AALAETIDAEVSDFDEVLIKWGFKEDPRIPEECRVDQMTRIKDSGQAGVIAYAITEAGFWVGSVPFALGAAYVATGEIPDWTTEEGKTALGGYAFVLINFARLIVPARIALALAFAPWVDENIVK 266          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A4D9CMH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMH7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.780e-18
Identity = 44/98 (44.90%), Postives = 72/98 (73.47%), Query Frame = 2
Query:  644 PGEPEID---LKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVV 928
            P E + D   L+++++  GLAG  +Y  +E+ FW IS+P+ +V +HQ+TG+WLDL+T +G+ ++   +AGFLTFAR+ +PLR  +A AL PA++KY++
Sbjct:    3 PEENDADPRSLRERLQDFGLAGIASYIASEVLFWFISLPIGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYLL 100          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A0G4GD47_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GD47_VITBC)

HSP 1 Score: 91.3 bits (225), Expect = 8.590e-16
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  665 LKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVKGFLNRGGGETAAVAED 979
            L +KIK AG+AG ++YG TE+AFW+ S+PLA+  +  T G   D+   E   ++   +AGFL+ AR +VPLRIA ALALTP + KY+      +G  ++ AVA D
Sbjct:   87 LTEKIKEAGVAGVISYGATEVAFWLTSLPLAIAAFLATFGAIPDMANGEDAAKVAVYSAGFLSIARALVPLRIAAALALTPLVGKYIKAAQTEKGADDSRAVAAD 191          
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Match: A0A7S3ZUG5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUG5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.000e-15
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  644 PGEPEIDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTTGDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVK 931
            P E  +D   +IK +G AG +AY  TE  FWV SVP A+   +  TG+  D TT EGK  L G     + FARL+VP RIALALA  P +D+ +VK
Sbjct:   41 PEECRVDQMTRIKDSGQAGVIAYAITEAGFWVGSVPFALGAAYVATGEIPDWTTEEGKTALGGYAFVLINFARLIVPARIALALAFAPWVDENIVK 136          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1105.984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJS4_ECTSI8.480e-7365.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2USK8_9STRA2.780e-3558.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SU83_9STRA2.100e-2350.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7T0Q7_9STRA2.780e-2242.50Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A8J2X2M9_9STRA3.070e-2247.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CSF4_9STRA4.100e-2141.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4E7C2_9STRA4.670e-1944.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CMH7_9STRA3.780e-1844.90Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0G4GD47_VITBC8.590e-1645.71Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3ZUG5_9STRA7.000e-1547.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1105contigF-serratus_M_contig1105:122220..126849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue1e-60
Seed eggNOG ortholog2880.D8LJS4
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E0UH@1,2S883@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_003080.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1515
Cds size831
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.8342464-UTR-F-serratus_M_contig1105:122219..1224001622928980.8342464-UTR-F-serratus_M_contig1105:122219..122400Fucus serratus maleUTRF-serratus_M_contig1105 122220..122400 +
1690962654.432827-UTR-F-serratus_M_contig1105:122219..1224001690962654.432827-UTR-F-serratus_M_contig1105:122219..122400Fucus serratus maleUTRF-serratus_M_contig1105 122220..122400 +
1622928980.9198477-UTR-F-serratus_M_contig1105:126346..1268491622928980.9198477-UTR-F-serratus_M_contig1105:126346..126849Fucus serratus maleUTRF-serratus_M_contig1105 126347..126849 +
1690962654.500816-UTR-F-serratus_M_contig1105:126346..1268491690962654.500816-UTR-F-serratus_M_contig1105:126346..126849Fucus serratus maleUTRF-serratus_M_contig1105 126347..126849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.853818-CDS-F-serratus_M_contig1105:122400..1227041622928980.853818-CDS-F-serratus_M_contig1105:122400..122704Fucus serratus maleCDSF-serratus_M_contig1105 122401..122704 +
1690962654.444959-CDS-F-serratus_M_contig1105:122400..1227041690962654.444959-CDS-F-serratus_M_contig1105:122400..122704Fucus serratus maleCDSF-serratus_M_contig1105 122401..122704 +
1622928980.8697422-CDS-F-serratus_M_contig1105:124065..1241811622928980.8697422-CDS-F-serratus_M_contig1105:124065..124181Fucus serratus maleCDSF-serratus_M_contig1105 124066..124181 +
1690962654.4541097-CDS-F-serratus_M_contig1105:124065..1241811690962654.4541097-CDS-F-serratus_M_contig1105:124065..124181Fucus serratus maleCDSF-serratus_M_contig1105 124066..124181 +
1622928980.8837574-CDS-F-serratus_M_contig1105:124778..1250001622928980.8837574-CDS-F-serratus_M_contig1105:124778..125000Fucus serratus maleCDSF-serratus_M_contig1105 124779..125000 +
1690962654.4628153-CDS-F-serratus_M_contig1105:124778..1250001690962654.4628153-CDS-F-serratus_M_contig1105:124778..125000Fucus serratus maleCDSF-serratus_M_contig1105 124779..125000 +
1622928980.8951094-CDS-F-serratus_M_contig1105:125597..1257771622928980.8951094-CDS-F-serratus_M_contig1105:125597..125777Fucus serratus maleCDSF-serratus_M_contig1105 125598..125777 +
1690962654.47195-CDS-F-serratus_M_contig1105:125597..1257771690962654.47195-CDS-F-serratus_M_contig1105:125597..125777Fucus serratus maleCDSF-serratus_M_contig1105 125598..125777 +
1622928980.9087024-CDS-F-serratus_M_contig1105:126337..1263461622928980.9087024-CDS-F-serratus_M_contig1105:126337..126346Fucus serratus maleCDSF-serratus_M_contig1105 126338..126346 +
1690962654.4894457-CDS-F-serratus_M_contig1105:126337..1263461690962654.4894457-CDS-F-serratus_M_contig1105:126337..126346Fucus serratus maleCDSF-serratus_M_contig1105 126338..126346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1105.984.1prot_F-serratus_M_contig1105.984.1Fucus serratus malepolypeptideF-serratus_M_contig1105 122401..126346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1105.984.1

>prot_F-serratus_M_contig1105.984.1 ID=prot_F-serratus_M_contig1105.984.1|Name=mRNA_F-serratus_M_contig1105.984.1|organism=Fucus serratus male|type=polypeptide|length=277bp
MMMVRRYRLGAFIFFFNNTVRTVHCVEPIKRERGCCFRKKGFLLAAGYHP
PQHTCVAERWGLVCRSTEMVTMKAFLFQTLVGLSIVRGISAFVVTGGSSR
SRCRTPPGRPVRSYIAKQQHQQQQQTWLAMSADSTEEEMSALDKALVAWG
VKSPPGEPEIDLKDKIKSAGLAGALAYGGTELAFWVISVPLAVVGYHQTT
GDWLDLTTLEGKEELFGLTAGFLTFARLVVPLRIALALALTPAMDKYVVK
GFLNRGGGETAAVAEDGESGGASEAK*
back to top

mRNA from alignment at F-serratus_M_contig1105:122220..126849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1105.984.1 ID=mRNA_F-serratus_M_contig1105.984.1|Name=mRNA_F-serratus_M_contig1105.984.1|organism=Fucus serratus male|type=mRNA|length=4630bp|location=Sequence derived from alignment at F-serratus_M_contig1105:122220..126849+ (Fucus serratus male)
GTGTCCCTGCATGGCGATGAATGTAAGTGTACAGTATAACGGTGGGATTC TCCCCGACATTATACTGCTGACCCAATGTTACCACCATCGGGGAACCCGT TCAAACGCCATGAAGACGTTTTGTATTTGCATCCTATGATCCCACCTAAA CGTTTTGACATTTTTTTCTCCTGACTGGAGGATGATGATGGTCAGAAGGT ATAGATTAGGCGCGTTCATATTTTTCTTTAACAATACTGTCAGAACTGTC CACTGTGTTGAACCAATCAAACGGGAAAGGGGGTGTTGCTTTCGTAAGAA GGGGTTCTTACTGGCGGCGGGGTACCATCCCCCACAGCACACCTGTGTAG CAGAAAGGTGGGGCCTTGTGTGCAGATCAACCGAGATGGTTACCATGAAG GCGTTCCTTTTCCAGACTCTTGTGGGCCTTTCGATCGTCCGGGGCATCTC TGCCTTCGTGGTCACTGGCGGGTCTTCTAGATCCCGTGAGTGTGGTCCAG CAATGTTCGTTTCATACTGGTAGATCACAAGGGCTTAGCTCATTACATGC GTTTCGAATGTACGGTTTCAACCCTGGGCTGCCGGGTGAGATGCTTGTAC ATATGTGTCATACAAGCAACACGCCGGTTGTTCATGAATCGTCGCCTCCA GGACATGTGTGACACCCGTATTTGCGACCCGTATCATCGATATTGGAACA AGTCTGGTGCTCTCCAACGTTAAGTGTTCCAGAATCAATTTGGCTCAGAA GGCAATAAATAGACTACAATGAAGAGGGCGAAGGAGTACAACTATGCCTG AATACAGAATGCGATTTCGTTGTGCCTCCGAACTCTCGGTTGAAGGTTAA ATGTCCATGGCCGGTAGCGTCCTTCGCTCGTCCGACGTGCCGCGTACGTA TATGATTTTCTATCACCCAGTACGGCTGAAACGTAGCTCTGATGGCTGAA GTTGTATGATGCACCTTTTTCAGTTTTTAAGCGTACCGCAACTTGGTCTG CTGGCAGATTCAGCTCGGGTGTGGAGAATGAGCGGGCTGACGCAGGACGG GACGGGGCCGAACCCGTTTCGCGAGACCAAATTATCAGGCGCGAACGGGG TCAAGAAAAAAAAATCAAAACAATTTTCCCCGTTCAGATGACCACGGGCA GGATTGGCAGCCATACCGGTTGATGCCCAATCTTCTGGATGTGAACCCCA CATACTGACAATATCTATATCCTCTGGACTGTCCCCAGAAAATATAAAAT CAGATTCGAAGTACTATTAATACTGTACCATGTGTTGTGTACTTTAAAAA GTTAAAAATATTAATATGCTGTAGAGCTATCAATAATAGATGCAGGACCA GACTGTTCAAAGAAAATCTGAACGCGTAGACCTTCTCAACAGTCTTACGC ACAGCAATGGTTCATGTAAGTTAGCTCGTGTTTTCACTAGCGCTAGAGAT CGTTGGCGAAACGCCCGGGATGAATCTTGCGAGCCGCGACATTTTCTAAC CCCTTTTAGTTCCCGGGCACCTTGTTTGTACACCTGCTGACATGTTTTCT CTACAAATCAGACAACTGAGTGCTAATGCAAAGAGTCGGTTTGCAAACCG GTCTCGCAAGCTGGCTAGCCTGCCGTACGTTTGGGCACTTGGCCTACGTC GTAACTGTTCTCTTCGGGCCCAGCATCTTGAGAGCATCTTGAGAGCTTGG GGCGAGGTGGAGCCAGTAGCCATGGTCTCCCACGTTTCTCGAACGTCGGT GTAGTTTTGTTACAGAATCTTCGTTTCAGCAGTATTCCGTACATGGTGTT GAACGACGTCGAAATCGTTATCTCTTGGAACCTCGTTCGTCGACAGGCTG CCGAACCCCACCTGGGCGACCCGTGCGAAGCTACATCGCGAAGCAGCAAC ATCAGCAGCAGCAGCAGACGTGGCTAGCGATGTCTGCCGATTCCACCGAG GAGGAGATGAGCGTGAGTGCTTCCGTTTGTTCCGACCAACGCTCTCGTTT GAGAGCACTCGCGTTGAGTTTTTGCGTGTCGAAGCAATGCACGCGATCGG CGTTCAGGAACAAAAACTCGGTCGTTTGTTTTCGTTCGCAATCAGCTGTT GACAGGCTTCGAGCGCCTCACTCTGTATTGGATCGCGTATCATATTCCAG GCTCCTCATACCGCAAACGTTGCTCTAGAGCCACCCTCTCAATGACACCA TCCGCTAACTGTACATCGTATGTCTACATTTGTACAGTAGCCGGCGCCAA GATCGCCATGCGCGGCTGGGAAGAACCACAACGCCCAGAGGTTGCGATGT CCATCGTCTCCGCTTGCCGTATCCTCTCTTGGGGTGTTACAATATATTCG TAACAAGTATTCAGTTCGTAATCAGGAATCCGTGCGAGCTTTTTAGGCTG TGCGTCGCTTCGTGATACCCTCTCGGTGATGGATAATAGACCAAAAAGAG AAACGAGGTATGTGTCTACTTTACGCCATTTTATGACTGCCTTTTTGGGT GCAGACTCCGCCTCGAAACCAAACCACACACTTATCGTCGTTTTCGACAA CCCAACCAGGCGTTGGACAAGGCATTGGTGGCGTGGGGCGTCAAGAGCCC CCCCGGCGAACCAGAGATCGACCTCAAGGACAAGATCAAGTCGGCGGGTC TCGCGGGTGCTCTGGCCTACGGGGGCACGGAGCTGGCCTTCTGGGTGATC AGCGTACCCCTTGCAGTTGTGGGATACCACCAGACCACGGGAGATTGGCT CGACCTTACAACCCTCGAGGGCAAGGAGGAGGCGAGTACAGTACGGCGTA GTGCAGCAGGGCGTCGGAAATTTGTACTTTGTAAAGCTTTTTTTAAAGCC TTTGAAACCAACCGGCGAGGCGAGGTGCAAAATGGGAAGCAGGTTGCTGC ACCTACACCTTCGATAGCCGCGTCTTGCTTAGAGCTAAACCACTTTCTTA TTCCGCGTACCGTCGGGCGCTCGCACAGCCTCAATCACCCGGAGAGGTTT GGACAGTGCGTTCGCAAGGTATTTGGTAGTGTCGCCGGCCGGCGGTGGGC GGGCCCCAACCGGCACGATACCAGTGGCATCACCGGTGGCCGAGTCGGTG GAGTGGTCATCGGGCGTGGTCTTGCTCCGCAGAACGCAACACTCAATTTC ATGTACCGTACATTTTCCCGATCGAACGTTAATAAGAGCAACGCCCGCTG AACACGATCCTTATAAGGTAACAAACACGGCATTTGAAAGGCTAACGACG ACGCTCCCCGTGATCCCCCCCCCACGTAGCGCAGGGACCGTTCAACCGAC GCAATATGTCCAGCCCTTTTCCTGCCTTTTGTTCTGTAACTCTGTATATG TCCTCCCCCCGCGCGCTGCTCTTTCCAGCTGTTCGGCTTGACCGCGGGCT TCCTAACGTTTGCTCGGCTGGTGGTGCCCTTACGCATCGCCCTGGCTCTG GCGCTGACGCCGGCCATGGACAAGTACGTCGTCAAGGGTTTTTTAAACCG CGGTGGAGGGGAGACGGCCGCAGTCGCCGAGGACGGGGAAAGCGGTGGCG CGTCCGAGGTGTGAGTTGACCCCCCAGACTCTCACAAGAGCGTAGATCGT CTTCCGAGTTTGTTTTGACGGGGGAGGGCGAGGCCTAGCATATACTCGGG AGGCATAATATTGCATTCATTGTATGGTCGTGCTGACGTCACGTTCGCGG CTATCGTTATCGTCACCGTTACACCATCTTTTGCGGCGAGCCTTTTCGTT ATCGATAGGAAAGTCTCGTGCTAGGCCCTGGATGGACCAATAGCCCCCAC CACCACCAGCAAGAGCAAAGTCGAACTTATCTTTGTTCCGAGCGCCGATA AGAGCCTTTTCCCGTCAAAAGTAATGGATAGGCTGGGCAGGGAAAATGAA TAGTGTACGGAGTCATGATTTTTCAAGTTCGCATTTCATATCATCAGAAC GTTCTTTTAAACTCATTTATGTGTAATAAGGGTGTTACCACGCGAGATTC CTCATGCGGTAAAGGCGAATGCAGTGTCGAATATCCAAAAAATCTCACAC AACTATTGCCGCACCCATGCTTCCTTTTCAACTGTACTGTAAACATGCAC CCTCTCATCTCATTAAAGGCCAAGTGATGTTCGTCCCATAAAAAACACGG GCCGTCGCAAGGATTTCAACGACGAGGGGCTGTCGCACCGCATTAGGGAG GCCGAGGTGCGGGAGCGTAGTCGATTGCTTCGTGAGCGCCTGTCCGGCCC TTGAAGGGCAAACGGCTCACGAGGGAAGATTTTGCGGAAGACCGACCCAT CCGTTGATACCATTGGGTATATTATAAGAGAATAAGCAGGCGAGGCACAT CTTCCAGACTAAAGAGTAGCTCTGTGGGTGGCGCTTCTCCTGAACGTCGT CGCTCATTTTGGAAGGAGCCAGGGGGTTACCCTGGCTTGTATCGTTTCCT TCGTATTGTCGTATCCTGTAGATCTACCTGTTACTGTACACAACCATAGA ATCGACAATCGACATCGAGAGTGGGACGTGCCGCTAGTGACGTTACTGTA CAGTAGTACATACTTGTGAGGGATTGGTTCATCACTGGATGTCAAATTAT CTTACATGTACTAAATAATGACGGTCATGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1105:122220..126849+

>mRNA_F-serratus_M_contig1105.984.1 ID=mRNA_F-serratus_M_contig1105.984.1|Name=mRNA_F-serratus_M_contig1105.984.1|organism=Fucus serratus male|type=CDS|length=1662bp|location=Sequence derived from alignment at F-serratus_M_contig1105:122220..126849+ (Fucus serratus male)
ATGATGATGGTCAGAAGGTATAGATTAGGCGCGTTCATATTTTTCTTTAA
CAATACTGTCAGAACTGTCCACTGTGTTGAACCAATCAAACGGGAAAGGG
GGTGTTGCTTTCGTAAGAAGGGGTTCTTACTGGCGGCGGGGTACCATCCC
CCACAGCACACCTGTGTAGCAGAAAGGTGGGGCCTTGTGTGCAGATCAAC
CGAGATGGTTACCATGAAGGCGTTCCTTTTCCAGACTCTTGTGGGCCTTT
CGATCGTCCGGGGCATCTCTGCCTTCGTGGTCACTGGCGGGTCTTCTAGA
TCCCATGATGATGGTCAGAAGGTATAGATTAGGCGCGTTCATATTTTTCT
TTAACAATACTGTCAGAACTGTCCACTGTGTTGAACCAATCAAACGGGAA
AGGGGGTGTTGCTTTCGTAAGAAGGGGTTCTTACTGGCGGCGGGGTACCA
TCCCCCACAGCACACCTGTGTAGCAGAAAGGTGGGGCCTTGTGTGCAGAT
CAACCGAGATGGTTACCATGAAGGCGTTCCTTTTCCAGACTCTTGTGGGC
CTTTCGATCGTCCGGGGCATCTCTGCCTTCGTGGTCACTGGCGGGTCTTC
TAGATCCCGCTGCCGAACCCCACCTGGGCGACCCGTGCGAAGCTACATCG
CGAAGCAGCAACATCAGCAGCAGCAGCAGACGTGGCTAGCGATGTCTGCC
GATTCCACCGAGGAGGAGATGAGCGCTGCCGAACCCCACCTGGGCGACCC
GTGCGAAGCTACATCGCGAAGCAGCAACATCAGCAGCAGCAGCAGACGTG
GCTAGCGATGTCTGCCGATTCCACCGAGGAGGAGATGAGCGCGTTGGACA
AGGCATTGGTGGCGTGGGGCGTCAAGAGCCCCCCCGGCGAACCAGAGATC
GACCTCAAGGACAAGATCAAGTCGGCGGGTCTCGCGGGTGCTCTGGCCTA
CGGGGGCACGGAGCTGGCCTTCTGGGTGATCAGCGTACCCCTTGCAGTTG
TGGGATACCACCAGACCACGGGAGATTGGCTCGACCTTACAACCCTCGAG
GGCAAGGAGGAGGCGTTGGACAAGGCATTGGTGGCGTGGGGCGTCAAGAG
CCCCCCCGGCGAACCAGAGATCGACCTCAAGGACAAGATCAAGTCGGCGG
GTCTCGCGGGTGCTCTGGCCTACGGGGGCACGGAGCTGGCCTTCTGGGTG
ATCAGCGTACCCCTTGCAGTTGTGGGATACCACCAGACCACGGGAGATTG
GCTCGACCTTACAACCCTCGAGGGCAAGGAGGAGCTGTTCGGCTTGACCG
CGGGCTTCCTAACGTTTGCTCGGCTGGTGGTGCCCTTACGCATCGCCCTG
GCTCTGGCGCTGACGCCGGCCATGGACAAGTACGTCGTCAAGGGTTTTTT
AAACCGCGGTGGAGGGGAGACGGCCGCAGTCGCCGAGGACGGGGAAAGCG
GTGGCGCGTCCGAGCTGTTCGGCTTGACCGCGGGCTTCCTAACGTTTGCT
CGGCTGGTGGTGCCCTTACGCATCGCCCTGGCTCTGGCGCTGACGCCGGC
CATGGACAAGTACGTCGTCAAGGGTTTTTTAAACCGCGGTGGAGGGGAGA
CGGCCGCAGTCGCCGAGGACGGGGAAAGCGGTGGCGCGTCCGAGGCCAAG
TGAGCCAAGTGA
back to top