mRNA_F-serratus_M_contig110.957.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig110.957.1
Unique NamemRNA_F-serratus_M_contig110.957.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Match: A0A6H5JTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW3_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 7.630e-80
Identity = 186/446 (41.70%), Postives = 230/446 (51.57%), Query Frame = 1 
Query:  199 GRFRDSASPSLAAATVISTAACSLEDKGASHPQSHTVASRSMGMTMMTTP---------SGPEGAEWAGWECKFSGVDGKRVVVPEDYVPESLREWDVEVWGFETLTSEQLRRQEP--DQIG------VFYRKRARVFPEVGCALDNLSLEVNVQTLSLDEEGIFFGAFP--------GGSYIMGKKP-ASSQCLRMEAGLVVSGRDFGDALPPQETDEGGAGEQS---------------RMRVEYQVE-------TRGNEGQGELAGCLGATVTVTRERGYRAAFDDGLLYKGGGLDAQKLRGLLCSDCFSEKEDAPVAATLAGEWRCDPGMWSDLHNSMDKG-APQQDPPDDTPPRSMLLERSETFWESRSDAAGGGIECLMMRGGLTLRSGPWRGDSDSDRQNWGGAADCRVRPSGLEGSSGVGKAM---------WAVEVG 1362
            GR   +A PS A+AT  S+       +   HP+ H VA+                    SG  GAEWAGWEC+FSG DG+ V VPEDYVPESLREWDV  WGFETLTSEQLR++E   D+ G      + YRKR RVFPE GCALDNLSLEVN +T  L+ + +F  +FP         G +IM ++P A S  L++E GL+V G  F D      T     GEQS               R RVE +V+              G  A  LG  VTVTRER YR  FDDGLLYKGGGLD+QKLRGLL S CF+E E++P    LAG W   PG W         G AP+   P D     +  +R              GI+ L++ GG+T+RSGPW G + +D     G +    +  G  G++  G+           WAVEVG
Sbjct:    4 GRTLSAAEPSTASATDYSSRINHPRRRRRQHPRLHGVAAERSAXXXXXXXXXXXXXEAFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV--WGFETLTSEQLRKKEDQGDKNGGGSCTDLLYRKRGRVFPETGCALDNLSLEVNARTSPLEGDDVFVASFPVEGSSSSSAGGHIMAQQPVAGSPSLQLEVGLLVPGVQFTDPSMSASTPAVQDGEQSAAXXXXXXDGGQECSRARVEVRVDGXXXXXXXXXXXXXGGAAATLGPIVTVTRERRYRNDFDDGLLYKGGGLDSQKLRGLLRSKCFAECEESPTTDDLAGNWVSGPGHWQLFRTHAAGGSAPRACTPTDG--GGVAFDRETA-----------GIKTLLLPGGITVRSGPWLGAAAAD-----GTSSAPEKRWGAAGAALAGETAGFPTEEAEPWAVEVG 429
[Close]
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Match: D8LLB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB7_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.490e-46
Identity = 125/319 (39.18%), Postives = 157/319 (49.22%), Query Frame = 1 
Query:  532 VFYRKRARVFPEVGCALDNLSLEVNVQTLSLDEEGIFFGAFP--------GGSYIMGKKPAS-SQCLRMEAGLVVSGRDFGD-----ALPPQETDE-------------GGAGEQSRMRVEYQVE------TRGNEGQGELAGCLGATVTVTRERGYRAAFDDGLLYKGGGLDAQKLRGLLCSDCFSEKEDAPVAATLAGEWRCDPGMWSDLHNSMDKGAPQQDPPDDTPPRSMLLERSETFWESRSDAAGGGIECLMMRGGLTLRSGPWRGDSDSDRQNWGGAADCRVRPSGLEGSSGVGKAM---------WAVEVG 1362
            + YRKR RVFPE GCALDNLSLEVN  T  L+   +F  +FP        GG +I+ K+PA+ S  L++E GL+V G  F D     + P  E  E              G  E SR RVE +V+                A  LG  VTVTRER YR  FDDGLLYKGGGLD+QKLRGLL S CF+E E++P    LAG W   PG W         G+          PR+            R  A   GI+ L++ GG+T+RSGPW G + +D     G +    +  G  G++  G+           WAVEVG
Sbjct:   10 LLYRKRGRVFPETGCALDNLSLEVNALTSPLEGGDVFVASFPVEGSSSSSGGGHIVAKQPAAGSPSLQLEVGLLVPGAQFTDPSMSASTPAVEDGEKSAAXXXXXXXXXDGGRECSRARVEVRVDGXXXXXXXXXXXXXXXAAALGPIVTVTRERKYRDDFDDGLLYKGGGLDSQKLRGLLRSKCFAEYEESPTTDDLAGNWVSGPGHWQLFRTHAAGGSA---------PRACAPTGGGGATFDRETA---GIKTLLLPGGITVRSGPWLGAAAAD-----GTSSAPEKRWGAAGAALAGETAGFPTEEAEPWAVEVG 311
[Close]
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Match: A0A836C8Z5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.790e-33
Identity = 109/319 (34.17%), Postives = 152/319 (47.65%), Query Frame = 1 
Query:  295 QSHTVASRSMGMTMMTTPSGPEGAEWAGWECKFSGVDGKRVVVPEDYVPESLREWDVEVWGFETLTSEQLRRQEPDQIGVFYRKRARVFPEVGCALDNLSLEVNVQTLSLDEEGIFFGAFPGGS--YIMGKKP-ASSQCLRMEAGLVVSGRDFGDALPPQETDEGGAGEQSRMRVEYQVETRGNEGQGELAGCLGATVTVTRERGYRAAFDDGLLYKGGGLDAQKLRGLLCSDCFSEKEDAPVAATLAGEWRCDPGMWSDLHNSMDKGAPQQDPPDDTPPRSMLLERSETFWESRSDAAGGGIECLMMRGGLTLRSGPW 1242
            +S T +S S   +M    SG    EWAGWEC+FS V G+R+ +PEDY+PESLREWDV VWGFE L SE+L     +     YR+RA+V+PE GCALD+LSLE+   T+ L      F   P G+   ++ K P   S  L +   + VS  D                 Q R+R+   V+             +   +TV  ER Y A+FDDG LY  G LD + L   L + CF+E E+AP             G+ +D+H ++    P                       + +  AG  +  L +RGG+T+R+  W
Sbjct:   31 RSTTTSSASRACSMKVDTSG----EWAGWECRFSQVSGQRMSIPEDYIPESLREWDVPVWGFEVLHSERLTTGAGN--AELYRRRAQVYPETGCALDHLSLEMRAATIPLTPPDATFLELPEGNGFALIQKAPFGGSHTLEL---VAVSSSDA----------------QRRVRLLATVDVAKR--------AITRPLTVAVERCY-ASFDDGALYTHG-LDIKTLTETLGAKCFAEYEEAPE------------GVAADVHYALAYHPPL----------------------AHAVIAGADV-ALALRGGVTVRAASW 279
[Close]
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Match: A0A7S2UYG3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYG3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.820e-7
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 1 
Query:  541 RKRARVFPEVGCALDNLSLEVNVQT---LSLDEEGIFFGA----------FPGGSYIMGKKPASSQCLRMEAGLVVSGRDFGDALPPQETDEGGAGEQSRMRVEYQVETRGNEGQGELAGCLGAT-VTVTRERGYRAAFDDGLLYKGGGLDAQKLRGLL 975
            R RA VFP+ GCALDNL+++ +      LS+  EG F  A          FPG  YI      +S   ++E GL++      +      ++E  + + +  R+   +  R  +  G+    LG   + +  ER YR  +D G +Y GGGLD Q L+ ++
Sbjct:   12 RTRAFVFPDTGCALDNLTVQKSKPVPLALSVASEGSFSRASLEGHGAKVVFPGVGYIHDIVDPASNDFKLETGLML--HSLAETSLASGSNETPSEDNAWRRLRVSLSLRPPQTPGDNGWKLGVRPMEIVVERLYRKGYDSGDIYNGGGLDTQTLQQMI 168
[Close]
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Match: A0A5J4YVA8_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVA8_PORPP)

HSP 1 Score: 58.2 bits (139), Expect = 1.750e-5
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  367 EWAGWECKFSGVDGKRVVVPEDYVPESLREWDVEVWGFETLTSEQLRRQEPDQIGVFYRKRARVFPEVGCALDNLSLEV 603
            E+ G+E  FS   G    +PE  +P++ R WD+E+ GF+ LTS ++   + D       KR R+ P VGC  D ++ EV
Sbjct:  127 EFVGYEVTFSARTGAPQSIPERLIPDAFRTWDIELLGFDALTSSRVD-VDSDGKSCLQLKRTRMLPAVGCEADAVATEV 204
[Close]
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Match: UPI0009E2C571 (uncharacterized protein LOC110021087 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2C571)

HSP 1 Score: 55.8 bits (133), Expect = 8.390e-5
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 1 
Query:  229 LAAATVISTAACSLEDKGASHPQSHTVASRSMGMTMMTTPSGPEGAEWAGWECKFSGVDGKRVVVPEDYVPESLREWDVEVWGFET----LTSEQLRRQEPDQIGVFYRKRARVFPEVGCALDNLS-LEVNVQTLSLDEEGIF-FGAFPGGSY 669
            L+A++V S+AA S +     H ++ T AS +         SG    EW G+  +FS  +GK V +PE  VP++ REWDVE++ ++T    L SE     EP    +F+ K  ++ P VGC  D  +   V  + + + E  +  FG  P G Y
Sbjct:   50 LSASSVSSSAATSAQSLHVQHEET-TPASLTHWGDFAVRVSG----EWDGFCAEFS-AEGKPVELPESVVPDAFREWDVELFDWQTQCPTLASEA---GEP----LFFYKLIKLLPTVGCEADAATRYSVRERIVGVSENDVLAFGYHPSGRY 189
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig110.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTW3_9PHAE7.630e-8041.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLB7_ECTSI1.490e-4639.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8Z5_9STRA1.790e-3334.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UYG3_9STRA2.820e-730.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5J4YVA8_PORPP1.750e-536.71Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
UPI0009E2C5718.390e-533.33uncharacterized protein LOC110021087 n=1 Tax=Phala... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig110contigF-serratus_M_contig110:654419..660942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog159749.K0RB16
Hectar predicted targeting categoryother localisation
EggNOG OGs2EPZP@1,2ST39@2759,2XDX8@2836
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002010.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons7
Model size1362
Cds size1362
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.5226483-CDS-F-serratus_M_contig110:654418..6545471622928971.5226483-CDS-F-serratus_M_contig110:654418..654547Fucus serratus maleCDSF-serratus_M_contig110 654419..654547 +
1690962652.2662132-CDS-F-serratus_M_contig110:654418..6545471690962652.2662132-CDS-F-serratus_M_contig110:654418..654547Fucus serratus maleCDSF-serratus_M_contig110 654419..654547 +
1622928971.5377765-CDS-F-serratus_M_contig110:657158..6574971622928971.5377765-CDS-F-serratus_M_contig110:657158..657497Fucus serratus maleCDSF-serratus_M_contig110 657159..657497 +
1690962652.2791789-CDS-F-serratus_M_contig110:657158..6574971690962652.2791789-CDS-F-serratus_M_contig110:657158..657497Fucus serratus maleCDSF-serratus_M_contig110 657159..657497 +
1622928971.554573-CDS-F-serratus_M_contig110:658070..6581981622928971.554573-CDS-F-serratus_M_contig110:658070..658198Fucus serratus maleCDSF-serratus_M_contig110 658071..658198 +
1690962652.2887642-CDS-F-serratus_M_contig110:658070..6581981690962652.2887642-CDS-F-serratus_M_contig110:658070..658198Fucus serratus maleCDSF-serratus_M_contig110 658071..658198 +
1622928971.568725-CDS-F-serratus_M_contig110:658536..6586211622928971.568725-CDS-F-serratus_M_contig110:658536..658621Fucus serratus maleCDSF-serratus_M_contig110 658537..658621 +
1690962652.2981033-CDS-F-serratus_M_contig110:658536..6586211690962652.2981033-CDS-F-serratus_M_contig110:658536..658621Fucus serratus maleCDSF-serratus_M_contig110 658537..658621 +
1622928971.5837505-CDS-F-serratus_M_contig110:659093..6593491622928971.5837505-CDS-F-serratus_M_contig110:659093..659349Fucus serratus maleCDSF-serratus_M_contig110 659094..659349 +
1690962652.309157-CDS-F-serratus_M_contig110:659093..6593491690962652.309157-CDS-F-serratus_M_contig110:659093..659349Fucus serratus maleCDSF-serratus_M_contig110 659094..659349 +
1622928971.6002405-CDS-F-serratus_M_contig110:660161..6602861622928971.6002405-CDS-F-serratus_M_contig110:660161..660286Fucus serratus maleCDSF-serratus_M_contig110 660162..660286 +
1690962652.3205888-CDS-F-serratus_M_contig110:660161..6602861690962652.3205888-CDS-F-serratus_M_contig110:660161..660286Fucus serratus maleCDSF-serratus_M_contig110 660162..660286 +
1622928971.6130245-CDS-F-serratus_M_contig110:660642..6609421622928971.6130245-CDS-F-serratus_M_contig110:660642..660942Fucus serratus maleCDSF-serratus_M_contig110 660643..660942 +
1690962652.3306875-CDS-F-serratus_M_contig110:660642..6609421690962652.3306875-CDS-F-serratus_M_contig110:660642..660942Fucus serratus maleCDSF-serratus_M_contig110 660643..660942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig110.957.1prot_F-serratus_M_contig110.957.1Fucus serratus malepolypeptideF-serratus_M_contig110 654419..660942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig110.957.1

>prot_F-serratus_M_contig110.957.1 ID=prot_F-serratus_M_contig110.957.1|Name=mRNA_F-serratus_M_contig110.957.1|organism=Fucus serratus male|type=polypeptide|length=454bp
KGAPDVLTVRNPTMTTSPFLVSDWTTAPLLLSGFCSAPQVPFVPRAVVRR
PRGWHGQPGVALTSANGRFRDSASPSLAAATVISTAACSLEDKGASHPQS
HTVASRSMGMTMMTTPSGPEGAEWAGWECKFSGVDGKRVVVPEDYVPESL
REWDVEVWGFETLTSEQLRRQEPDQIGVFYRKRARVFPEVGCALDNLSLE
VNVQTLSLDEEGIFFGAFPGGSYIMGKKPASSQCLRMEAGLVVSGRDFGD
ALPPQETDEGGAGEQSRMRVEYQVETRGNEGQGELAGCLGATVTVTRERG
YRAAFDDGLLYKGGGLDAQKLRGLLCSDCFSEKEDAPVAATLAGEWRCDP
GMWSDLHNSMDKGAPQQDPPDDTPPRSMLLERSETFWESRSDAAGGGIEC
LMMRGGLTLRSGPWRGDSDSDRQNWGGAADCRVRPSGLEGSSGVGKAMWA
VEVG
back to top

mRNA from alignment at F-serratus_M_contig110:654419..660942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig110.957.1 ID=mRNA_F-serratus_M_contig110.957.1|Name=mRNA_F-serratus_M_contig110.957.1|organism=Fucus serratus male|type=mRNA|length=6524bp|location=Sequence derived from alignment at F-serratus_M_contig110:654419..660942+ (Fucus serratus male)
AAGGGTGCCCCTGACGTGCTGACTGTGCGGAATCCGACTATGACTACCAG
TCCCTTCCTGGTTTCAGACTGGACCACGGCCCCTCTTTTACTTTCTGGAT
TCTGCTCTGCGCCGCAGGTTCCTTTCGTGGTAAGTAGATGGCATTGACTG
AACGGCATGACTTGACGCGCGTACAACGGGCCTTCGTGCGTAGCTACTTT
TTCGAGATGGGTCTTGGCCGATTTCCTGGAGCAACAGCAGTCAACCTTGG
AACCAGTACTACATGGCGATACTTATTACGCTCCAGCTACGGAAGCGTGT
GGTAATCCTGCGTATTGTGCTCTATGAAAGAAGGCTAGTGCTGTGGTCCC
GAAATAGCGCAGTTGGCATTAAAAAAAACGCGGCGCAACCCATCTCAGAC
CCATGTGTCATGAACTTACCCGGTTGATCCATACCTGGTATTATGCAATG
AGTTATGACTCACCATGCATACTATAGAAAAAACAGGGTATTTCAAATGG
CTTGGCTATCCAGTGCCCGAGCGGACTATCAATGCAGTATTCAGGTTCGA
TAAGGCGTAAATAGTATATTAAACCAAAGTAGGTGAACTCGGGTTCAATC
TTGTGGGTTCAACCGGAATCCTCCCCAGTAATTCGGCGAGGAAAATAAGC
TGCAATACGTACGACCGATAGCTGGCCGGGATTCGAATCCAGTCTAAGTC
GACGCTATTGTGATCAGGATACTAGAATATAATGTCAGATCCCAGGGTAA
AAGTCCTTTGGTGATCACCATAGGGTGCTTACTCTTCAAAACAGAGGATT
TTCGAAGGCTTCCAGCAGTCTTCTCCACTAACCCTATCCTACTTCCCATA
TATTCCAACGCCCCTTACCCGCAACAGTGGCCCTAAATTGCACATCAGTC
CAGATGTTTCCGTTGATCTTCATGGCTAAGGGCCTGTATTAACGATGTTC
GGAAAATCAAAATCGGAAAAAAACAAAATCAAAATTGGGCTCTGATTGGT
CGAGGTCTTAAAACCTCCCGACTTCGCCAGTTTATTTTTTGGAAATCGCT
GCCAAACCAAAGAAGTCCCCAGGGACTTAATGTTTATTTTTTGGAAAATA
AACATTGGAGGTGTTCACCTGATCGAAGGCTTTCCGAATGCTACACACCA
ACAGAGCACAGCAATTTTTACAACAACAGCAGCACGTAGAGAGACTGCAC
CGTCCGCCATACCATACACACAACTTCTGCTGGCATGGCCCACGCCAACG
GTCCCAAGGCGAGAAGGAATTGTTACCTCTCCCAGCTGGTGGTGGGGACA
GGTGCAACGAGTGGTGTTGAACTTTGGAGACGCCGATACAACCCGAAAGG
CGACGGGTTCTGAACTTTGGAAAAAATCAGGCTCGAGGTAGACTTGAAAC
ACGGGGGCCGCGTCACAGCACACATAACACATCTGTTTTATACAACTCGT
GTGTTGCTGTCTGTCATGTACGGTACTGCTGTAGACCGGCTTGTGAAATA
ACGCATGCGATGATGGTTGTAGCCTCCACACATACGCACTGCATCGTCTA
ATACCTTAGCACAGATAGACTTCGTATGTGTACTATGTACCAGTAGTTCT
ACTGCTGCTGTTCCTCTCTTTTATTACATTAGAAGCGAGTACTGTCCGCC
CGCACGTCGAAAGCACAAAAGGTAAACTACAACGAGGTCGAAGCCCACAC
ACGCTGTGAACTGTCCATTACGTTGAGAAAGTCCATCAACAGCGACGACC
TCGCAGTCGTCACTCTAAGCAAACGACAAAGACGCTTGGTCCTTGGGCTA
CGAGGAGGATGCACGATTGGCGAGAGAGACAGCAGTACAGCAGTAGTACT
GCTACTACTTGCTGTGTGGTGTAAAATTGTTTTTCCAACGCCGAGAGGTT
TTACATACTGGCGGCGTTAATAGCCCGTTCGACTATTTTCCGTTAATGTG
ACTCGCAGTGTTTTTCTGCAAATCTATCTTTGCTTTTTGCTTTTTGATGT
TCCGATTTTCCGAACATCGTTAATACAGGCCCTAAGGGCGGTGTGTAGAT
AAAAAAAGGCGCATGGAACATGGAACGTGGAACTTCGAATTACTTGCCAT
TCCTCGTTCCCTGTTCTATACGCTGTGTCCCAAAAAATAAAACTGAAGCT
GCAATGCTGAACTGTCGAACCTGGTTTTAGTTGAAAAGTCTGGTAGAGCC
ACGATTTGAGAACATCGACACAACGAAACAGAAGGTATAGGCGCATGGAA
ATTTTTATTTCGCCTGAGGACCGCTGTTTTGGAATTTTCTGAGCCTTTTG
CCCTCGACCAGCCCGTTCCATGTGAGCTCTTCACTAATATTAAGAAACTT
GAGGCTTAAAATTATTTATGCAGCGGGAACAAAAAAAATGGAATTGCGGC
GGCGGACCCTCTTTCCAGGAAACTTATTTTTGTCGTTGGCCAATCGTAGA
GAGATTCGAAGTTCCACGTTCCACGTTCCCTGCGCTTTTTTTTTATCTAA
AACCGCCTTAAGTAGTTATAGAGCTACACATATCGACCACGAGCAGGATT
GGCAACCTTGCTGTTTGTAGCCATAGGGGGCAAGGAAACAAAATATCCAT
TTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGA
TCCATATTCTGCTATATGTGTTAACCATACATACATACATACATATCGTC
TCCAAGAACTTCCCTGTCGTTACCGTTCCTGCGGACGAAGCCGCGAGCAG
TTGTCCGCCGGCCGCGCGGATGGCATGGACAACCTGGGGTCGCTTTGACT
TCCGCCAATGGCAGATTCCGTGACAGCGCTTCTCCGTCATTAGCAGCAGC
CACAGTAATATCAACGGCCGCATGTTCTCTCGAGGACAAGGGTGCCTCCC
ACCCCCAGTCCCATACCGTGGCCTCTCGGTCAATGGGAATGACCATGATG
ACAACGCCATCTGGACCAGAAGGGGCGGAGTGGGCCGGCTGGGAGTGCAA
ATTCTCTGGAGTAGACGGGAAGCGTGTGGTCGTGCCGGAGGACTACGTGC
CGGAGTCTCTTCGGGAGTGGGACGTGGAGGTATGATTTGGTACGGCAACG
AGTGCCCCACCACTGCACAAGGCCGAGACTCGCCACGGTAATGCTCTAGA
TAGCACTAACGCTGTCCCACTAGCTCTAGTCACTAGACACTAGCCACTAT
TAATAGAGCTGTGCGCCGCGAGAAAGGGGCTGCGTTCTGATTGCCCTATG
GCGTCGGTTGGTGTGCCGCCTTGGAGGAACGTTATCTCTGTCGAAGATTT
GATATCGGCACCAGAAGGTCCCCCTGTATCGCGAGAAGGCAGTGACGTGG
TGCATTTGCTTTTAAGAGGGAATAGGGTCACCGCCCGCCCGCGACCATAT
TTTCATTACTAGCAGGACTGGCAAAACTCCTCGGGGCGCATCATTCGCTT
GGATTAACATTATTTTTCTGGCGAGTCGTCGAAAAGAAAGGGAACGAAAG
CATCAACAACAGCAACAGCAGCAACAACAAGCGATACAGCGTTTGTACGG
AACGTTACGGTATACCGTATCTGCTTTCGCGGGAAGAGTCCCATCGCCCG
CTGTTGGTCACTTCATCTCTGCCAAAGAAGTCTTTTTTCTTTTTCGCGGC
AGGTGTGGGGTTTCGAGACCCTGACCAGCGAGCAGTTGAGGAGGCAAGAG
CCGGACCAGATAGGAGTTTTCTACCGCAAGCGGGCGAGGGTGTTCCCCGA
GGTTGGGTGTGCTCTGGATAACCTCTCCTTGTGAGCACCTGTTTGGGAGT
GCCGACCAGAGAACCGTGTTGACTTGACCCTTGACTATAATATATACCTG
GTACAGTATTCGCTCTTGCTCGGAACGAAACAGGGTAGGAGGGGGGAAAT
CAAGTGCTGCATGCCGTGCACAACAGCTGCCCAACGGTAGCAACCCAGCG
CATAGTCAAGACCCAGACAGCTGTCGTCGTGCATAGAATCCGCCGGAGGA
GGAGCCTTATCAAAGTGCGCCGTCGATCGCTTGTTGCAACCTCGCTCTGC
CCTCGCCGCCACCCTCACCCTCACCCTCGCCCCGATGGCCGGTGCCGCGA
TGCCGCGTTATTCGACAGAGAGGTTAATGTTCAGACGTTGTCACTGGACG
AGGAGGGAATCTTCTTCGGCGCATTCCCCGGTGGGAGCTACATCATGGGG
AAGGTAATCTTGTTTCTCTTGATAGTGAGGTAATGTCAATAATGTACCAG
GGTATACCGTTTGCTCCGATCGGGGAGTGCACCACACAAGTTTCGGGAGT
ATACCATACTATGAATGGTACAATTAATGGTTTTTCAACAGTTCGGGCGG
GCAGGGTCCCGTGGAGGGTAGCTAAAGGCGGTGCGAATGACGAGAGCAAG
TCCCGAATGATACGCAGCTTCGCACGTCGTGGTTGCGAAACGGCCTACGG
TGGGTGCAGCCGAGCTATGCCCTCCCATAAACTTGTGCCATATGGATGGT
AAACCGGACTGCAGGACAGCAGGATCGCGCCAAATGTCGGAAACTCGCGA
TTGCGGTTACGGCTACGGTTTATATCCCGCCCAAGCCACATCACACAAGC
ATTCGGGGTTAAGCTCTTCGGCCATCCCCATTCCCTGCGATCGCCTCTCC
CTCCACTCGGCCCGCCACTCTCTAGAAACCCGCGAGCTCGCAGTGCTTGA
GAATGGAAGCCGGACTTGTCGTGTCCGGCAGAGATTTCGGAGACGCGCTT
CCACCGCAGGAGACCGATGAAGGAGGCGCAGGAGAGCAATCAAGGATGAG
GGTGGAATATCAAGTCGAAACCAGGGGCAACGAAGGTCAAGGAGAGCTGG
CGGGCTGCCTGGGGGCGACGGTGACCGTCACGCGGGAACGGGGGTACCGC
GCTGCGTTCGACGACGGCCTGCTGTATAAAGGTGTATTTTGTGGCGGTGA
CTTGTGGTGGTTTGGGCTTATTCTGTCCATCGATATGTTTGTGTGTGTGT
GTGTGTCACACTCTGTCTACAGACAGATCTTACTTATGCCCTGAGCGCCA
ATCCCTTCCTCCCTGATTCCTTTGTACTCTCTGGATTGGTTGGGCCGACA
TGTACTGAACCAAAACTTTCTTGACCGCGTTTTTTTCTCCTTCTGTCCAA
GAATCCCCCGTTTTCCATATCGCGTCTATAACTCTTCTTGGGTTTCTCGC
GCCTCTTCGCCTCTCCTTTACCCTGCCCGATCCTGTCCCTCGCCTCCTGT
CCCTGAGCTCTGGCCCTCCGCATGATGTGGCGGTCTCGCGCGGGCGTCGG
GTCTTGCGGTTGTGGTTGCTGACTACCATACTCTTTGGCGTCGCCACTCC
CTCTCGCGTCTTCCGATCCACCTCGATAATAGCCACTTCGAAGGTCCCAA
GGGTCTCTCTCCCCTCCACCCCCATCGCTATTCTCGTCTACGTCCCCCGT
TCTCGCCACCATCCCTACCCTTGTGCTCATTCCCGCCTCCTTGGTACCAC
ATCATCGGGCAGGCGCCGGGTCTTACGCACGAAGCTGTTTGTATGTATTT
ATTAAATTGCGCATAAGCGCGCAATCCGGCCCTGTCATCCTAGTCCTCCC
AAGGGGGGATCAATGATACTTATTTGTGCGAGAACGGGTGTGTATGTGTG
AGCATGCGCGCCCGATCATACTGTGCGCTCAATGTAGCTTATGGCCTCGA
TCGGTCGCTGGCGGCACCCGATCGTCACGCGAACTATTCTCAGGTGGCGG
GCTGGACGCCCAGAAACTCCGCGGCCTTCTTTGCTCTGACTGCTTTAGCG
AGAAGGAGGACGCTCCGGTCGCCGCTACGTTGGCGGGCGAGTGGCGATGC
GACCCCGGCATGTGGAGCGTAAGTGGAATCGTGTGACATGTCGCATTCTC
AATATAAGCGCATGTAAAGGCGAGCGTTGGTCGTTTCGGTCGAGTCGCTT
CACCATTACCTTCTCTATGTTTCGAACAGAATGATGATTGCAGGAATCAA
TTGGATGAACGCAAAACCGCCGTGGAATCGATATCTGCAACACCCACCCA
TCTTGTATAGCTTGCGACGATGCCCCTCTATGCGATGCGGCATGAAAACC
CCGCCAGCCCCCCTCTCGAAGAGCCCAAGTCTCTACGTCGTTAAGCCGGG
CGATGCTCAATGGCATCCGGTTAGCCTTAGGATGTATACGCTCTGGCCTT
CCCGTGAATTGTGCTCGACCACAGGACTTACACAACTCCATGGATAAAGG
GGCCCCACAGCAGGACCCTCCGGATGATACACCTCCTCGATCAATGCTGC
TCGAGCGATCTGAAACATTCTGGGAGAGCAGGAGCGACGCAGCCGGGGGC
GGGATCGAGTGCCTAATGATGCGTGGCGGGCTGACCCTTCGATCAGGGCC
ATGGCGTGGTGACTCGGATTCCGACAGACAAAATTGGGGCGGCGCTGCCG
ATTGTAGAGTGCGACCGTCGGGGCTGGAAGGGAGTTCGGGCGTGGGGAAG
GCGATGTGGGCCGTCGAAGTGGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig110:654419..660942+

>mRNA_F-serratus_M_contig110.957.1 ID=mRNA_F-serratus_M_contig110.957.1|Name=mRNA_F-serratus_M_contig110.957.1|organism=Fucus serratus male|type=CDS|length=2724bp|location=Sequence derived from alignment at F-serratus_M_contig110:654419..660942+ (Fucus serratus male)
AAGGGTGCCCCTGACGTGCTGACTGTGCGGAATCCGACTATGACTACCAG
TCCCTTCCTGGTTTCAGACTGGACCACGGCCCCTCTTTTACTTTCTGGAT
TCTGCTCTGCGCCGCAGGTTCCTTTCGTGAAGGGTGCCCCTGACGTGCTG
ACTGTGCGGAATCCGACTATGACTACCAGTCCCTTCCTGGTTTCAGACTG
GACCACGGCCCCTCTTTTACTTTCTGGATTCTGCTCTGCGCCGCAGGTTC
CTTTCGTGCCGCGAGCAGTTGTCCGCCGGCCGCGCGGATGGCATGGACAA
CCTGGGGTCGCTTTGACTTCCGCCAATGGCAGATTCCGTGACAGCGCTTC
TCCGTCATTAGCAGCAGCCACAGTAATATCAACGGCCGCATGTTCTCTCG
AGGACAAGGGTGCCTCCCACCCCCAGTCCCATACCGTGGCCTCTCGGTCA
ATGGGAATGACCATGATGACAACGCCATCTGGACCAGAAGGGGCGGAGTG
GGCCGGCTGGGAGTGCAAATTCTCTGGAGTAGACGGGAAGCGTGTGGTCG
TGCCGGAGGACTACGTGCCGGAGTCTCTTCGGGAGTGGGACGTGGAGCCG
CGAGCAGTTGTCCGCCGGCCGCGCGGATGGCATGGACAACCTGGGGTCGC
TTTGACTTCCGCCAATGGCAGATTCCGTGACAGCGCTTCTCCGTCATTAG
CAGCAGCCACAGTAATATCAACGGCCGCATGTTCTCTCGAGGACAAGGGT
GCCTCCCACCCCCAGTCCCATACCGTGGCCTCTCGGTCAATGGGAATGAC
CATGATGACAACGCCATCTGGACCAGAAGGGGCGGAGTGGGCCGGCTGGG
AGTGCAAATTCTCTGGAGTAGACGGGAAGCGTGTGGTCGTGCCGGAGGAC
TACGTGCCGGAGTCTCTTCGGGAGTGGGACGTGGAGGTGTGGGGTTTCGA
GACCCTGACCAGCGAGCAGTTGAGGAGGCAAGAGCCGGACCAGATAGGAG
TTTTCTACCGCAAGCGGGCGAGGGTGTTCCCCGAGGTTGGGTGTGCTCTG
GATAACCTCTCCTTGTGTGGGGTTTCGAGACCCTGACCAGCGAGCAGTTG
AGGAGGCAAGAGCCGGACCAGATAGGAGTTTTCTACCGCAAGCGGGCGAG
GGTGTTCCCCGAGGTTGGGTGTGCTCTGGATAACCTCTCCTTAGAGGTTA
ATGTTCAGACGTTGTCACTGGACGAGGAGGGAATCTTCTTCGGCGCATTC
CCCGGTGGGAGCTACATCATGGGGAAGAGAGGTTAATGTTCAGACGTTGT
CACTGGACGAGGAGGGAATCTTCTTCGGCGCATTCCCCGGTGGGAGCTAC
ATCATGGGGAAGAAACCCGCGAGCTCGCAGTGCTTGAGAATGGAAGCCGG
ACTTGTCGTGTCCGGCAGAGATTTCGGAGACGCGCTTCCACCGCAGGAGA
CCGATGAAGGAGGCGCAGGAGAGCAATCAAGGATGAGGGTGGAATATCAA
GTCGAAACCAGGGGCAACGAAGGTCAAGGAGAGCTGGCGGGCTGCCTGGG
GGCGACGGTGACCGTCACGCGGGAACGGGGGTACCGCGCTGCGTTCGACG
ACGGCCTGCTGTATAAAGAAACCCGCGAGCTCGCAGTGCTTGAGAATGGA
AGCCGGACTTGTCGTGTCCGGCAGAGATTTCGGAGACGCGCTTCCACCGC
AGGAGACCGATGAAGGAGGCGCAGGAGAGCAATCAAGGATGAGGGTGGAA
TATCAAGTCGAAACCAGGGGCAACGAAGGTCAAGGAGAGCTGGCGGGCTG
CCTGGGGGCGACGGTGACCGTCACGCGGGAACGGGGGTACCGCGCTGCGT
TCGACGACGGCCTGCTGTATAAAGGTGGCGGGCTGGACGCCCAGAAACTC
CGCGGCCTTCTTTGCTCTGACTGCTTTAGCGAGAAGGAGGACGCTCCGGT
CGCCGCTACGTTGGCGGGCGAGTGGCGATGCGACCCCGGCATGTGGAGCG
TGGCGGGCTGGACGCCCAGAAACTCCGCGGCCTTCTTTGCTCTGACTGCT
TTAGCGAGAAGGAGGACGCTCCGGTCGCCGCTACGTTGGCGGGCGAGTGG
CGATGCGACCCCGGCATGTGGAGCGACTTACACAACTCCATGGATAAAGG
GGCCCCACAGCAGGACCCTCCGGATGATACACCTCCTCGATCAATGCTGC
TCGAGCGATCTGAAACATTCTGGGAGAGCAGGAGCGACGCAGCCGGGGGC
GGGATCGAGTGCCTAATGATGCGTGGCGGGCTGACCCTTCGATCAGGGCC
ATGGCGTGGTGACTCGGATTCCGACAGACAAAATTGGGGCGGCGCTGCCG
ATTGTAGAGTGCGACCGTCGGGGCTGGAAGGGAGTTCGGGCGTGGGGAAG
GCGATGTGGGCCGTCGAAGTGGGGGACTTACACAACTCCATGGATAAAGG
GGCCCCACAGCAGGACCCTCCGGATGATACACCTCCTCGATCAATGCTGC
TCGAGCGATCTGAAACATTCTGGGAGAGCAGGAGCGACGCAGCCGGGGGC
GGGATCGAGTGCCTAATGATGCGTGGCGGGCTGACCCTTCGATCAGGGCC
ATGGCGTGGTGACTCGGATTCCGACAGACAAAATTGGGGCGGCGCTGCCG
ATTGTAGAGTGCGACCGTCGGGGCTGGAAGGGAGTTCGGGCGTGGGGAAG
GCGATGTGGGCCGTCGAAGTGGGG
back to top