mRNA_F-serratus_M_contig110.948.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig110.948.1
Unique NamemRNA_F-serratus_M_contig110.948.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig110.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig110contigF-serratus_M_contig110:389109..389485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.3346546-CDS-F-serratus_M_contig110:389108..3892681622928964.3346546-CDS-F-serratus_M_contig110:389108..389268Fucus serratus maleCDSF-serratus_M_contig110 389109..389268 +
1690962649.005756-CDS-F-serratus_M_contig110:389108..3892681690962649.005756-CDS-F-serratus_M_contig110:389108..389268Fucus serratus maleCDSF-serratus_M_contig110 389109..389268 +
1622928964.3505497-CDS-F-serratus_M_contig110:389279..3894851622928964.3505497-CDS-F-serratus_M_contig110:389279..389485Fucus serratus maleCDSF-serratus_M_contig110 389280..389485 +
1690962649.0161986-CDS-F-serratus_M_contig110:389279..3894851690962649.0161986-CDS-F-serratus_M_contig110:389279..389485Fucus serratus maleCDSF-serratus_M_contig110 389280..389485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig110.948.1prot_F-serratus_M_contig110.948.1Fucus serratus malepolypeptideF-serratus_M_contig110 389109..389485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig110.948.1

>prot_F-serratus_M_contig110.948.1 ID=prot_F-serratus_M_contig110.948.1|Name=mRNA_F-serratus_M_contig110.948.1|organism=Fucus serratus male|type=polypeptide|length=122bp
IWYGQSSNTRVDNHHNGYTMHTILPRKPQETCENVTAAHHSRRQTSSSYI
FTYYTPIPFRPANTQHVKNTQSYSTQVIESIFSTETTDTNQTFIAVSHKT
SPRIIDPSTLGLNTRIALIAL*
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mRNA from alignment at F-serratus_M_contig110:389109..389485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig110.948.1 ID=mRNA_F-serratus_M_contig110.948.1|Name=mRNA_F-serratus_M_contig110.948.1|organism=Fucus serratus male|type=mRNA|length=377bp|location=Sequence derived from alignment at F-serratus_M_contig110:389109..389485+ (Fucus serratus male)
ATCTGGTATGGGCAAAGTTCTAATACCCGAGTTGATAATCATCATAACGG
CTACACTATGCATACGATTCTGCCAAGAAAACCTCAAGAGACGTGCGAAA
ACGTAACAGCAGCACACCATTCAAGGCGCCAGACATCCTCATCTTATATA
TTTACTTATTGTATAGTGAAGATACTCCGATTCCGTTTCGACCCGCGAAT
ACACAACACGTCAAAAATACCCAATCGTATAGTACACAAGTGATAGAATC
TATCTTTTCCACGGAAACGACAGATACAAATCAAACTTTCATCGCAGTGT
CCCACAAAACATCTCCCAGGATTATCGATCCTTCAACTTTAGGTCTAAAT
ACTAGGATAGCTCTAATAGCTCTATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig110:389109..389485+

>mRNA_F-serratus_M_contig110.948.1 ID=mRNA_F-serratus_M_contig110.948.1|Name=mRNA_F-serratus_M_contig110.948.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig110:389109..389485+ (Fucus serratus male)
ATCTGGTATGGGCAAAGTTCTAATACCCGAGTTGATAATCATCATAACGG
CTACACTATGCATACGATTCTGCCAAGAAAACCTCAAGAGACGTGCGAAA
ACGTAACAGCAGCACACCATTCAAGGCGCCAGACATCCTCATCTTATATA
TTTACTTATTATCTGGTATGGGCAAAGTTCTAATACCCGAGTTGATAATC
ATCATAACGGCTACACTATGCATACGATTCTGCCAAGAAAACCTCAAGAG
ACGTGCGAAAACGTAACAGCAGCACACCATTCAAGGCGCCAGACATCCTC
ATCTTATATATTTACTTATTATACTCCGATTCCGTTTCGACCCGCGAATA
CACAACACGTCAAAAATACCCAATCGTATAGTACACAAGTGATAGAATCT
ATCTTTTCCACGGAAACGACAGATACAAATCAAACTTTCATCGCAGTGTC
CCACAAAACATCTCCCAGGATTATCGATCCTTCAACTTTAGGTCTAAATA
CTAGGATAGCTCTAATAGCTCTATAGATACTCCGATTCCGTTTCGACCCG
CGAATACACAACACGTCAAAAATACCCAATCGTATAGTACACAAGTGATA
GAATCTATCTTTTCCACGGAAACGACAGATACAAATCAAACTTTCATCGC
AGTGTCCCACAAAACATCTCCCAGGATTATCGATCCTTCAACTTTAGGTC
TAAATACTAGGATAGCTCTAATAGCTCTATAG
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