mRNA_F-serratus_M_contig11.927.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.927.1
Unique NamemRNA_F-serratus_M_contig11.927.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1087727..1089229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.0628-CDS-F-serratus_M_contig11:1087727..10880011622928960.0628-CDS-F-serratus_M_contig11:1087727..1088001Fucus serratus maleCDSF-serratus_M_contig11 1087728..1088001 -
1690962646.855925-CDS-F-serratus_M_contig11:1087727..10880011690962646.855925-CDS-F-serratus_M_contig11:1087727..1088001Fucus serratus maleCDSF-serratus_M_contig11 1087728..1088001 -
1622928960.0813-CDS-F-serratus_M_contig11:1089140..10892291622928960.0813-CDS-F-serratus_M_contig11:1089140..1089229Fucus serratus maleCDSF-serratus_M_contig11 1089141..1089229 -
1690962646.866358-CDS-F-serratus_M_contig11:1089140..10892291690962646.866358-CDS-F-serratus_M_contig11:1089140..1089229Fucus serratus maleCDSF-serratus_M_contig11 1089141..1089229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.927.1prot_F-serratus_M_contig11.927.1Fucus serratus malepolypeptideF-serratus_M_contig11 1087728..1089229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.927.1

>prot_F-serratus_M_contig11.927.1 ID=prot_F-serratus_M_contig11.927.1|Name=mRNA_F-serratus_M_contig11.927.1|organism=Fucus serratus male|type=polypeptide|length=121bp
GQPAAASGASGVSSPVGLTANDSACGEWDGYKLGGSTSSSSSLAKKTGRR
SIGGNSSRLSLASRKTRDRSTATRQEVVSRAETGGNGDEEGDGKGGGQER
GGRAKQRRSSSAESGLIRKVA
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mRNA from alignment at F-serratus_M_contig11:1087727..1089229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.927.1 ID=mRNA_F-serratus_M_contig11.927.1|Name=mRNA_F-serratus_M_contig11.927.1|organism=Fucus serratus male|type=mRNA|length=1503bp|location=Sequence derived from alignment at F-serratus_M_contig11:1087727..1089229- (Fucus serratus male)
GGACAACCAGCTGCTGCTAGTGGGGCTTCTGGCGTGAGCAGCCCCGTGGG
GTTGACAGCGAACGATAGCGCATGCGGCGAGTGGGACGGGTGAGTTTTCG
TGTAAAGAGAGGCGGCGTGGGGCCGCGGTCGTTATTGTCGTCGGTCTTCG
TACTGCATCGATACACACTATTACCGTAGGTTCAGGACAGACTCTATTAT
AGTAGTTCGTTCAATAGCTGGAGTTTGGGGTTAGGCTTACAAATGCGTAT
TTGAAATCTTCCACCAGCAACGAGTGGTGTAATTCATCCTAATCGTCGAG
CTTAACGAGTGAAAATGATCATTTACGTTACGCGTTTATAATTATGTAGT
TAGCGGTGGAGCGTGTTGCGTGTCCGTCGGAGATGATGCGTCCCGACCCT
GCTGCTGCTCCTTTCAGTTGACAGTTAGAAGAGGGTACGTACTTCTTCAG
GAGTAACAACCGTGCTTCCCTTCGGTTCTCTGGATCCTTCACTCGCTTCG
AAGTTTTCGAGCTTCCCCGCTAGTGCTTGCGTCGCAGCTCTTGAGCTACT
GGGACTCCGCACCCGCTGCCACGGTTTCCCCGCATCCCCCCCATTGGACA
TGCTCCCGTGTAAACTGAACTTTGTATATCGTCTACTGTTGTACCCCACT
GTTGGGTCCCCCGAGCATTTTAGATGGAGAGACCCATAGCCAGTACAGCA
CCTGCCGACGACGCCCTAAAAAGAGCTACTTTTTTTAAAACGCTTATGAT
GGTAATTTTACGTGGTATTTATTTATCTGTCGGATGAAGTCGTTTTATTT
TTATTTTTCACGCGGTGCTGCACGTTAGATAAGAAAAAGAAGCACTATTA
CATATTAGTGTTTTACATCATATTAACTGATTCGCTACGAATCCAGCCGT
GTCAACCAAACCTGAAACACGGTTGGAGAAGATAAAAAATGCGGGAAAAG
CAGACAGAAGAGTAGCCTCCAAAGAACAACGTCGCCAGGAAGAAACAGTA
TACAGGTTAGAAAGGTTCTAGAGGTATTTCTACCGCTGTTTTTATTCATT
GGGCAAGGGGGTGCGCACAAGTTGTCCCACTGTTTCTTCGGCACTAATGG
TAATGTTTTAAGCCATCTGAAATCATATTTTCAAGTCGTAACATGTTATG
TTTTTCCCTACGCTTGAAATGGAAATGCCTGCACTTCTCTACCCCATCCC
TCCATCTCCTTATTTTTTCTAACTCTAGGTACAAGTTGGGCGGTAGCACG
AGCTCTTCGTCTTCCTTAGCTAAGAAAACCGGCAGACGAAGCATCGGCGG
CAATAGCAGCAGGCTTTCCCTTGCGTCGCGGAAGACCCGCGACCGTTCTA
CCGCTACCCGTCAGGAGGTGGTGTCTCGAGCGGAGACTGGGGGCAACGGA
GACGAGGAAGGGGACGGCAAAGGGGGGGGACAAGAAAGGGGAGGGAGAGC
AAAGCAGCGCCGCTCGTCCTCGGCAGAGTCCGGCCTGATCCGGAAGGTCG
CCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:1087727..1089229-

>mRNA_F-serratus_M_contig11.927.1 ID=mRNA_F-serratus_M_contig11.927.1|Name=mRNA_F-serratus_M_contig11.927.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig11:1087727..1089229- (Fucus serratus male)
GGACAACCAGCTGCTGCTAGTGGGGCTTCTGGCGTGAGCAGCCCCGTGGG
GTTGACAGCGAACGATAGCGCATGCGGCGAGTGGGACGGGGACAACCAGC
TGCTGCTAGTGGGGCTTCTGGCGTGAGCAGCCCCGTGGGGTTGACAGCGA
ACGATAGCGCATGCGGCGAGTGGGACGGGTACAAGTTGGGCGGTAGCACG
AGCTCTTCGTCTTCCTTAGCTAAGAAAACCGGCAGACGAAGCATCGGCGG
CAATAGCAGCAGGCTTTCCCTTGCGTCGCGGAAGACCCGCGACCGTTCTA
CCGCTACCCGTCAGGAGGTGGTGTCTCGAGCGGAGACTGGGGGCAACGGA
GACGAGGAAGGGGACGGCAAAGGGGGGGGACAAGAAAGGGGAGGGAGAGC
AAAGCAGCGCCGCTCGTCCTCGGCAGAGTCCGGCCTGATCCGGAAGGTCG
CCGTACAAGTTGGGCGGTAGCACGAGCTCTTCGTCTTCCTTAGCTAAGAA
AACCGGCAGACGAAGCATCGGCGGCAATAGCAGCAGGCTTTCCCTTGCGT
CGCGGAAGACCCGCGACCGTTCTACCGCTACCCGTCAGGAGGTGGTGTCT
CGAGCGGAGACTGGGGGCAACGGAGACGAGGAAGGGGACGGCAAAGGGGG
GGGACAAGAAAGGGGAGGGAGAGCAAAGCAGCGCCGCTCGTCCTCGGCAG
AGTCCGGCCTGATCCGGAAGGTCGCC
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