mRNA_F-serratus_M_contig1098.895.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1098.895.1
Unique NamemRNA_F-serratus_M_contig1098.895.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1098.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1098contigF-serratus_M_contig1098:141689..142231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.6606011-CDS-F-serratus_M_contig1098:141688..1422311622928956.6606011-CDS-F-serratus_M_contig1098:141688..142231Fucus serratus maleCDSF-serratus_M_contig1098 141689..142231 +
1690962645.2357888-CDS-F-serratus_M_contig1098:141688..1422311690962645.2357888-CDS-F-serratus_M_contig1098:141688..142231Fucus serratus maleCDSF-serratus_M_contig1098 141689..142231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1098.895.1prot_F-serratus_M_contig1098.895.1Fucus serratus malepolypeptideF-serratus_M_contig1098 141689..142231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1098.895.1

>prot_F-serratus_M_contig1098.895.1 ID=prot_F-serratus_M_contig1098.895.1|Name=mRNA_F-serratus_M_contig1098.895.1|organism=Fucus serratus male|type=polypeptide|length=181bp
KSPVAGWDRVVSFHRTETRGTKLFLSKQVLSARLQPGKNPAIVIGEIMEL
LSALDEVGIPVHEEFIWLHFVHNLPPGYEFIKNNLQGSKGSLTRIVLGDA
LRSRYNVQSGGEKGRTSLNSELFVSGSKTGRGVGHGGGRSETNKGKLDSR
DRSEGLSLQAKMTCNHCQKPGHMRPNCPERQ
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mRNA from alignment at F-serratus_M_contig1098:141689..142231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1098.895.1 ID=mRNA_F-serratus_M_contig1098.895.1|Name=mRNA_F-serratus_M_contig1098.895.1|organism=Fucus serratus male|type=mRNA|length=543bp|location=Sequence derived from alignment at F-serratus_M_contig1098:141689..142231+ (Fucus serratus male)
AAGTCGCCAGTGGCTGGTTGGGACAGGGTCGTTTCTTTTCATCGTACAGA
AACCCGAGGAACGAAGCTATTCCTTAGCAAACAAGTTCTTAGCGCTCGCC
TTCAGCCGGGTAAAAATCCTGCCATCGTCATCGGCGAGATCATGGAACTG
CTTTCCGCATTAGACGAGGTGGGAATACCCGTGCACGAAGAGTTTATCTG
GCTGCACTTTGTGCACAACCTCCCCCCCGGTTACGAGTTTATTAAGAACA
ACCTGCAAGGCTCAAAGGGGTCACTAACACGCATTGTGCTGGGAGATGCA
CTGCGGAGCAGGTACAACGTACAATCGGGCGGGGAAAAGGGGAGAACGAG
CCTGAATTCTGAATTATTCGTATCTGGCTCGAAGACTGGACGGGGAGTTG
GCCACGGTGGAGGTCGTAGTGAAACTAACAAGGGTAAGCTGGACAGCAGG
GATCGAAGTGAGGGGCTTTCATTGCAGGCGAAAATGACCTGCAATCACTG
CCAAAAGCCCGGGCACATGCGACCTAACTGTCCCGAGCGTCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1098:141689..142231+

>mRNA_F-serratus_M_contig1098.895.1 ID=mRNA_F-serratus_M_contig1098.895.1|Name=mRNA_F-serratus_M_contig1098.895.1|organism=Fucus serratus male|type=CDS|length=1086bp|location=Sequence derived from alignment at F-serratus_M_contig1098:141689..142231+ (Fucus serratus male)
AAGTCGCCAGTGGCTGGTTGGGACAGGGTCGTTTCTTTTCATCGTACAGA
AACCCGAGGAACGAAGCTATTCCTTAGCAAACAAGTTCTTAGCGCTCGCC
TTCAGCCGGGTAAAAATCCTGCCATCGTCATCGGCGAGATCATGGAACTG
CTTTCCGCATTAGACGAGGTGGGAATACCCGTGCACGAAGAGTTTATCTG
GCTGCACTTTGTGCACAACCTCCCCCCCGGTTACGAGTTTATTAAGAACA
ACCTGCAAGGCTCAAAGGGGTCACTAACACGCATTGTGCTGGGAGATGCA
CTGCGGAGCAGGTACAACGTACAATCGGGCGGGGAAAAGGGGAGAACGAG
CCTGAATTCTGAATTATTCGTATCTGGCTCGAAGACTGGACGGGGAGTTG
GCCACGGTGGAGGTCGTAGTGAAACTAACAAGGGTAAGCTGGACAGCAGG
GATCGAAGTGAGGGGCTTTCATTGCAGGCGAAAATGACCTGCAATCACTG
CCAAAAGCCCGGGCACATGCGACCTAACTGTCCCGAGCGTCAGAAGTCGC
CAGTGGCTGGTTGGGACAGGGTCGTTTCTTTTCATCGTACAGAAACCCGA
GGAACGAAGCTATTCCTTAGCAAACAAGTTCTTAGCGCTCGCCTTCAGCC
GGGTAAAAATCCTGCCATCGTCATCGGCGAGATCATGGAACTGCTTTCCG
CATTAGACGAGGTGGGAATACCCGTGCACGAAGAGTTTATCTGGCTGCAC
TTTGTGCACAACCTCCCCCCCGGTTACGAGTTTATTAAGAACAACCTGCA
AGGCTCAAAGGGGTCACTAACACGCATTGTGCTGGGAGATGCACTGCGGA
GCAGGTACAACGTACAATCGGGCGGGGAAAAGGGGAGAACGAGCCTGAAT
TCTGAATTATTCGTATCTGGCTCGAAGACTGGACGGGGAGTTGGCCACGG
TGGAGGTCGTAGTGAAACTAACAAGGGTAAGCTGGACAGCAGGGATCGAA
GTGAGGGGCTTTCATTGCAGGCGAAAATGACCTGCAATCACTGCCAAAAG
CCCGGGCACATGCGACCTAACTGTCCCGAGCGTCAG
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