mRNA_F-serratus_M_contig1098.894.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1098.894.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI) HSP 1 Score: 660 bits (1704), Expect = 2.730e-213 Identity = 447/779 (57.38%), Postives = 505/779 (64.83%), Query Frame = 2
Query: 122 TSGTDLATAALSFAYAHSRLDISTGELLEVIATCAIPQLVSMPLRDLANIAWAFAVQRHLHHELLAGIAHEVTSERTRRGGLDRMSVKDASVLAWSYGALGLRPAGLFATLAQEGLSMVHEATAHDLSNLAWGLARAGLGAIDEDAEGETTDNSLEGDGEGIHSGSSSPSSSIDSNSNIARDTPRPEDRDDGAHSGDGTQAPDPAFPPLAPDSSGEFKDLEGRGVSDEGGPWGLGWVLRKKAAAGRRRGAGRGDHGRGVAAILRDAAEKSVVNEGFDAVRDTREAGCAVGGDGARDGDDGGGVAGILAGVRHEGELDLLTSSQEDAAGVDVESPPLGQRLGEAVLIRASDCFGQFPPKHLSRLCWALGAWHDQGVV-LPGAGLFTARALAEAGQHPKSYTAEELAQVLWSFATLVGNSDSPTQELAGLLGALAEGFESEQAEGV-----------AGRSSGLDAATACDVLWSFAKLGHPAHSLCEAMARDLVDQVQQLPPSSVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGYTVSLKRSFDFSPDDLRSLNPSASANLLWGLVKTGAAFADGFDREDLEAVAADVGPKLLSFSPTELCRTAWALGRLGVGGVYFGGARAVDIGA--SEDDGVVPEGXXXXXDGSEMSRLMDKLLGECSKWLELFTPQELETLLWAVCRLEHRADDLVAKMAAEAKQRQEGLPGLLQRSGPSAARDAAFHLGSFRHLLTKYAGIDFDGQKARGRYRRGKSLLSRMFRER 2416
TSGTDLATAALSFAYAH+RLDISTGELLEVIA CA PQL +MPLRDLAN++WAFAVQ LH E++AG+ E+ S R RM+ KDAS+LAW+YG LGLRPA + L +EGL+ V EAT HDLSNLAWGLA+AG WGLGWV + G G G G E+ EG G +G D+ +S E A D+ S G R + ++ F F P+ LSRLCWALGAWH +G V L G+ +F AR+L+EAGQHPK YTAEELAQVLW+FATLVG +DSP ELAGL+GALAEGFE+E A G+ AGR GLDAATACDVLWSFA +GHPAHSLCEAMARDLV++V +LPPSSV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GYTVSLKR FD + DDL SL+PSASANLLWGLVKT AAFADGFDRE LEAVAAD+GPKLLSFSP ELCRTAWALGRLG+GGV FGG A D G S+DDG +G G E+S LMDKLLGECSKW+E+FTPQELETLLWAVCRLEHRADDLVA MAAE K+RQE LP LL++SGPSAARDAAFHLG+FRHLL KY G+DFDG++ARGRYRRGKS++SRMFRER
Sbjct: 512 TSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLAAMPLRDLANLSWAFAVQHRLHPEMMAGVGREIVSSRAS----GRMAAKDASILAWAYGMLGLRPARVIEALTREGLATVQEATPHDLSNLAWGLAKAGAXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGLGWVKSRWER-------GSGPEGDGE-------EEQEDCGEGLS-------------------------EEGSGSGEASSDPADIHATSVETLA--DLVSRREGGRGFDG-----AESFQHFQPRQLSRLCWALGAWHGRGSVKLLGSDIFAARSLSEAGQHPKEYTAEELAQVLWAFATLVGKADSPAHELAGLVGALAEGFETEGARGMGXXXXXXXVSAAGREGGLDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGP-ATDGGGGDSDDDGPAVDG------GCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1204
BLAST of mRNA_F-serratus_M_contig1098.894.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE) HSP 1 Score: 654 bits (1688), Expect = 1.930e-212 Identity = 404/801 (50.44%), Postives = 471/801 (58.80%), Query Frame = 2
Query: 122 TSGTDLATAALSFAYAHSRLDISTGELLEVIATCAIPQLVSMPLRDLANIAWAFAVQRHLHHELLAGIAHEVTSERTRRGGLDRMSVKDASVLAWSYGALGLRPAGLFATLAQEGLSMVHEATAHDLSNLAWGLARAGLGA-------IDEDAEGETTDNSLEGDGEGIHSGSSSPSSSIDSNSNIARDTPRPEDRDDGAHSGDGTQAPDPAFPPLAPDSSGEFKDLE--GRGVSDEGGPWGLGWVLRKKAAAGRRRGAGRGDHGRGVAAILRDAAEKSVVNEGFDAVRDTREAGCAVGGDGARDGDDGGGVAGILAGVRHEGELDLLTSSQEDAAGVDVESPPLGQRLGEAVLIRASDCFGQFPPKHLSRLCWALGAWHDQGVV-LPGAGLFTARALAEAGQHPKSYTAEELAQ-------------VLWSFATLVGNSDSPTQELAGLLGALAEGFESEQAEGV-----------AGRSSGLDAATACDVLWSFAKLGHPAHSLCEAMARDLVDQVQQLPPSSVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGYTVSLKRSFDFSPDDLRSLNPSASANLLWGLVKTGAAFADGFDREDLEAVAADVGPKLLSFSPTELCRTAWALGRLGVGGVYFGGARAVDIGA--SEDDGVVPEGXXXXXDGSEMSRLMDKLLGECSKWLELFTPQELETLLWAVCRLEHRADDLVAKMAAEAKQRQEGLPGLLQRSGPSAARDAAFHLGSFRHLLTKYAGIDFDGQKARGRYRRGKSLLSRMFRER 2416
TSGTDLATAALSFAYAH+RLDISTGELLEVIA CA PQL +MPLRDLAN++WAFAVQR LH E++AG+ E+ S R M+ KDAS+LAW+YG LGLRP+ + L +EGL+ V EAT HDLSNLAWGLA+AG G +++ +++S G G + GE + E G G+S+EG A E DL+ +++ A ++ QRLGEAVL RA+D F F P+ LSRLCWALGAW+ +G V LPG+ +F AR+L+EAGQHPK YTAEELAQ VLW+FATLVG +DSP QELAGL+GALAEGFE+E A G+ AGR GLDAATACDVLWSFA LGHPAHSLCEAMARDL+ V++ LGYTVSLKR FD + DDL SL+PSASANLLWGLVKT AAFADGFDRE LEAVAAD+GPKLLSFSP ELCRTAWALGRLG+GGV+FGG A D G S+DDG +G G E+S LMDKLLGECSKW+E+FTPQELETLLWAVCRLEHRADDLVA MAAE K+RQE LP LL++SGPSAARDAAFHLG+FRHLL KY G+DFDG++ARGRYRRGKS++SRMFRER
Sbjct: 397 TSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLAAMPLRDLANLSWAFAVQRRLHPEMMAGVGREIVSSRA----FGHMAAKDASILAWAYGMLGLRPSRVIEALTREGLATVQEATPHDLSNLAWGLAKAGAGGXXXXXXXVEDPVASAASEDSGSGXXAGKXAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVEQEDCGEGLSEEGXXXXXXXXXXXXXNA-----------------------------------------------------------------TSVETLADLVPGGKKEEASME-------QRLGEAVLARATDSFQHFQPRQLSRLCWALGAWNGRGSVKLPGSDVFVARSLSEAGQHPKEYTAEELAQARRQRRRGGGVVRVLWAFATLVGKADSPAQELAGLVGALAEGFETEGARGMGGGGXXXXVSAAGREGGLDAATACDVLWSFATLGHPAHSLCEAMARDLLSVVER---------------------------------RLDEFTVEEAASALWALGALGYTVSLKRQFDLTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVFFGGP-ATDGGGGDSDDDGPAVDG------GCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1081 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1098.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1098.894.1 >prot_F-serratus_M_contig1098.894.1 ID=prot_F-serratus_M_contig1098.894.1|Name=mRNA_F-serratus_M_contig1098.894.1|organism=Fucus serratus male|type=polypeptide|length=806bp MQPPPTSLGRIEIRPLLLLPMVVAVPASASEAAGGSPALVTSGTDLATAAback to top mRNA from alignment at F-serratus_M_contig1098:116170..133670+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1098.894.1 ID=mRNA_F-serratus_M_contig1098.894.1|Name=mRNA_F-serratus_M_contig1098.894.1|organism=Fucus serratus male|type=mRNA|length=17501bp|location=Sequence derived from alignment at F-serratus_M_contig1098:116170..133670+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1098:116170..133670+ >mRNA_F-serratus_M_contig1098.894.1 ID=mRNA_F-serratus_M_contig1098.894.1|Name=mRNA_F-serratus_M_contig1098.894.1|organism=Fucus serratus male|type=CDS|length=4836bp|location=Sequence derived from alignment at F-serratus_M_contig1098:116170..133670+ (Fucus serratus male)back to top |