mRNA_F-serratus_M_contig1097.882.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1097.882.1
Unique NamemRNA_F-serratus_M_contig1097.882.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1097.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1097contigF-serratus_M_contig1097:17831..23701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928955.1912477-CDS-F-serratus_M_contig1097:17830..179481622928955.1912477-CDS-F-serratus_M_contig1097:17830..17948Fucus serratus maleCDSF-serratus_M_contig1097 17831..17948 +
1690962644.7140813-CDS-F-serratus_M_contig1097:17830..179481690962644.7140813-CDS-F-serratus_M_contig1097:17830..17948Fucus serratus maleCDSF-serratus_M_contig1097 17831..17948 +
1622928955.2274702-CDS-F-serratus_M_contig1097:23525..237011622928955.2274702-CDS-F-serratus_M_contig1097:23525..23701Fucus serratus maleCDSF-serratus_M_contig1097 23526..23701 +
1690962644.725778-CDS-F-serratus_M_contig1097:23525..237011690962644.725778-CDS-F-serratus_M_contig1097:23525..23701Fucus serratus maleCDSF-serratus_M_contig1097 23526..23701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1097.882.1prot_F-serratus_M_contig1097.882.1Fucus serratus malepolypeptideF-serratus_M_contig1097 17831..23701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1097.882.1

>prot_F-serratus_M_contig1097.882.1 ID=prot_F-serratus_M_contig1097.882.1|Name=mRNA_F-serratus_M_contig1097.882.1|organism=Fucus serratus male|type=polypeptide|length=98bp
RCYRRQRRSLLGSCHQSANSGKPISSVMFAGIVAIILPVGLTGGQRDVLS
RGLVSNGAKLLDFPSDPGDSGSRPLPSDLLPDSSRLLMNAAKSSSKRK
back to top

mRNA from alignment at F-serratus_M_contig1097:17831..23701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1097.882.1 ID=mRNA_F-serratus_M_contig1097.882.1|Name=mRNA_F-serratus_M_contig1097.882.1|organism=Fucus serratus male|type=mRNA|length=5871bp|location=Sequence derived from alignment at F-serratus_M_contig1097:17831..23701+ (Fucus serratus male)
CGTTGCTACCGCAGGCAACGTCGAAGTCTCCTTGGATCCTGTCATCAGTC
AGCGAACAGTGGGAAACCGATTTCAAGCGTGATGTTCGCAGGAATAGTGG
CTATCATCTTACCCGTCGGTGAGTGATTGTTGAAGCTGATGTGAGCTAGC
GCCCGAGTGTGCCAGCTTGACCAACGCTTGGCAAGAATATTTCAAATTCA
AAATTGAGAAAGAACTCTCCGGTCGGGACTCAACATAACGATGGACGATT
GGCCGGGCTACCGTCCTTGGGCAGAGTACATAGGCTTGATGGATGTAGCT
TGCCATATTTCATTTCAGATATTTTGGGGAGAAAATCCAGGCTTGCTGGA
CGGCTACAGCCAGGCACCCAAGAGGCGTGCTCCTTATACAGTACTATCAT
ATTAAAACGTTGTTTGCACTCTGCTGCTAGTACAGTACAATATTTCTCCC
CGGTATTATACGGTTGACCCAATGTCACCACCATCGGGAAACCCGTTTAA
ATGCCATGAAGAGGTTTTGTGTTTGCAGCCTATGATCCCACCTAAACGTT
TTGCCATTTTTCCGCCAGACTGGGGGATGCTCAGGAGATAGATGCGTTCA
TGTTTTTCTTTAAAATACTAGACTAATCCGCTCTCTACCTGTACGTAGCA
TATTATTAGTATGGATCAACCGGCTATGGTTACCAATGTTGCGGCTATGA
CGGCGTCCATCCATACCGCCAACCTCCATCGGGTCAGTCCCGAGTCTATC
AGCCCATGCAATTGATTGCCGATGCCATTTACTGCCGAGATCCCGCCGGC
CCAGGACCGCTAGTCCTCAAAGTAGTTCGAGAAACGGGTGCCGCCTTTTC
AGGTAACACCATTTAAACCATTGTTTTGCTCGTCCCTCTTCTCCCACACC
CATCATTAATCAGTAATGGTACGGTGGGTATGTGTGACACAGTTAGTATC
AGAGAAGTAGCTCTAGAGTGGAGGTTTCCGATAGAGTACCAATGGACGCC
GCCGCGGAACTCGGGAGGAATCTCGTAAGTAAGCACCAGATTCAGCCTGA
GTATGGAGAATGAGCCGGCTGACGCGGGATGGGACGGCTGAACCCGTCTC
GCGAGACCAAATTCTCAGGCGCGTACGGGGACAGGTGAATATTCATTTCC
CCTGTTCAGCTGATGACGAGCAGGATTGGCAACCTTACCCGGTCGATCCA
TACTCTGCTATATGTGATGATCATACATACCTGGTACATACATACATATG
AAGCAGGGGGGAGCACAAGGCACTCTGGGCTCAAGTGAGAACTGTACAAG
TAGAGAGAGAGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTTCGTAGTA
AGTATCATTGATCTCCCCTTGGGAGGATCAATACGAGTGGCATATATTGA
CTAGGATGACAGGGCCGGATTGCGCGGTTATGTGCATTTCAATAAATACA
TTTCAATAAATATACATACATACATACATACCACATACATACATACATAC
ATACATACATACATACACGTAGTAATAACCAAGCACTTGGCAACTACCTC
ATCGTATTCCTGCTCAAGTGGGAATTGACAAGACGTTGTCCTACGACATA
TATACATCCCCTATCCCCTGGGTCCTGTGGCATCTGCGGCACACATAGGG
AAGTAGCGTGGTAACGCATATACCCCCAAACGACACCTTTATAGTTTGAG
TGTAGTACCGCCCAAAGAAGTACTGTCTTCATTGTCGAACGTGAGTGGTT
CCGATAGGATGGCACATGTACATGGGGAAGCATACTGTAGTATACTGTAT
TATACTGTCTGTAGCTCTAATAGTTCGTCGCAGTATCGCGATCTCGGACC
CCTGTTGGTCGGTATGAGTAGCGAGTTGTCACCATGATGTGATGTGGCCC
GTTGACCTTCGTACCTCCTCTTGACCACGAGCGGGACTGTTATATTTCAT
GGGTCTAACCATGGCTGACTTTTTATGTCTCACCGAAGCTTCTTTATTCA
GTTGCAAGGACACTATCAATGCACTGATTGTGTGAATCAACAAACATAAC
AACAACATATAGGGGGAAGAGAAGGCGATGTAACCACATATACCTACCTA
AATATAAGTCATATTTCGAAGTATAGTTGGAGAAGGGAAAATTTATATTA
AACACATCGAGCGATGAAAAAAAAAAATGCCTCCCGACGGTAGAGTCAGT
TATCATCGTAGTTCGAAGGGGGTTTTTTAGGAGAATTGGACGGGCAACCT
AGATCGAGAAACAAGGCCTTGTCTCCTGAAAAAGCGGAGTTGAAGACATA
CCAATCGTAGGCTCGAGTCCGAAGCAGCATTTCCCCTTACAATCATATAT
AGTCTGGTATTGGGAACATCCCCAGATCTAGAGGATTTATCTCTGCCAGC
AGGGCTCTCGTAGGCTACTCGTTTTTGATTGGCTTTTATCTTAAAAAAGT
ATGGACCTAGTATTACTTACTCTACGTGTATTGTATTACCGATCCACGTT
GACAAAAGTCAACTGGCCGTTGCACCTGTCAATTGCCAATACCGCTGGTA
TTCTACGGTTTCCAACCCCACAATCCTAGGGGTTTCCAGTATTCATACAG
TACATAGATAACGAAAAGTATAATACAGACGGTGCGTTTATTTTTATTTT
TTTCTCGTCACGGAAAATAAAAACTGACATTTTTTTTTTTTCCCAAAAAA
AGTTGGCTTCAGTAAAGTAAGGTTCAAACCTACGGTGGCGAAAAGCGTCA
ACGGGAGAGCTGTCGAGAGCTGTCACCTGTTGACTTGACACCCACCCCCA
CTAGAGGGATCCGAAAAATTTCGTCGGGTGTGTTCGTAACTACATAGTAA
AGTATGTAGGTGTGGTCACACATATAACAAGAGCATGGATCAACCGGGTA
AGGTTGCCAATACTGTACGTGGTCAGCTAAACAGGAAAAAACAATATTTT
TGTGTCCGTGTTCGCGGCCTGAAATTTGGTCTCGCGAGACGGGTTCGGCA
GTCCCGTCCCGCGTCAGCCTGCTCGTTATCCATACTCAGGTTGAATCTGG
TGCTTACTTACGGGATTCCTCCCGGGTTCGGCGGCGGCGTCCATTTATTT
ATTTAAATTCCCATACGCCATCCGATCAGTCCCGAGTTTATCGGGTCACG
CAATTGCGTACTGATGGCGTTCACTGCCGAGAGTCCGCCGTCTCAGGGCC
AGTAAACCTCAAGGTAGTTCCGAACAAATGCTGCCTTGGCAGATTACCTT
GGACCAATTAATATACGCCTCTCTTTCCCAGACCCATTATTGGTATGAAG
TGGGCATGTTGAAAGTACCGACGATGATATTATCAACGCGGCAGTCGTCG
TCGATGTCTCCATATCCGTTTCGCTGGTTCATGGCTTCTCAAAGGAGGAC
TAAACTCACAACAGCTACCTTAGACCATTGTCTGTCTGTCGGAAAAAGTA
TGAACGGAAAGGGCAGAACGCTGCAGCATGAACTTTTTTAAGGGTGAGGC
TTGTTCTCGAGGAGGCCTCCCAGCGAGACGGGCGCGATCCAATCGACGCC
GCTGAGGGCTTCTGTCTGTCTATCGACTGACTCGATCCTGTTTTTGTCTA
GACTCCACACGAACTATTATATGTGCTACCCTAACCTTTCCGTTTCCCCA
CTCCAAATTACAATATTGTATACATGCTTGTCCAAAATACCTCACTTTTC
ATTTTTCGCCTTTTTTTTTAATGCAAGTGCGGAAAAGAAACAGTAAAACA
AAAATGGGGGAAAAAATGTCTTTTTTCAGAAGCTTCGTTTGGAATTATGC
GGGGAAATAATGAATTTTCGGAAACAATTTTTTTAAACACAAACGAGTGC
TGTGGAGTGTACGGTGTAATAATCTTATCTATTACCTGCTACCTATTGAT
AGCTATTGAGTTGATAGTACTCTAGTAATAGTATTACATGTACGGTCATC
ACATTGGATCAACCGTGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAA
CAGGGAAAACGAATATTCTCCTGCCCCCGTACATGCCTGAGAATTTGGTC
TCGCGAGACGGCTTCAGCCGTCCCGTCCGCGTCAGCCTGCCCATCTCCAT
ACTCAGGCTAATTCTCGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCG
GCGGCGTCCAATTATTTATATTAAACCGCCACACGCCATCGGGTCAGTCC
CGAGTTTATCGGATGGCGTTCACTGCCGAGAGTCTGCCGGCACAGGGCCA
GTAAACCTCAAGGTATTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATG
GACTATGACCAATTAATATGCGCCTCTCTTTTCCCACACCAACTATACTA
TTAGTGGTACAGTATGAAGTATGAAGTGGGCATGTTGAAAGTATACAGTC
ACTCCTTGAAAAAAAGATTAAATAAAAAAAGGTTGCCTCTATTATACCAG
ACAATACAGCATTTAAATAATTTTATTTTTGGTTCGCGGGAATGTTGGCA
AAAAAAAAGGGCAATGGCCAAAAACGGGAGCTCCCGGTGCTTTTTTGGCC
AAAAACGGGTGTACCTGGAAACAATAGCTGCAGAGAGTGTTGTTGGCCGT
ATCTTCTTTTCCCACACCCACTATACTAGTATTGGTATGAAGTAGGCATG
TTGAAAGTAAACAGTCACTCCTTGAGAAAAATATTGAATAAAAAAAGGTT
GCCTCTATTATACCAGACAATACAGCATTAAAATAATTTTATTTTTGGTT
CGCGGGAATGTTGGCAAAAAAAAAGAAGGGAAAAGATTGGCGTTGTGCTG
CTATAGCCATGTAGTCCAGTACATGCTGTACTCATCAGGGCGCGCGTTGA
TGCCAAAACCCCGTTGACATATCTCGTACTATCAATACAAACTGTTTTGT
GTAGTAATCTGTTCGATTGTACAACGGCCTACAGAGAGTAAGTAATACTA
GGGTATCTTATATTACCATGCTGTATCTGCCAAGCAAGCTATTATATTAT
AGGGGGAGGTTACCTCCCGGGGTCTGCTATACTATTAATATATCCTGTAG
AGCATACACTTCATTACATGCTACGTAGGTAGAGGTACTGTTACACGAGT
ACCTGGTACATAAAAGACCCTTTTGCTATATGTGTGACCATACGTACATG
TATATCATAGCTAACTAATTACTGTTGTCTACCTTTACGGACGACCTCGC
CCGGAGTTGACAGCAATGACTCGGTGTGATGTTATGGGGGGAAGCGGGGA
CCGCGCCTATTTACCACACATGGATGATTTTATCGAACCACCACCCAAGC
ACCGCACGCGATGAAAACCTAGGGAAACTACTACCCAGCGCCCCTCCCCC
TTTTTCCCCTTTTTGGCTCTTTTTAGTCCTTCTTGGTTCTACAGCCATCA
CTATGAATTGGGACCGCGCGGTCAGCTGGGGTAGGGGGTCTGGGTTAGCG
TTAGCGATATTGGTCGGGTTGCTCAACCGGAATTGAAAAAAACAAACAGA
AAATGAGCGTCTTGCTGTTTGGTTTGGGTGGTGGTTCGACAAAATCACCC
ATGTGTGGTAAACAGGCGCGCCCGGAAGCGGGGGGAGGGGGTGCTTGTTT
TCTTTCCTTCCAGCACCCACTGCCAGAGACGCCAAATGATAACGCAATGC
CCATCCCCCTGCCCCGAAACTCTTCCTTCCCAAACTTCCTCCCAGGCTTG
ACTGGAGGTCAGCGAGACGTCCTGTCCAGAGGCCTCGTCTCCAATGGAGC
CAAACTGCTGGATTTTCCCTCCGACCCCGGCGACAGCGGCAGCAGACCGT
TGCCTTCTGACCTCTTGCCAGACAGTAGTCGGCTCCTCATGAACGCCGCT
AAGAGTTCATCGAAAAGGAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1097:17831..23701+

>mRNA_F-serratus_M_contig1097.882.1 ID=mRNA_F-serratus_M_contig1097.882.1|Name=mRNA_F-serratus_M_contig1097.882.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1097:17831..23701+ (Fucus serratus male)
CGTTGCTACCGCAGGCAACGTCGAAGTCTCCTTGGATCCTGTCATCAGTC
AGCGAACAGTGGGAAACCGATTTCAAGCGTGATGTTCGCAGGAATAGTGG
CTATCATCTTACCCGTCGCGTTGCTACCGCAGGCAACGTCGAAGTCTCCT
TGGATCCTGTCATCAGTCAGCGAACAGTGGGAAACCGATTTCAAGCGTGA
TGTTCGCAGGAATAGTGGCTATCATCTTACCCGTCGGCTTGACTGGAGGT
CAGCGAGACGTCCTGTCCAGAGGCCTCGTCTCCAATGGAGCCAAACTGCT
GGATTTTCCCTCCGACCCCGGCGACAGCGGCAGCAGACCGTTGCCTTCTG
ACCTCTTGCCAGACAGTAGTCGGCTCCTCATGAACGCCGCTAAGAGTTCA
TCGAAAAGGAAGGCTTGACTGGAGGTCAGCGAGACGTCCTGTCCAGAGGC
CTCGTCTCCAATGGAGCCAAACTGCTGGATTTTCCCTCCGACCCCGGCGA
CAGCGGCAGCAGACCGTTGCCTTCTGACCTCTTGCCAGACAGTAGTCGGC
TCCTCATGAACGCCGCTAAGAGTTCATCGAAAAGGAAG
back to top