mRNA_F-serratus_M_contig1093.858.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1093.858.1
Unique NamemRNA_F-serratus_M_contig1093.858.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1093.858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1093contigF-serratus_M_contig1093:63725..64385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size638
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.527289-CDS-F-serratus_M_contig1093:63725..640521622928948.527289-CDS-F-serratus_M_contig1093:63725..64052Fucus serratus maleCDSF-serratus_M_contig1093 63726..64052 -
1690962641.414783-CDS-F-serratus_M_contig1093:63725..640521690962641.414783-CDS-F-serratus_M_contig1093:63725..64052Fucus serratus maleCDSF-serratus_M_contig1093 63726..64052 -
1622928948.544581-CDS-F-serratus_M_contig1093:64076..643851622928948.544581-CDS-F-serratus_M_contig1093:64076..64385Fucus serratus maleCDSF-serratus_M_contig1093 64077..64385 -
1690962641.4254577-CDS-F-serratus_M_contig1093:64076..643851690962641.4254577-CDS-F-serratus_M_contig1093:64076..64385Fucus serratus maleCDSF-serratus_M_contig1093 64077..64385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1093.858.1prot_F-serratus_M_contig1093.858.1Fucus serratus malepolypeptideF-serratus_M_contig1093 63726..64385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1093.858.1

>prot_F-serratus_M_contig1093.858.1 ID=prot_F-serratus_M_contig1093.858.1|Name=mRNA_F-serratus_M_contig1093.858.1|organism=Fucus serratus male|type=polypeptide|length=212bp
AKGKRGATRHETKAQSKEVMKDSTEEHGKSSEKDSVGEEAQGGTTSDAKT
DAKADSKTDGTANAKADAKEEGEAKADEKAETEAKTNAEAEAKAKAEAEA
RAKAESEANAKVKAAAVAETLAEKRARRLRVSLILKRLRQDADRRRGTVR
YTQSAAMPHPASWMGAEPSHRGMTGAIIAVPGLRDSSDGGDGCGSSGGVS
AEGVSTNGQAGA
back to top

mRNA from alignment at F-serratus_M_contig1093:63725..64385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1093.858.1 ID=mRNA_F-serratus_M_contig1093.858.1|Name=mRNA_F-serratus_M_contig1093.858.1|organism=Fucus serratus male|type=mRNA|length=661bp|location=Sequence derived from alignment at F-serratus_M_contig1093:63725..64385- (Fucus serratus male)
GCCAAGGGTAAGCGTGGGGCGACGAGACATGAAACGAAGGCACAGTCGAA
GGAGGTTATGAAGGATTCGACAGAGGAACACGGGAAAAGTTCAGAGAAGG
ATTCGGTAGGGGAAGAGGCTCAAGGTGGGACGACGTCTGATGCCAAAACC
GATGCCAAAGCTGATTCCAAAACGGATGGAACAGCGAATGCCAAAGCCGA
TGCAAAGGAGGAGGGGGAGGCGAAAGCTGACGAGAAAGCTGAGACAGAAG
CTAAGACAAATGCTGAGGCAGAAGCTAAAGCAAAGGCTGAGGCAGAAGCT
AGGGCGAAGGCTGAAGCAGAAGCCAGGGCGAAGGCTGAATCAGAGGCCAA
CGCAAAGGTCAAGGCGGCGGCGGTCGCGGAGACTTTGGCGGAGAAACGGG
CGCGGCGGCTCCGAGTGTCCCTGATCCTGAAGCGCCTGAGACAAGACGCC
GACCGCAGACGAGGAACGGTTCGCTACACACAGTCTGCTGCGATGCCCCA
TCCCGCCTCCTGGATGGGGGCAGAACCCTCACATAGGGGCATGACCGGGG
CCATCATCGCGGTGCCCGGCCTCCGAGACAGCAGTGACGGGGGTGATGGT
TGTGGCAGCAGCGGGGGAGTCTCTGCGGAAGGGGTTTCGACAAATGGCCA
GGCGGGCGCTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1093:63725..64385-

>mRNA_F-serratus_M_contig1093.858.1 ID=mRNA_F-serratus_M_contig1093.858.1|Name=mRNA_F-serratus_M_contig1093.858.1|organism=Fucus serratus male|type=CDS|length=1272bp|location=Sequence derived from alignment at F-serratus_M_contig1093:63725..64385- (Fucus serratus male)
GCCAAGGGTAAGCGTGGGGCGACGAGACATGAAACGAAGGCACAGTCGAA
GGAGGTTATGAAGGATTCGACAGAGGAACACGGGAAAAGTTCAGAGAAGG
ATTCGGTAGGGGAAGAGGCTCAAGGTGGGACGACGTCTGATGCCAAAACC
GATGCCAAAGCTGATTCCAAAACGGATGGAACAGCGAATGCCAAAGCCGA
TGCAAAGGAGGAGGGGGAGGCGAAAGCTGACGAGAAAGCTGAGACAGAAG
CTAAGACAAATGCTGAGGCAGAAGCTAAAGCAAAGGCTGAGGCAGAAGCT
AGGGCGAAGGCCAAGGGTAAGCGTGGGGCGACGAGACATGAAACGAAGGC
ACAGTCGAAGGAGGTTATGAAGGATTCGACAGAGGAACACGGGAAAAGTT
CAGAGAAGGATTCGGTAGGGGAAGAGGCTCAAGGTGGGACGACGTCTGAT
GCCAAAACCGATGCCAAAGCTGATTCCAAAACGGATGGAACAGCGAATGC
CAAAGCCGATGCAAAGGAGGAGGGGGAGGCGAAAGCTGACGAGAAAGCTG
AGACAGAAGCTAAGACAAATGCTGAGGCAGAAGCTAAAGCAAAGGCTGAG
GCAGAAGCTAGGGCGAAGGCTGAATCAGAGGCCAACGCAAAGGTCAAGGC
GGCGGCGGTCGCGGAGACTTTGGCGGAGAAACGGGCGCGGCGGCTCCGAG
TGTCCCTGATCCTGAAGCGCCTGAGACAAGACGCCGACCGCAGACGAGGA
ACGGTTCGCTACACACAGTCTGCTGCGATGCCCCATCCCGCCTCCTGGAT
GGGGGCAGAACCCTCACATAGGGGCATGACCGGGGCCATCATCGCGGTGC
CCGGCCTCCGAGACAGCAGTGACGGGGGTGATGGTTGTGGCAGCAGCGGG
GGAGTCTCTGCGGAAGGGGTTTCGACAAATGGCCAGGCGGGCGCTGCTGA
ATCAGAGGCCAACGCAAAGGTCAAGGCGGCGGCGGTCGCGGAGACTTTGG
CGGAGAAACGGGCGCGGCGGCTCCGAGTGTCCCTGATCCTGAAGCGCCTG
AGACAAGACGCCGACCGCAGACGAGGAACGGTTCGCTACACACAGTCTGC
TGCGATGCCCCATCCCGCCTCCTGGATGGGGGCAGAACCCTCACATAGGG
GCATGACCGGGGCCATCATCGCGGTGCCCGGCCTCCGAGACAGCAGTGAC
GGGGGTGATGGTTGTGGCAGCAGCGGGGGAGTCTCTGCGGAAGGGGTTTC
GACAAATGGCCAGGCGGGCGCT
back to top