mRNA_F-serratus_M_contig1093.857.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1093.857.1
Unique NamemRNA_F-serratus_M_contig1093.857.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1093.857.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.800e-28
Identity = 70/143 (48.95%), Postives = 86/143 (60.14%), Query Frame = -2 
Query:    3 GQAGAAGKNGVENRADETNWPPLGVRRLKAGLDRARRADAQARRPGS---------RAASIGKKPE---CRAAASWLEVKLARMRKVEDGESRAWQRRIVEEQNSYPGEAAGPPFPYGFVPRLAHRALGAYSLVRTLSRPLRI 395
            G    AG    E  A    +PPLG RRL+  L  ARR  A A+ PG          +A +  + P    C   +SWL  +LARMR++E  E  AWQRR+ EE+ S PGEAAGPP P+GFVPRL HRALGAY+L+RT SRP R+
Sbjct: 1717 GSGEGAGGGPAEKDAGAAGYPPLGQRRLQRRLGCARRHAALAQHPGGAGLRLSTLLKADAPAEDPSRGGCAGGSSWLGARLARMRRIEGEEWAAWQRRVGEEEASNPGEAAGPPLPFGFVPRLVHRALGAYALIRTFSRPFRL 1859
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BLAST of mRNA_F-serratus_M_contig1093.857.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 7.120e-28
Identity = 70/138 (50.72%), Postives = 85/138 (61.59%), Query Frame = -2 
Query:    3 AGKNGVENRADETNWPPLGVRRLKAGLDRARRADAQARRPGS---------RAASIGKKPE---CRAAASWLEVKLARMRKVEDGESRAWQRRIVEEQNSYPGEAAGPPFPYGFVPRLAHRALGAYSLVRTLSRPLRI 380
            AG    E  A  +  PPLG RRL+  L  ARR  A A+ PG          +A +  + P    C   +SWL  +LARMR+VE  E  AWQRR+ EE+ S PGEAAGPP P+GFVPRL HRALGAY+L+RT SRP R+
Sbjct: 1325 AGGGPAEKGAGASGCPPLGQRRLQRRLGCARRHAALAQHPGGAGLRLSTLLKADAPAEDPSRGGCAGGSSWLGARLARMRRVEGEEWAAWQRRVGEEEASNPGEAAGPPLPFGFVPRLVHRALGAYALIRTFSRPFRL 1462
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1093.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE2.800e-2848.95PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FZH6_ECTSI7.120e-2850.72WD repeat domain-containing protein, putative n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1093contigF-serratus_M_contig1093:63346..63758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size415
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.6691926-CDS-F-serratus_M_contig1093:63345..637561622928948.6691926-CDS-F-serratus_M_contig1093:63345..63756Fucus serratus maleCDSF-serratus_M_contig1093 63346..63756 +
1690962641.4531145-CDS-F-serratus_M_contig1093:63345..637561690962641.4531145-CDS-F-serratus_M_contig1093:63345..63756Fucus serratus maleCDSF-serratus_M_contig1093 63346..63756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1093.857.1prot_F-serratus_M_contig1093.857.1Fucus serratus malepolypeptideF-serratus_M_contig1093 63346..63756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1093.857.1

>prot_F-serratus_M_contig1093.857.1 ID=prot_F-serratus_M_contig1093.857.1|Name=mRNA_F-serratus_M_contig1093.857.1|organism=Fucus serratus male|type=polypeptide|length=137bp
VIRSGRLSVLTKEYAPRARWARRGTKPYGNGGPAASPGYEFCSSTIRRCH
ALDSPSSTFRILASFTSSQLAAALHSGFFPMEAARLPGRLACASALLARS
SPALRRRTPRGGQFVSSARFSTPFLPAAPAWPFVETP
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mRNA from alignment at F-serratus_M_contig1093:63346..63758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1093.857.1 ID=mRNA_F-serratus_M_contig1093.857.1|Name=mRNA_F-serratus_M_contig1093.857.1|organism=Fucus serratus male|type=mRNA|length=413bp|location=Sequence derived from alignment at F-serratus_M_contig1093:63346..63758+ (Fucus serratus male)
GTGATCCGGAGCGGACGGCTGAGCGTCCTCACTAAAGAATACGCCCCTAG
GGCTCGATGGGCCAGGCGAGGAACGAAACCGTACGGGAACGGCGGACCCG
CCGCCTCTCCCGGGTACGAATTCTGCTCCTCCACGATCCGACGCTGCCAC
GCCCTCGACTCTCCGTCCTCGACCTTCCGCATTCTCGCGAGCTTCACCTC
CAGCCAGCTCGCCGCGGCCCTACACTCAGGCTTTTTCCCTATGGAGGCCG
CGCGGCTGCCGGGGCGCCTCGCCTGCGCGTCGGCCCTCCTCGCGCGGTCT
AGCCCGGCCTTGAGGCGGCGTACACCGAGGGGAGGCCAATTCGTCTCGTC
TGCTCGGTTCTCAACGCCGTTTTTACCAGCAGCGCCCGCCTGGCCATTTG
TCGAAACCCCTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1093:63346..63758+

>mRNA_F-serratus_M_contig1093.857.1 ID=mRNA_F-serratus_M_contig1093.857.1|Name=mRNA_F-serratus_M_contig1093.857.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig1093:63346..63758+ (Fucus serratus male)
GTGATCCGGAGCGGACGGCTGAGCGTCCTCACTAAAGAATACGCCCCTAG
GGCTCGATGGGCCAGGCGAGGAACGAAACCGTACGGGAACGGCGGACCCG
CCGCCTCTCCCGGGTACGAATTCTGCTCCTCCACGATCCGACGCTGCCAC
GCCCTCGACTCTCCGTCCTCGACCTTCCGCATTCTCGCGAGCTTCACCTC
CAGCCAGCTCGCCGCGGCCCTACACTCAGGCTTTTTCCCTATGGAGGCCG
CGCGGCTGCCGGGGCGCCTCGCCTGCGCGTCGGCCCTCCTCGCGCGGTCT
AGCCCGGCCTTGAGGCGGCGTACACCGAGGGGAGGCCAATTCGTCTCGTC
TGCTCGGTTCTCAACGCCGTTTTTACCAGCAGCGCCCGCCTGGCCATTTG
TCGAAACCCCTGTGATCCGGAGCGGACGGCTGAGCGTCCTCACTAAAGAA
TACGCCCCTAGGGCTCGATGGGCCAGGCGAGGAACGAAACCGTACGGGAA
CGGCGGACCCGCCGCCTCTCCCGGGTACGAATTCTGCTCCTCCACGATCC
GACGCTGCCACGCCCTCGACTCTCCGTCCTCGACCTTCCGCATTCTCGCG
AGCTTCACCTCCAGCCAGCTCGCCGCGGCCCTACACTCAGGCTTTTTCCC
TATGGAGGCCGCGCGGCTGCCGGGGCGCCTCGCCTGCGCGTCGGCCCTCC
TCGCGCGGTCTAGCCCGGCCTTGAGGCGGCGTACACCGAGGGGAGGCCAA
TTCGTCTCGTCTGCTCGGTTCTCAACGCCGTTTTTACCAGCAGCGCCCGC
CTGGCCATTTGTCGAAACCCCT
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