mRNA_F-serratus_M_contig1093.853.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1093.853.1
Unique NamemRNA_F-serratus_M_contig1093.853.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1093.853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1093contigF-serratus_M_contig1093:22459..23630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.202298-CDS-F-serratus_M_contig1093:22458..227221622928948.202298-CDS-F-serratus_M_contig1093:22458..22722Fucus serratus maleCDSF-serratus_M_contig1093 22459..22722 -
1690962641.2205284-CDS-F-serratus_M_contig1093:22458..227221690962641.2205284-CDS-F-serratus_M_contig1093:22458..22722Fucus serratus maleCDSF-serratus_M_contig1093 22459..22722 -
1622928948.2149334-CDS-F-serratus_M_contig1093:23573..236301622928948.2149334-CDS-F-serratus_M_contig1093:23573..23630Fucus serratus maleCDSF-serratus_M_contig1093 23574..23630 -
1690962641.2303452-CDS-F-serratus_M_contig1093:23573..236301690962641.2303452-CDS-F-serratus_M_contig1093:23573..23630Fucus serratus maleCDSF-serratus_M_contig1093 23574..23630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1093.853.1prot_F-serratus_M_contig1093.853.1Fucus serratus malepolypeptideF-serratus_M_contig1093 22459..23630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1093.853.1

>prot_F-serratus_M_contig1093.853.1 ID=prot_F-serratus_M_contig1093.853.1|Name=mRNA_F-serratus_M_contig1093.853.1|organism=Fucus serratus male|type=polypeptide|length=107bp
GRRGVINLPGAIAFSSPRKMKHGEAAAVASFLALWALLATASGRGPLVAV
TPSTRQFIVQAFATSSPFGHHPILGRAWRSHKAGSDAVGRRPARRGRLQT
YAPKAFP
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mRNA from alignment at F-serratus_M_contig1093:22459..23630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1093.853.1 ID=mRNA_F-serratus_M_contig1093.853.1|Name=mRNA_F-serratus_M_contig1093.853.1|organism=Fucus serratus male|type=mRNA|length=1172bp|location=Sequence derived from alignment at F-serratus_M_contig1093:22459..23630- (Fucus serratus male)
GGCCGCAGGGGCGTCATAAACCTACCCGGGGCGATCGCCTTTTCTTCGCC
CCGAAAGGTCCGTTGGCTTCTGTGCGTTCACACAGCTTTCGTGCCCTTTT
CGGCGGTCGGTTTTCCCTACCCGAGGCGTGCGGCCTATCCCTCTGCCTGT
AACGCGGTTTCGCCTTAGGCCCTCTTAATATGAAGGACTCTCAAAGAGAT
CATCACGAGGTACAGCAGGGGGGGGGGGGGGGCAGCGAACTCCCCGGTCG
GTGTTCCGGCCTTGTCGGCGTCCACCGCATCGAAAAGTGACGCGACGTTA
AAAGAGCGGGGTTGAGTACCAGCGGTGCATTTAGATCGAATATGTATAAT
GACGGATATGTGCCGTGGCGGGAGAGGGAGTAAGTCCCGCGATACTCCTT
GTGCTGAATTTTTCTCACTCCATTAATTAGTCGCCTTCCCATCACGGGGC
GAACAATTTCAATCAGTAGTGCCCACGTCATTTTGCAAATTAACATGAAA
TAGAATTTTCTGTCTTCTTCCAGCAAGGGGAGGGTGAACGGAACGCTCCG
CCGTGCCCGCCCCCCCCACCTCCTCTTCCTTGATACCCGACCATATTTCA
TGTGTCGTGATTGTGCGCTACGATTGGTCGCCGGAAAAGCGCGGCCAAGC
CAGGCACGGTCGAGGCCAGAGGCCAGAGACCAGCCCCCGTCGGTCGGAGC
GCACTCTTTTCCCCCCATTATCCATCATGTCTCTCCGTACAAATACCCAT
TTTCAGACGAACAGGGGCGACACGATGGTCGAGAGGGAGCAAACGCAACG
GATGACGAACGAAGACACGTACCATGCAACCGAATTTTTCATCTCCGCCC
TTACTCCCACCGCCCTTCTCCTCTCCACAACTCCTTTTACGCGTTCTTCC
TATTACAGATGAAACACGGTGAGGCAGCAGCGGTGGCGTCTTTCCTCGCC
CTATGGGCATTGCTGGCGACCGCAAGCGGGAGAGGCCCTCTTGTTGCGGT
GACACCCAGCACTCGCCAATTTATCGTGCAGGCTTTCGCTACCTCTTCCC
CTTTCGGGCACCACCCCATTCTCGGCCGCGCGTGGCGGTCTCACAAGGCG
GGGTCGGACGCGGTCGGACGGCGGCCGGCGAGGCGAGGGCGGCTGCAAAC
GTACGCCCCGAAAGCGTTTCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1093:22459..23630-

>mRNA_F-serratus_M_contig1093.853.1 ID=mRNA_F-serratus_M_contig1093.853.1|Name=mRNA_F-serratus_M_contig1093.853.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig1093:22459..23630- (Fucus serratus male)
GGCCGCAGGGGCGTCATAAACCTACCCGGGGCGATCGCCTTTTCTTCGCC
CCGAAAGGGCCGCAGGGGCGTCATAAACCTACCCGGGGCGATCGCCTTTT
CTTCGCCCCGAAAGATGAAACACGGTGAGGCAGCAGCGGTGGCGTCTTTC
CTCGCCCTATGGGCATTGCTGGCGACCGCAAGCGGGAGAGGCCCTCTTGT
TGCGGTGACACCCAGCACTCGCCAATTTATCGTGCAGGCTTTCGCTACCT
CTTCCCCTTTCGGGCACCACCCCATTCTCGGCCGCGCGTGGCGGTCTCAC
AAGGCGGGGTCGGACGCGGTCGGACGGCGGCCGGCGAGGCGAGGGCGGCT
GCAAACGTACGCCCCGAAAGCGTTTCCGATGAAACACGGTGAGGCAGCAG
CGGTGGCGTCTTTCCTCGCCCTATGGGCATTGCTGGCGACCGCAAGCGGG
AGAGGCCCTCTTGTTGCGGTGACACCCAGCACTCGCCAATTTATCGTGCA
GGCTTTCGCTACCTCTTCCCCTTTCGGGCACCACCCCATTCTCGGCCGCG
CGTGGCGGTCTCACAAGGCGGGGTCGGACGCGGTCGGACGGCGGCCGGCG
AGGCGAGGGCGGCTGCAAACGTACGCCCCGAAAGCGTTTCCG
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