mRNA_F-serratus_M_contig1093.852.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1093.852.1
Unique NamemRNA_F-serratus_M_contig1093.852.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1093.852.1 vs. uniprot
Match: D7FZH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH7_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 3.350e-105
Identity = 195/373 (52.28%), Postives = 249/373 (66.76%), Query Frame = 1 
Query:   70 SETREERCVRRLDVAVRRVFAAYYTCSDLREAQEPLRAFLLEAMAALEAGESSGR--------IASLLKESLLRNSQRLDYHLDGDLPMVLYRLWLRGRAIDVYERDLFHCPRWLALISETKTQMEAALHLQQRDGDRVGTICYPNGDIFEGKVNTLARRAQDDGTPPIYGGSNAAAPALADGALDAEFIS-LDRT-DLPPFSSSPFAGNGGGSSLVVEPDVTTVEGLVALTIDCLRDGLSDEAAIFQRHMKSPEFGNPLLRLALPSSDDVPEFPHIANEDEDERDPAIAAAEAELTEEHLKLGERGTKELVHDRRRSQLDVYLICEAFRALRGEGHEAGAAGLGADSEGSWQLSDEDARTLDQMLNDAAAID 1158
            +E  E+RC+RRLD+AVRRVFA YY+C+D+RE  E L  FL EA AALE   S+ R        +AS LK  LL+ + RL+YHLDGD PMVLYRLW RGR IDVY+RDL +CPRW+ L++ETK QM+    + + +   +GTICYP+GDIFEG V++L R A+  G  P+   S    P  A   +DAE  S  D T        S   G+GGG+   V  DV TV GLV+LTI CL +G+SDEA I QRH++SP+FG+PLLRLA PS ++ P+ PH+   D+ E +P +  AE ELTEEHL LGERG KEL+HDRRR+QLDVYLIC A+R    E  +A        S G W L++ED R LD+M+ +AAA+D
Sbjct:  158 TEEAEDRCIRRLDLAVRRVFADYYSCTDVRETTESLGVFLKEATAALELDCSTSRSGSVFPAHLASRLKARLLQTADRLNYHLDGDKPMVLYRLWNRGRPIDVYDRDLLNCPRWIELVAETKRQMDNPPVVVEGE---IGTICYPSGDIFEGHVDSLIRTAKA-GEVPLAAASYP--PQNARPFVDAELSSSADATASSRGLEGSSSGGDGGGA---VTQDVRTVSGLVSLTIACLEEGMSDEATILQRHLQSPDFGHPLLRLASPSGNE-PDHPHLP--DDPEMNPELLRAEEELTEEHLALGERGAKELMHDRRRAQLDVYLICAAYRRNLPEVDDAA-------SRGGWHLNEEDGRILDEMIREAAAMD 511
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1093.852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZH7_ECTSI3.350e-10552.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1093contigF-serratus_M_contig1093:18652..22434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002810.1
Exons6
Model size1581
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1093.852.1prot_F-serratus_M_contig1093.852.1Fucus serratus malepolypeptideF-serratus_M_contig1093 19069..22413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.0541468-UTR-F-serratus_M_contig1093:18651..190681622928949.0541468-UTR-F-serratus_M_contig1093:18651..19068Fucus serratus maleUTRF-serratus_M_contig1093 18652..19068 -
1690962641.6714323-UTR-F-serratus_M_contig1093:18651..190681690962641.6714323-UTR-F-serratus_M_contig1093:18651..19068Fucus serratus maleUTRF-serratus_M_contig1093 18652..19068 -
1622928949.1548228-UTR-F-serratus_M_contig1093:22413..224341622928949.1548228-UTR-F-serratus_M_contig1093:22413..22434Fucus serratus maleUTRF-serratus_M_contig1093 22414..22434 -
1690962641.7405922-UTR-F-serratus_M_contig1093:22413..224341690962641.7405922-UTR-F-serratus_M_contig1093:22413..22434Fucus serratus maleUTRF-serratus_M_contig1093 22414..22434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.0718718-CDS-F-serratus_M_contig1093:19068..193411622928949.0718718-CDS-F-serratus_M_contig1093:19068..19341Fucus serratus maleCDSF-serratus_M_contig1093 19069..19341 -
1690962641.6825323-CDS-F-serratus_M_contig1093:19068..193411690962641.6825323-CDS-F-serratus_M_contig1093:19068..19341Fucus serratus maleCDSF-serratus_M_contig1093 19069..19341 -
1622928949.0876062-CDS-F-serratus_M_contig1093:19863..202501622928949.0876062-CDS-F-serratus_M_contig1093:19863..20250Fucus serratus maleCDSF-serratus_M_contig1093 19864..20250 -
1690962641.692557-CDS-F-serratus_M_contig1093:19863..202501690962641.692557-CDS-F-serratus_M_contig1093:19863..20250Fucus serratus maleCDSF-serratus_M_contig1093 19864..20250 -
1622928949.0997849-CDS-F-serratus_M_contig1093:20426..205131622928949.0997849-CDS-F-serratus_M_contig1093:20426..20513Fucus serratus maleCDSF-serratus_M_contig1093 20427..20513 -
1690962641.7046854-CDS-F-serratus_M_contig1093:20426..205131690962641.7046854-CDS-F-serratus_M_contig1093:20426..20513Fucus serratus maleCDSF-serratus_M_contig1093 20427..20513 -
1622928949.110309-CDS-F-serratus_M_contig1093:21044..211261622928949.110309-CDS-F-serratus_M_contig1093:21044..21126Fucus serratus maleCDSF-serratus_M_contig1093 21045..21126 -
1690962641.7165594-CDS-F-serratus_M_contig1093:21044..211261690962641.7165594-CDS-F-serratus_M_contig1093:21044..21126Fucus serratus maleCDSF-serratus_M_contig1093 21045..21126 -
1622928949.125061-CDS-F-serratus_M_contig1093:21662..218831622928949.125061-CDS-F-serratus_M_contig1093:21662..21883Fucus serratus maleCDSF-serratus_M_contig1093 21663..21883 -
1690962641.7255933-CDS-F-serratus_M_contig1093:21662..218831690962641.7255933-CDS-F-serratus_M_contig1093:21662..21883Fucus serratus maleCDSF-serratus_M_contig1093 21663..21883 -
1622928949.1418147-CDS-F-serratus_M_contig1093:22320..224131622928949.1418147-CDS-F-serratus_M_contig1093:22320..22413Fucus serratus maleCDSF-serratus_M_contig1093 22321..22413 -
1690962641.7328773-CDS-F-serratus_M_contig1093:22320..224131690962641.7328773-CDS-F-serratus_M_contig1093:22320..22413Fucus serratus maleCDSF-serratus_M_contig1093 22321..22413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1093.852.1

>prot_F-serratus_M_contig1093.852.1 ID=prot_F-serratus_M_contig1093.852.1|Name=mRNA_F-serratus_M_contig1093.852.1|organism=Fucus serratus male|type=polypeptide|length=381bp
MTANDSAGGGSNKARDSETREERCVRRLDVAVRRVFAAYYTCSDLREAQE
PLRAFLLEAMAALEAGESSGRIASLLKESLLRNSQRLDYHLDGDLPMVLY
RLWLRGRAIDVYERDLFHCPRWLALISETKTQMEAALHLQQRDGDRVGTI
CYPNGDIFEGKVNTLARRAQDDGTPPIYGGSNAAAPALADGALDAEFISL
DRTDLPPFSSSPFAGNGGGSSLVVEPDVTTVEGLVALTIDCLRDGLSDEA
AIFQRHMKSPEFGNPLLRLALPSSDDVPEFPHIANEDEDERDPAIAAAEA
ELTEEHLKLGERGTKELVHDRRRSQLDVYLICEAFRALRGEGHEAGAAGL
GADSEGSWQLSDEDARTLDQMLNDAAAIDP*
back to top

mRNA from alignment at F-serratus_M_contig1093:18652..22434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1093.852.1 ID=mRNA_F-serratus_M_contig1093.852.1|Name=mRNA_F-serratus_M_contig1093.852.1|organism=Fucus serratus male|type=mRNA|length=3783bp|location=Sequence derived from alignment at F-serratus_M_contig1093:18652..22434- (Fucus serratus male)
AGGGAACAGTGCGTCGCAGCCATGACTGCGAATGACTCGGCTGGGGGCGG
GAGCAATAAAGCGCGTGATTCAGAGACACGCGAGGAGAGGTGTGTTCGTC
GATTGGATGTTGCGGTGAGTGAGTGGCCCGTCACGACGTGCAATGCCCGC
GATCCGCCCACGGTCAATCGGCGCGGAATAGCCCAGCGCGCAGCGGAGCA
CAGTCCGCCGCCACTTCAAAACAGTACCATTTCCAGCGCTCGTTTTTTAT
TTTGAGCCTCTGGAGGGAAGGTTAAGTACATCAATATGTTCGTGTTCAGC
TCGAGAGAAAATTTGGCCGCGGCGGTAAGAGTGCTCGGAGCGAGCGAGCA
AGCGAGAAAAAGCGTTCGCAGTCTGTTCTCAAGTGACTACGAGACGCCCG
CGTTTTTAATCGGCGCTCCCGCGCGCGTCTATACAGACATTAGCTGTAGC
GAGCGCGCACACACGCACCCCGCTCGCACCCAGAACCCGTGCAGAACCCG
CTCCGTCCATCTCTTCCCGCCGAAATAACAAATATTACTTATATTACACA
GGTGCGAAGAGTTTTCGCGGCGTACTACACGTGCAGTGACCTGCGCGAAG
CTCAGGAGCCGCTGAGAGCATTCCTGTTGGAAGCGATGGCGGCGCTAGAG
GCTGGCGAGAGCTCCGGGCGTATCGCCTCCCTCCTGAAAGAAAGCCTGCT
TCGGAACTCCCAGCGCTTGGACTACCACCTCGACGGCGACCTTCCGATGG
TGCTGTACCGACTTTGGCTGCGGTGGGTCTGCTCTCGCTCCCGGCGGGTT
GCTACGTGGCACCGCCGCGGTTTTCACTACCATTCCATATATTTGTAAAC
GGGGATCTCAGGCTGTTCCCGAACGCTTTTTCTCACGGGCGATATCGTTA
CCATTTGACCTCAGCTTGGATGTAGAAAATTTGTTTGTTTGTTTTGTTGC
GTCGTCAACCTTTTATGCTATGATGACGTTTTTTTGTTGGGGTTTCCCCC
CGTCATCCACGCCATCATCTTGAACCGTATCATTATCGGAGGACTGGACT
GTTACGGCATCCTTCTCACTACGTATCACTTTGTTATATATATATAAAGA
ACAAGAGGACGCTTCGACGATCGAAGTCAACCAATCATATCTCATCATCC
GGGAGAAAGAGGCCTGGAGACGAGAGCCCTCTTCTGTCTGGTCGTGAGTA
TCTGAAAATATATATATATATATATATTATATATATTTAATATCTCCCTC
GAATTCTTCTCTCTCCTTTTCTTTTTTGTTTGCACGACTCGCTACTCAAC
CGTTTCAGGGGGCGCGCCATCGACGTGTACGAGCGGGATTTGTTCCACTG
CCCGCGGTGGCTAGCGCTAATCTCCGAAACCAAAACGCAGGTTTAGTTCT
GCCTTTTTTTTCGCCTGTGACTGACTTTTTTTTCTTTTTCTTTTTCTTTT
TCTGTCTCGCAGCAGAGCTTGATGTTCCGCTCTCTTTTTTAGTTCTAGAG
CTATGGCTTTCACCCACAGCCCTACAAGTTGCAAAACTTACGGGATGGAT
CGAGTCGGCTGTCGATCCCGCTTGAGGCATCCAAAGTACTTATTATTATT
AGTATTGTATAGCAAGAATATCGATTCAAGAAAGGCCAAGCATTTCCCAA
CGCCACAATGGAAGGCGGCCATCGTGTAAAGAATGAGAACCGCGCGCGAG
CGAAGGGTTGAGCGCGCCTCCCTCTCGAACGCTGCCCGAATGTGCTGCAA
CCACTACGCCCCCGATGTTTTATTTATTTATTTATTTATTTGGGGGGGGG
GGGGAACGGGGTTTCATGCTGTTGTTGCTGTTCTGCATATATTTTCTACG
CCTGGTGTGCTTTGGAGCGCGCGCATTTTTTTTTTGCCTGATTACTCTAT
GTTGTGTAAAATAAATTTCAGATGGAAGCCGCTCTTCACCTGCAGCAGAG
GGACGGCGATCGCGTGGGGACTATATGTTACCCGAACGGGGACATTTTCG
AGGGAAAGGTACGAACAGGTTTTTCGGGGGACCTTTGGACGGCGTCTGTT
GGCACTTTGATTCCGCTCCCCACTCACCGCGCGGGGCTACCGCGCGACCA
TGACAGCGGTTGGCCGTTTTCCGACGCAAGGGGTTGGCCCCTGCCTCCCT
ATTTTCTCCCCCCTCCATAAACCGCCTCCCTTAGGTGAACACCCTCGCGC
GGCGCGCACAAGATGATGGAACTCCTCCCATCTACGGCGGAAGCAATGCT
GCCGCCCCTGCTCTGGCGGATGGCGCGTTGGACGCTGAGTTCATCTCACT
GGACCGTACCGATCTCCCTCCTTTCTCATCCTCTCCATTCGCCGGGAACG
GCGGCGGTTCTTCGCTCGTCGTCGAGCCTGATGTCACTACTGTCGAGGGG
CTCGTGGCCCTGACGATAGACTGCCTGAGGGACGGGCTCTCGGACGAGGC
CGCCATCTTCCAGCGTCACATGAAGAGCCCAGAGTTTGGCAACCCGCTGC
TGAGGCTGGCGTTGCCGTCCTCCGACGACGTGCCCGAGTTCCCGCACATC
GCCAACGAGGACGAAGACGAGGTAGCAGATCGTCCTTTTGTTTTAAAGAG
AGATTTTGAGTTTCGCGTCCGGAACCGGTTCCAGGCAGGGCAGGGAAGGG
AAGAGGGGCAGGGAGAAGGGAGGGTTTCGGTTACGCTTGCCGGCGTCGCT
TGTTCGTCTCGTCTTTGTCTACCTCAAAAGTACGATGTCCGTAAGTGGTG
GTTATTGCGATCGCGGTATGTGTGATCGTAGAAGTATTTTCCCGTCTTGA
TGTCATCCCTCTTGTCTTGCCTTCCGCAGCATGGTATGGGCCGAAATGAT
TTCGTCTCACGCTTCCTCCTTCTCCCTCTCCTCCTTGCAGTGCTTTGTCG
GGAACGTCCCCCGGGTAGTGCCCGCTTGCCTTGTTATGGCATAACTCCCT
GGAGCTGCAGTTTGAGTGCTCCCCAAGCCCTCCTTTCCCCGCCCCCCCGA
TGCTTGTACTGCTACAGAGTAGTAACCTTCGACGGCTCATCAGTAGAGAA
ACTCCCGTTGTTGCGCGTCTCTTGCTCCTTCCTTCCCCACCAGAGAGATC
CCGCCATTGCGGCGGCTGAGGCGGAGCTGACCGAGGAACACCTCAAGCTG
GGGGAGAGAGGCACGAAGGAGCTCGTGCACGACCGCCGCCGTTCGCAGCT
TGACGTGTACCTGATATGCGAGGCCTTTAGGGCGCTACGGGGGGAAGGGC
ATGAGGCGGGGGCTGCGGGTTTGGGAGCAGATAGCGAAGGTAGTTGGCAG
CTCAGCGACGAGGACGCTCGTACTCTAGACCAAATGCTGAACGATGCCGC
CGCCATCGATCCGTGAGCTGTCGTTATGCTGTTCGTGTGTGTTGGTGTTG
CGATTGCGCGCAGATGCATGCGTGTGCGCGTGTCCGCCGTTGTCACGGTG
ATCCAAAAACGTGAAAAATAACAAATAATATACCATGGTACAGTATTTCG
TTTATATATGTGTTTGAGTTAAACTCCTGGCTGTTGAGGTTACGAATTAC
GACAAAAAAACGGAACGCGTTTGCATTACGGCATGTGCGTGTGTGTGTGT
TGTGTTGTCATCCCATTTATTCTGGACGTCAGACGTGTCGATGCACCAGC
CGGGGTCACATACAATTTCTCCGCCGTCCTTCTTCTGCGGTGCTTGCCTT
AATTTTTCTCGCGAGGAGGATGATTCAGCCGTCCCTTCCCCCGTCGATGG
TGGTGAAGTCGAATTTTGTGTACGTACGAATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1093:18652..22434-

>mRNA_F-serratus_M_contig1093.852.1 ID=mRNA_F-serratus_M_contig1093.852.1|Name=mRNA_F-serratus_M_contig1093.852.1|organism=Fucus serratus male|type=CDS|length=2286bp|location=Sequence derived from alignment at F-serratus_M_contig1093:18652..22434- (Fucus serratus male)
ATGACTGCGAATGACTCGGCTGGGGGCGGGAGCAATAAAGCGCGTGATTC
AGAGACACGCGAGGAGAGGTGTGTTCGTCGATTGGATGTTGCGATGACTG
CGAATGACTCGGCTGGGGGCGGGAGCAATAAAGCGCGTGATTCAGAGACA
CGCGAGGAGAGGTGTGTTCGTCGATTGGATGTTGCGGTGCGAAGAGTTTT
CGCGGCGTACTACACGTGCAGTGACCTGCGCGAAGCTCAGGAGCCGCTGA
GAGCATTCCTGTTGGAAGCGATGGCGGCGCTAGAGGCTGGCGAGAGCTCC
GGGCGTATCGCCTCCCTCCTGAAAGAAAGCCTGCTTCGGAACTCCCAGCG
CTTGGACTACCACCTCGACGGCGACCTTCCGATGGTGCTGTACCGACTTT
GGCTGCGGTGCGAAGAGTTTTCGCGGCGTACTACACGTGCAGTGACCTGC
GCGAAGCTCAGGAGCCGCTGAGAGCATTCCTGTTGGAAGCGATGGCGGCG
CTAGAGGCTGGCGAGAGCTCCGGGCGTATCGCCTCCCTCCTGAAAGAAAG
CCTGCTTCGGAACTCCCAGCGCTTGGACTACCACCTCGACGGCGACCTTC
CGATGGTGCTGTACCGACTTTGGCTGCGGGGGCGCGCCATCGACGTGTAC
GAGCGGGATTTGTTCCACTGCCCGCGGTGGCTAGCGCTAATCTCCGAAAC
CAAAACGCAGGGGGCGCGCCATCGACGTGTACGAGCGGGATTTGTTCCAC
TGCCCGCGGTGGCTAGCGCTAATCTCCGAAACCAAAACGCAGATGGAAGC
CGCTCTTCACCTGCAGCAGAGGGACGGCGATCGCGTGGGGACTATATGTT
ACCCGAACGGGGACATTTTCGAGGGAAAGATGGAAGCCGCTCTTCACCTG
CAGCAGAGGGACGGCGATCGCGTGGGGACTATATGTTACCCGAACGGGGA
CATTTTCGAGGGAAAGGTGAACACCCTCGCGCGGCGCGCACAAGATGATG
GAACTCCTCCCATCTACGGCGGAAGCAATGCTGCCGCCCCTGCTCTGGCG
GATGGCGCGTTGGACGCTGAGTTCATCTCACTGGACCGTACCGATCTCCC
TCCTTTCTCATCCTCTCCATTCGCCGGGAACGGCGGCGGTTCTTCGCTCG
TCGTCGAGCCTGATGTCACTACTGTCGAGGGGCTCGTGGCCCTGACGATA
GACTGCCTGAGGGACGGGCTCTCGGACGAGGCCGCCATCTTCCAGCGTCA
CATGAAGAGCCCAGAGTTTGGCAACCCGCTGCTGAGGCTGGCGTTGCCGT
CCTCCGACGACGTGCCCGAGTTCCCGCACATCGCCAACGAGGACGAAGAC
GAGGTGAACACCCTCGCGCGGCGCGCACAAGATGATGGAACTCCTCCCAT
CTACGGCGGAAGCAATGCTGCCGCCCCTGCTCTGGCGGATGGCGCGTTGG
ACGCTGAGTTCATCTCACTGGACCGTACCGATCTCCCTCCTTTCTCATCC
TCTCCATTCGCCGGGAACGGCGGCGGTTCTTCGCTCGTCGTCGAGCCTGA
TGTCACTACTGTCGAGGGGCTCGTGGCCCTGACGATAGACTGCCTGAGGG
ACGGGCTCTCGGACGAGGCCGCCATCTTCCAGCGTCACATGAAGAGCCCA
GAGTTTGGCAACCCGCTGCTGAGGCTGGCGTTGCCGTCCTCCGACGACGT
GCCCGAGTTCCCGCACATCGCCAACGAGGACGAAGACGAGAGAGATCCCG
CCATTGCGGCGGCTGAGGCGGAGCTGACCGAGGAACACCTCAAGCTGGGG
GAGAGAGGCACGAAGGAGCTCGTGCACGACCGCCGCCGTTCGCAGCTTGA
CGTGTACCTGATATGCGAGGCCTTTAGGGCGCTACGGGGGGAAGGGCATG
AGGCGGGGGCTGCGGGTTTGGGAGCAGATAGCGAAGGTAGTTGGCAGCTC
AGCGACGAGGACGCTCGTACTCTAGACCAAATGCTGAACGATGCCGCCGC
CATCGATCCGTGAAGAGATCCCGCCATTGCGGCGGCTGAGGCGGAGCTGA
CCGAGGAACACCTCAAGCTGGGGGAGAGAGGCACGAAGGAGCTCGTGCAC
GACCGCCGCCGTTCGCAGCTTGACGTGTACCTGATATGCGAGGCCTTTAG
GGCGCTACGGGGGGAAGGGCATGAGGCGGGGGCTGCGGGTTTGGGAGCAG
ATAGCGAAGGTAGTTGGCAGCTCAGCGACGAGGACGCTCGTACTCTAGAC
CAAATGCTGAACGATGCCGCCGCCATCGATCCGTGA
back to top