mRNA_F-serratus_M_contig1093.851.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1093.851.1
Unique NamemRNA_F-serratus_M_contig1093.851.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1093.851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1093contigF-serratus_M_contig1093:15211..16199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1093.851.1prot_F-serratus_M_contig1093.851.1Fucus serratus malepolypeptideF-serratus_M_contig1093 15212..16142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.1193876-UTR-F-serratus_M_contig1093:15210..152111622928948.1193876-UTR-F-serratus_M_contig1093:15210..15211Fucus serratus maleUTRF-serratus_M_contig1093 15211..15211 +
1690962641.1858847-UTR-F-serratus_M_contig1093:15210..152111690962641.1858847-UTR-F-serratus_M_contig1093:15210..15211Fucus serratus maleUTRF-serratus_M_contig1093 15211..15211 +
1622928948.1578867-UTR-F-serratus_M_contig1093:16142..161991622928948.1578867-UTR-F-serratus_M_contig1093:16142..16199Fucus serratus maleUTRF-serratus_M_contig1093 16143..16199 +
1690962641.2111425-UTR-F-serratus_M_contig1093:16142..161991690962641.2111425-UTR-F-serratus_M_contig1093:16142..16199Fucus serratus maleUTRF-serratus_M_contig1093 16143..16199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.1342616-CDS-F-serratus_M_contig1093:15211..152741622928948.1342616-CDS-F-serratus_M_contig1093:15211..15274Fucus serratus maleCDSF-serratus_M_contig1093 15212..15274 +
1690962641.1943624-CDS-F-serratus_M_contig1093:15211..152741690962641.1943624-CDS-F-serratus_M_contig1093:15211..15274Fucus serratus maleCDSF-serratus_M_contig1093 15212..15274 +
1622928948.147816-CDS-F-serratus_M_contig1093:15851..161421622928948.147816-CDS-F-serratus_M_contig1093:15851..16142Fucus serratus maleCDSF-serratus_M_contig1093 15852..16142 +
1690962641.2025886-CDS-F-serratus_M_contig1093:15851..161421690962641.2025886-CDS-F-serratus_M_contig1093:15851..16142Fucus serratus maleCDSF-serratus_M_contig1093 15852..16142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1093.851.1

>prot_F-serratus_M_contig1093.851.1 ID=prot_F-serratus_M_contig1093.851.1|Name=mRNA_F-serratus_M_contig1093.851.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MEGPLVDGGVVEESAVIAEPKGKSDSRPNGFNENACSGNRNPKAGSEAAA
KTDVRREIPKPPTGPVAERGRGQARTVTSSPPLNEATNTNSSSNARGAST
KTKIPMVRRTSRRARAR*
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mRNA from alignment at F-serratus_M_contig1093:15211..16199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1093.851.1 ID=mRNA_F-serratus_M_contig1093.851.1|Name=mRNA_F-serratus_M_contig1093.851.1|organism=Fucus serratus male|type=mRNA|length=989bp|location=Sequence derived from alignment at F-serratus_M_contig1093:15211..16199+ (Fucus serratus male)
GATGGAGGGCCCTTTAGTTGATGGCGGAGTTGTTGAGGAAAGCGCTGTCA
TAGCGGAACCCAAGGTGCGTGCAGGCGGACGAGCTGGCGGGCACTGTCAT
GGATGTTGCTCCCCCCGCGTGTGTAGGAACGTCTAGTTTTGAAAGAGGCG
AAACAGCTGTAAACAGGGGAAGAAGATGTGTGTGGGCCTCGACGTGGTTT
GTGCGGTGAAGATCTGGAGTCTTTTCTGAGACGGGCGGTTGTTTGTTTTC
GTTCTTTTCGTTGTTGGGGGAGGGTTCACCTGCAAATCCTCGTTCAGCAC
ACCGTGGTCAACGACGACGATCCATATCCCGTAGTGTGTAGGCGTGTCTT
GCTGAGATGGCAACTTGCTCGACGTTGAGCGGCATCGGCTTCGAGAGTTT
CGGTCACATAGCTGGAGCATTTGCATCCCGTGTTGTGCCACAGCATAGTT
ATCTATCTTGCGCTTCTGTCGCATGGATAGCTACTGTAAAGACTGTTAAT
AATGCCTCTTCCGTTGTGACGTTTCGCGTCCTGGTTTATAATTCCCAACG
GTCGATTTCTCGCGCCCTCCACATGAATCCCGAATGCAAAATGTCTTTCC
AATGCGTGTCGTGTCCATTCTCTGTCCTCTGCTCTCCGAAGGGGAAGTCC
GACAGCAGGCCCAATGGTTTCAATGAAAACGCCTGCTCCGGCAACAGAAA
CCCTAAGGCGGGGAGTGAAGCTGCGGCCAAGACTGACGTTCGCCGTGAAA
TTCCGAAGCCTCCGACGGGTCCTGTGGCGGAGAGAGGCAGGGGCCAGGCG
CGGACAGTTACCTCCAGTCCCCCCCTTAACGAGGCTACCAACACAAACAG
TTCTTCTAACGCTAGAGGCGCAAGCACGAAGACCAAGATCCCGATGGTTA
GGCGTACCTCCCGCCGTGCACGCGCGAGGTAGAAAAAGGTACTGTAGTAC
TTGACCGTACAGGGGGTTGGGTTTTAAAGAGAAAGGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1093:15211..16199+

>mRNA_F-serratus_M_contig1093.851.1 ID=mRNA_F-serratus_M_contig1093.851.1|Name=mRNA_F-serratus_M_contig1093.851.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1093:15211..16199+ (Fucus serratus male)
ATGGAGGGCCCTTTAGTTGATGGCGGAGTTGTTGAGGAAAGCGCTGTCAT
AGCGGAACCCAAGATGGAGGGCCCTTTAGTTGATGGCGGAGTTGTTGAGG
AAAGCGCTGTCATAGCGGAACCCAAGGGGAAGTCCGACAGCAGGCCCAAT
GGTTTCAATGAAAACGCCTGCTCCGGCAACAGAAACCCTAAGGCGGGGAG
TGAAGCTGCGGCCAAGACTGACGTTCGCCGTGAAATTCCGAAGCCTCCGA
CGGGTCCTGTGGCGGAGAGAGGCAGGGGCCAGGCGCGGACAGTTACCTCC
AGTCCCCCCCTTAACGAGGCTACCAACACAAACAGTTCTTCTAACGCTAG
AGGCGCAAGCACGAAGACCAAGATCCCGATGGTTAGGCGTACCTCCCGCC
GTGCACGCGCGAGGTAGGGGAAGTCCGACAGCAGGCCCAATGGTTTCAAT
GAAAACGCCTGCTCCGGCAACAGAAACCCTAAGGCGGGGAGTGAAGCTGC
GGCCAAGACTGACGTTCGCCGTGAAATTCCGAAGCCTCCGACGGGTCCTG
TGGCGGAGAGAGGCAGGGGCCAGGCGCGGACAGTTACCTCCAGTCCCCCC
CTTAACGAGGCTACCAACACAAACAGTTCTTCTAACGCTAGAGGCGCAAG
CACGAAGACCAAGATCCCGATGGTTAGGCGTACCTCCCGCCGTGCACGCG
CGAGGTAG
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