mRNA_F-serratus_M_contig1090.845.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1090.845.1
Unique NamemRNA_F-serratus_M_contig1090.845.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1090.845.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 8.560e-49
Identity = 119/267 (44.57%), Postives = 147/267 (55.06%), Query Frame = 2 
Query:  176 RRPLVPSGFECVAHPVFFRYDDDDEVSTTRASRESGARRRSRDESARPLEATTFSTTSMEAHGHNDPDIVALSTLES-DDLDDEASAAKYESNADSMSGSMGPSGKRELDTVCPICLEKRQIPVTLTSCLHTFCHTCIIGWYEHTVAVALRRGDFSRLRAQASASRRQDFAYDDQGADIAGNTRGSRSSARAGAWTGPPLPYRCPLCQVPGPFFLAVERIRPVRSNSLPGVKE------KGSKLNFNLMGVRTILGGGGRGSGGIEV 955
            R  LVPSGFECVAHPVFFR D  D  S                + A P  + T + ++M +    DP   A   +E+ +  DD         NA  +SG     G RE+ +VCPICL + + PVTLTSCLHTFCHTCI+GWYEHTVAVAL RG+ S    +   S        +   DI+G++  S  +   G     P+PYRCPLCQVPGPFFLAVER    RS+S  G +E      K SKL F L+G  T+ GGGG  S G+ V
Sbjct:   15 RDTLVPSGFECVAHPVFFRNDVSDGSS----------------DYAAPPTSNTAARSAMNSTTTIDPTAAAAWDVEALEGGDDSGRDTDAPGNASIISGR----GGREVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSN---DISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVER---PRSSSFKGKREANPKSSKPSKLKFRLLGAPTVFGGGGPVSRGVAV 255
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BLAST of mRNA_F-serratus_M_contig1090.845.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.680e-6
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:  446 SNADSMSGSMGPSGKRELDTVCPICLEKRQIPVTLTSCLHTFCHT 580
            SNA   SG     G RE+ +VCPICL K + PVTLTSCLHTFCHT
Sbjct:   34 SNASISSGR----GGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1090.845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE8.560e-4944.57RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI2.680e-664.44zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1090contigF-serratus_M_contig1090:230199..232711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size982
Cds size903
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1090.845.1prot_F-serratus_M_contig1090.845.1Fucus serratus malepolypeptideF-serratus_M_contig1090 230199..232632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.8620365-CDS-F-serratus_M_contig1090:230198..2305981622928947.8620365-CDS-F-serratus_M_contig1090:230198..230598Fucus serratus maleCDSF-serratus_M_contig1090 230199..230598 -
1690962641.0765245-CDS-F-serratus_M_contig1090:230198..2305981690962641.0765245-CDS-F-serratus_M_contig1090:230198..230598Fucus serratus maleCDSF-serratus_M_contig1090 230199..230598 -
1622928947.8747182-CDS-F-serratus_M_contig1090:232129..2326321622928947.8747182-CDS-F-serratus_M_contig1090:232129..232632Fucus serratus maleCDSF-serratus_M_contig1090 232130..232632 -
1690962641.086651-CDS-F-serratus_M_contig1090:232129..2326321690962641.086651-CDS-F-serratus_M_contig1090:232129..232632Fucus serratus maleCDSF-serratus_M_contig1090 232130..232632 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.8869722-UTR-F-serratus_M_contig1090:232632..2327111622928947.8869722-UTR-F-serratus_M_contig1090:232632..232711Fucus serratus maleUTRF-serratus_M_contig1090 232633..232711 -
1690962641.095507-UTR-F-serratus_M_contig1090:232632..2327111690962641.095507-UTR-F-serratus_M_contig1090:232632..232711Fucus serratus maleUTRF-serratus_M_contig1090 232633..232711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1090.845.1

>prot_F-serratus_M_contig1090.845.1 ID=prot_F-serratus_M_contig1090.845.1|Name=mRNA_F-serratus_M_contig1090.845.1|organism=Fucus serratus male|type=polypeptide|length=301bp
MQGIFHSTMPGSTGASLQSADAQSSAAARTPTRRPLVPSGFECVAHPVFF
RYDDDDEVSTTRASRESGARRRSRDESARPLEATTFSTTSMEAHGHNDPD
IVALSTLESDDLDDEASAAKYESNADSMSGSMGPSGKRELDTVCPICLEK
RQIPVTLTSCLHTFCHTCIIGWYEHTVAVALRRGDFSRLRAQASASRRQD
FAYDDQGADIAGNTRGSRSSARAGAWTGPPLPYRCPLCQVPGPFFLAVER
IRPVRSNSLPGVKEKGSKLNFNLMGVRTILGGGGRGSGGIEVGRADCRSE
V
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mRNA from alignment at F-serratus_M_contig1090:230199..232711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1090.845.1 ID=mRNA_F-serratus_M_contig1090.845.1|Name=mRNA_F-serratus_M_contig1090.845.1|organism=Fucus serratus male|type=mRNA|length=2513bp|location=Sequence derived from alignment at F-serratus_M_contig1090:230199..232711- (Fucus serratus male)
CCCAACTCTGACTTTCTTCGCCCGTCAGAGGGAATGAAGTCGTCCGTCCT
CATCATCTAGGTCCGTAAGAAATATCTTAATGCAAGGTATCTTCCATTCT
ACCATGCCGGGCTCCACTGGTGCTAGTCTTCAGTCAGCAGACGCACAATC
CTCTGCAGCAGCCCGAACACCGACGCGACGCCCCCTCGTCCCTAGCGGGT
TTGAGTGCGTCGCCCACCCTGTCTTTTTTCGTTACGACGACGATGACGAG
GTTTCTACTACGCGTGCTTCCCGGGAGAGTGGTGCGCGAAGACGATCGCG
CGACGAGTCGGCTCGGCCATTGGAAGCAACAACATTCTCCACCACATCCA
TGGAGGCGCACGGACACAACGACCCCGATATCGTGGCGTTATCAACATTG
GAGAGCGACGATCTCGACGACGAAGCAAGCGCCGCGAAGTACGAAAGTAA
TGCCGATTCGATGAGCGGGAGCATGGGTCCATCGGGCAAGCGGGAGCTCG
ACACCGTGTGCCCTATCTGTTTGGAGAAGCGGCAAATACCAGTAACTCTT
ACTTCCTGCCTTCACACTTTCTGCCACACGTGGTGAGGATTATTACCGTG
GGGGTCCGATCAACAAAAAAATGTGGTAACCTTGATTCACGCAGGCTCGA
GGTTGACGAATACTGTACTTACGTACTCCGTTTATACAGAATTACTGGCA
TCGCGGGCGTTCCCTTGACCGCGATTAAAATAATGTAACGCTTAGCATTG
CCGTCCATCACTTTCACTTTTTTCAGTCGACGGGGGCCGCCTTTAAGGCT
GCCCTATACACGATTGATCCCCGACCCCCGTATGTTGCTATACTCCAAAA
TATTCTCGGTTTCTATTTTTTTTAATGCGGTTGAATGGTTGCTTCAATAA
ACTGGCGCCATTTAGGTTATTTGCAGCTCTTCTCAAGGGTTGTAGCAGTT
ATGGCAGAAATGGAGGTCAGCCACAAGAGAAGGCTAACCCGCAAGGAATG
AAAGTGTTCGCCGTAGAAAGACGTAGTCTTCCTGAAGATTTCGCGTCTTT
TCCTGCTCTGTGTGGAGTGCAATCGTCGCCACTCGTATTTTCTCCGAATC
TGCCGATCGTTTGGGGTCCGCTGCAGTGGTAGGCACCGGGGGAGACACTG
TGCTTTAGGTTCGCGTTCTCCCGAGCTGAGTGCTCGTGTTAGGTGACCGC
TCTCTTGTAAATCGTACATACCAGCTCACACGGACGCTTCTGTTTCTCAC
ACGGGCCGAAACGGTTGAGAGCACGTCGAGGACGGCGGCCGAGAGCCTAT
GTGGTCAGGTCTGAACCAAAGCCTGTCTCAGCCGACCAAATACATTCCAC
TCACGGTACACAAAGCCCCCGCGCTCACGAAACCGCAAGCAGCATCGTAG
TATGTGGGAGTTAGGTAAACATGGCCGCTGGAATTAGCACACGAAACCGA
GCTACGATGAAATAATCGTCTCTTTTGTTGAAGTTGAAAGCCTGTGCAAT
CCAGGTGGTTATCCTCGTCGAACGCCTCGAGTGGAAGACACCGTGCTTGA
TGCGCACACTCGCGAACCAATTACGGTTATTACATAAAGATACCTGAGCG
TTTTATACTTCTGTAGATGGTGTTAGCCCAGACACTAGTCAACGAGTGCG
TGCCACAGCAGAAATCTGCGTGGAGAGAGCACTCTCAATATTCTGTACAA
ATCATTACAAAATCGACATAACTAGCGTACTGTATAAAAGTTTGATGGGG
CAGTCCCATCTGTACAAGAAAAACAATGATATCTATGATATATGCAGCAC
TGTCATCATACTCCATCAGTTCGACCAATGAGTGCCCGCGCATAAAATAA
AAGTGCCAAGGAAAGATTTAGAAATACCACACAATGAATCCCGCCCTTAG
CCAAGAAATTCATGTTTTTTGCGAACCGGAACACCCTCAGAGACATGCAA
ATACAGATTAAAATCCATACTGTGTATAGGGGAGCCTTAAAGCAGGCTCC
CAAAACCCTCTAGAGTTTATTCAGTCCACGGCTCGAACATTGTTTTTTAC
GGTATCTTGCCTTTGACGGTTTCCCCTTCCTTCCTCTTGCGCGTATTTTT
ACTTTTTCCGAAGCATAATAGGATGGTACGAACACACGGTCGCCGTCGCG
CTGCGACGAGGCGACTTTTCCCGCCTCCGCGCCCAAGCCTCAGCCTCCCG
ACGGCAAGACTTCGCGTACGACGATCAAGGTGCCGACATCGCGGGCAACA
CCAGAGGGAGTAGAAGTAGCGCTAGGGCTGGCGCTTGGACGGGGCCGCCC
TTGCCCTATCGCTGCCCGCTGTGCCAGGTACCGGGCCCCTTTTTTCTCGC
CGTCGAGCGCATCCGCCCTGTACGCTCCAATAGCTTGCCAGGTGTCAAGG
AAAAGGGATCAAAACTGAACTTCAACCTCATGGGTGTGAGGACGATCTTA
GGGGGGGGCGGGCGGGGTAGTGGCGGGATCGAGGTTGGGCGTGCAGACTG
CAGGAGCGAAGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1090:230199..232711-

>mRNA_F-serratus_M_contig1090.845.1 ID=mRNA_F-serratus_M_contig1090.845.1|Name=mRNA_F-serratus_M_contig1090.845.1|organism=Fucus serratus male|type=CDS|length=1806bp|location=Sequence derived from alignment at F-serratus_M_contig1090:230199..232711- (Fucus serratus male)
ATGCAAGGTATCTTCCATTCTACCATGCCGGGCTCCACTGGTGCTAGTCT
TCAGTCAGCAGACGCACAATCCTCTGCAGCAGCCCGAACACCGACGCGAC
GCCCCCTCGTCCCTAGCGGGTTTGAGTGCGTCGCCCACCCTGTCTTTTTT
CGTTACGACGACGATGACGAGGTTTCTACTACGCGTGCTTCCCGGGAGAG
TGGTGCGCGAAGACGATCGCGCGACGAGTCGGCTCGGCCATTGGAAGCAA
CAACATTCTCCACCACATCCATGGAGGCGCACGGACACAACGACCCCGAT
ATCGTGGCGTTATCAACATTGGAGAGCGACGATCTCGACGACGAAGCAAG
CGCCGCGAAGTACGAAAGTAATGCCGATTCGATGAGCGGGAGCATGGGTC
CATCGGGCAAGCGGGAGCTCGACACCGTGTGCCCTATCTGTTTGGAGAAG
CGGCAAATACCAGTAACTCTTACTTCCTGCCTTCACACTTTCTGCCACAC
GTGATGCAAGGTATCTTCCATTCTACCATGCCGGGCTCCACTGGTGCTAG
TCTTCAGTCAGCAGACGCACAATCCTCTGCAGCAGCCCGAACACCGACGC
GACGCCCCCTCGTCCCTAGCGGGTTTGAGTGCGTCGCCCACCCTGTCTTT
TTTCGTTACGACGACGATGACGAGGTTTCTACTACGCGTGCTTCCCGGGA
GAGTGGTGCGCGAAGACGATCGCGCGACGAGTCGGCTCGGCCATTGGAAG
CAACAACATTCTCCACCACATCCATGGAGGCGCACGGACACAACGACCCC
GATATCGTGGCGTTATCAACATTGGAGAGCGACGATCTCGACGACGAAGC
AAGCGCCGCGAAGTACGAAAGTAATGCCGATTCGATGAGCGGGAGCATGG
GTCCATCGGGCAAGCGGGAGCTCGACACCGTGTGCCCTATCTGTTTGGAG
AAGCGGCAAATACCAGTAACTCTTACTTCCTGCCTTCACACTTTCTGCCA
CACGTGCATAATAGGATGGTACGAACACACGGTCGCCGTCGCGCTGCGAC
GAGGCGACTTTTCCCGCCTCCGCGCCCAAGCCTCAGCCTCCCGACGGCAA
GACTTCGCGTACGACGATCAAGGTGCCGACATCGCGGGCAACACCAGAGG
GAGTAGAAGTAGCGCTAGGGCTGGCGCTTGGACGGGGCCGCCCTTGCCCT
ATCGCTGCCCGCTGTGCCAGGTACCGGGCCCCTTTTTTCTCGCCGTCGAG
CGCATCCGCCCTGTACGCTCCAATAGCTTGCCAGGTGTCAAGGAAAAGGG
ATCAAAACTGAACTTCAACCTCATGGGTGTGAGGACGATCTTAGGGGGGG
GCGGGCGGGGTAGTGGCGGGATCGAGGTTGGGCGTGCAGACTGCAGGAGC
GAAGTGCATAATAGGATGGTACGAACACACGGTCGCCGTCGCGCTGCGAC
GAGGCGACTTTTCCCGCCTCCGCGCCCAAGCCTCAGCCTCCCGACGGCAA
GACTTCGCGTACGACGATCAAGGTGCCGACATCGCGGGCAACACCAGAGG
GAGTAGAAGTAGCGCTAGGGCTGGCGCTTGGACGGGGCCGCCCTTGCCCT
ATCGCTGCCCGCTGTGCCAGGTACCGGGCCCCTTTTTTCTCGCCGTCGAG
CGCATCCGCCCTGTACGCTCCAATAGCTTGCCAGGTGTCAAGGAAAAGGG
ATCAAAACTGAACTTCAACCTCATGGGTGTGAGGACGATCTTAGGGGGGG
GCGGGCGGGGTAGTGGCGGGATCGAGGTTGGGCGTGCAGACTGCAGGAGC
GAAGTG
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