mRNA_F-serratus_M_contig1090.838.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1090.838.1
Unique NamemRNA_F-serratus_M_contig1090.838.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 6.060e-32
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V +K   GCG+   K A+  RA+Y L+QSG  W
Sbjct:  151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 294          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.860e-31
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V +K   GCG+   K A+  RA+Y L+QSG  W
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 895          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.920e-31
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V +K   GCG+   K A+  RA+Y L+QSG  W
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1274          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.920e-31
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V +K   GCG+   K A+  RA+Y L+QSG  W
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1294          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.930e-31
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V +K   GCG+   K A+  RA+Y L+QSG  W
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1437          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JZH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH7_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.370e-31
Identity = 59/143 (41.26%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    4 QTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            Q ++  E +G  D+ T++ +DG P G      +  FS+KT+K G + K KAR VA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T+A LD  V +K   GCGE   K  + +RA+Y L+QSG  W
Sbjct:  215 QAAMREEFEGHLDTGTFSFVDGAPGGRRPGSSKWCFSWKTNKEGKMEKFKARPVARGFSQFPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTQATLDEKVFLKLAAGCGEKSHKTVKADRAIYGLKQSGRQW 357          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.170e-31
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++FR+S P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V ++   GCG+   K A+  RA+Y L+QSG  W
Sbjct:  483 WEQAMRKEFEGHLATGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFRSSFPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRLPAGCGDKSHKIAKAERAIYGLKQSGRQW 626          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JJQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.060e-31
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I K K RLVA+G+ Q   V+ F +S+P P++ASVK+++A+ NE G  + H+DV QA+T A LD  VV++   GCG+   K  +  RA+Y L+QSG  W
Sbjct:  413 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIEKLKGRLVARGFSQVPNVDNFHSSSPCPSSASVKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVVLRLSAGCGDKLHKIVQAERAIYGLKQSGRQW 556          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.270e-31
Identity = 58/144 (40.28%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG P+G   +  +  FS+KT+K G I   KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  V +K   GCG+   + A+  RA+Y L+QSG  W
Sbjct:  306 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQW 449          
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.570e-31
Identity = 57/144 (39.58%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432
            W+ ++  E +G   + T++ +DG PK    +  +  F +KT+K G I K KARLVA+G+ Q   V++F +S+P P++AS+K+++A+ NE G  + H+DV QA+T A LD  + ++   GCGE   K  +  RA+Y L+QSG  W
Sbjct:   93 WEQAMREEFKGHLGTRTFSFIDGAPKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQW 236          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8S0_9PHAE6.060e-3240.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.860e-3140.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.920e-3140.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.920e-3140.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.930e-3140.97Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JZH7_9PHAE4.370e-3141.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KYH9_9PHAE5.170e-3140.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJQ8_9PHAE9.060e-3140.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE9.270e-3140.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVP5_9PHAE9.570e-3139.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1090contigF-serratus_M_contig1090:18172..18627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.5
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog15368.BRADI0007S00200.2
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.792828-CDS-F-serratus_M_contig1090:18171..186271622928946.792828-CDS-F-serratus_M_contig1090:18171..18627Fucus serratus maleCDSF-serratus_M_contig1090 18172..18627 -
1690962640.4667928-CDS-F-serratus_M_contig1090:18171..186271690962640.4667928-CDS-F-serratus_M_contig1090:18171..18627Fucus serratus maleCDSF-serratus_M_contig1090 18172..18627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1090.838.1prot_F-serratus_M_contig1090.838.1Fucus serratus malepolypeptideF-serratus_M_contig1090 18172..18627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1090.838.1

>prot_F-serratus_M_contig1090.838.1 ID=prot_F-serratus_M_contig1090.838.1|Name=mRNA_F-serratus_M_contig1090.838.1|organism=Fucus serratus male|type=polypeptide|length=152bp
WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKT
KARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVS
QAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLWNDLLVS
KL
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mRNA from alignment at F-serratus_M_contig1090:18172..18627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1090.838.1 ID=mRNA_F-serratus_M_contig1090.838.1|Name=mRNA_F-serratus_M_contig1090.838.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1090:18172..18627- (Fucus serratus male)
TGGCAAACGTCGGTAGACACTGAACTCCAAGGCCTGAAGGACTCGAATAC GTACACCGTGTTGGACGGCCTGCCGAAAGGCGAGAATGCCATCGGAATCA GGATTGTCTTTTCCTATAAGACTGACAAGAACGGCAACATCGTCAAGACC AAGGCGAGACTCGTCGCGAAAGGATATATGCAGCGTGAAGGCGTAAATTT CTTCCGGGCGTCAGCGCCGACACCTGCGGCAGCATCGGTGAAAGTGGTCA TGGCTATCTTAAACGAGCTGGGATTTCCTGTGCGCCATTTTGATGTCTCG CAAGCATTCACGAAGGCACTGCTTGACTACCCGGTCGTTATCAAGTTCTG CGGTGGTTGTGGGGAGCTGCCAGGCAAGTACGCACGCCTGAATAGAGCTC TGTACTGTCTGAGGCAGAGTGGTCTTTTGTGGAACGATCTCCTCGTGAGC AAGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1090:18172..18627-

>mRNA_F-serratus_M_contig1090.838.1 ID=mRNA_F-serratus_M_contig1090.838.1|Name=mRNA_F-serratus_M_contig1090.838.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig1090:18172..18627- (Fucus serratus male)
TGGCAAACGTCGGTAGACACTGAACTCCAAGGCCTGAAGGACTCGAATAC
GTACACCGTGTTGGACGGCCTGCCGAAAGGCGAGAATGCCATCGGAATCA
GGATTGTCTTTTCCTATAAGACTGACAAGAACGGCAACATCGTCAAGACC
AAGGCGAGACTCGTCGCGAAAGGATATATGCAGCGTGAAGGCGTAAATTT
CTTCCGGGCGTCAGCGCCGACACCTGCGGCAGCATCGGTGAAAGTGGTCA
TGGCTATCTTAAACGAGCTGGGATTTCCTGTGCGCCATTTTGATGTCTCG
CAAGCATTCACGAAGGCACTGCTTGACTACCCGGTCGTTATCAAGTTCTG
CGGTGGTTGTGGGGAGCTGCCAGGCAAGTACGCACGCCTGAATAGAGCTC
TGTACTGTCTGAGGCAGAGTGGTCTTTTGTGGAACGATCTCCTCGTGAGC
AAGCTATGGCAAACGTCGGTAGACACTGAACTCCAAGGCCTGAAGGACTC
GAATACGTACACCGTGTTGGACGGCCTGCCGAAAGGCGAGAATGCCATCG
GAATCAGGATTGTCTTTTCCTATAAGACTGACAAGAACGGCAACATCGTC
AAGACCAAGGCGAGACTCGTCGCGAAAGGATATATGCAGCGTGAAGGCGT
AAATTTCTTCCGGGCGTCAGCGCCGACACCTGCGGCAGCATCGGTGAAAG
TGGTCATGGCTATCTTAAACGAGCTGGGATTTCCTGTGCGCCATTTTGAT
GTCTCGCAAGCATTCACGAAGGCACTGCTTGACTACCCGGTCGTTATCAA
GTTCTGCGGTGGTTGTGGGGAGCTGCCAGGCAAGTACGCACGCCTGAATA
GAGCTCTGTACTGTCTGAGGCAGAGTGGTCTTTTGTGGAACGATCTCCTC
GTGAGCAAGCTA
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