mRNA_F-serratus_M_contig1090.838.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE) HSP 1 Score: 127 bits (320), Expect = 6.060e-32 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD V +K GCG+ K A+ RA+Y L+QSG W Sbjct: 151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 294
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.860e-31 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD V +K GCG+ K A+ RA+Y L+QSG W Sbjct: 752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 895
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.920e-31 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD V +K GCG+ K A+ RA+Y L+QSG W Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1274
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.920e-31 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD V +K GCG+ K A+ RA+Y L+QSG W Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1294
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.930e-31 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD V +K GCG+ K A+ RA+Y L+QSG W Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1437
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JZH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH7_9PHAE) HSP 1 Score: 124 bits (311), Expect = 4.370e-31 Identity = 59/143 (41.26%), Postives = 92/143 (64.34%), Query Frame = 1 Query: 4 QTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 Q ++ E +G D+ T++ +DG P G + FS+KT+K G + K KAR VA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T+A LD V +K GCGE K + +RA+Y L+QSG W Sbjct: 215 QAAMREEFEGHLDTGTFSFVDGAPGGRRPGSSKWCFSWKTNKEGKMEKFKARPVARGFSQFPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTQATLDEKVFLKLAAGCGEKSHKTVKADRAIYGLKQSGRQW 357
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE) HSP 1 Score: 127 bits (318), Expect = 5.170e-31 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++FR+S P P++AS+K+++A+ NE G + H+DV QA+T A LD V ++ GCG+ K A+ RA+Y L+QSG W Sbjct: 483 WEQAMRKEFEGHLATGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFRSSFPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRLPAGCGDKSHKIAKAERAIYGLKQSGRQW 626
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JJQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ8_9PHAE) HSP 1 Score: 126 bits (316), Expect = 9.060e-31 Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I K K RLVA+G+ Q V+ F +S+P P++ASVK+++A+ NE G + H+DV QA+T A LD VV++ GCG+ K + RA+Y L+QSG W Sbjct: 413 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIEKLKGRLVARGFSQVPNVDNFHSSSPCPSSASVKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVVLRLSAGCGDKLHKIVQAERAIYGLKQSGRQW 556
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 126 bits (316), Expect = 9.270e-31 Identity = 58/144 (40.28%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG P+G + + FS+KT+K G I KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD V +K GCG+ + A+ RA+Y L+QSG W Sbjct: 306 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQW 449
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE) HSP 1 Score: 124 bits (311), Expect = 9.570e-31 Identity = 57/144 (39.58%), Postives = 91/144 (63.19%), Query Frame = 1 Query: 1 WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTKARLVAKGYMQREGVNFFRASAPTPAAASVKVVMAILNELGFPVRHFDVSQAFTKALLDYPVVIKFCGGCGELPGKYARLNRALYCLRQSGLLW 432 W+ ++ E +G + T++ +DG PK + + F +KT+K G I K KARLVA+G+ Q V++F +S+P P++AS+K+++A+ NE G + H+DV QA+T A LD + ++ GCGE K + RA+Y L+QSG W Sbjct: 93 WEQAMREEFKGHLGTRTFSFIDGAPKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQW 236 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1090.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1090.838.1 >prot_F-serratus_M_contig1090.838.1 ID=prot_F-serratus_M_contig1090.838.1|Name=mRNA_F-serratus_M_contig1090.838.1|organism=Fucus serratus male|type=polypeptide|length=152bp WQTSVDTELQGLKDSNTYTVLDGLPKGENAIGIRIVFSYKTDKNGNIVKTback to top mRNA from alignment at F-serratus_M_contig1090:18172..18627- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1090.838.1 ID=mRNA_F-serratus_M_contig1090.838.1|Name=mRNA_F-serratus_M_contig1090.838.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1090:18172..18627- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1090:18172..18627- >mRNA_F-serratus_M_contig1090.838.1 ID=mRNA_F-serratus_M_contig1090.838.1|Name=mRNA_F-serratus_M_contig1090.838.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig1090:18172..18627- (Fucus serratus male)back to top |