mRNA_F-serratus_M_contig109.837.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig109.837.1
Unique NamemRNA_F-serratus_M_contig109.837.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig109.837.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.090e-33
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    4 KEEKRLQKSQREARAHMERLRSKQKSLLLDFGRSRPG----NGPPAMADCGGTSRGGGILEDMPREVLWEIFCSPGISSRELFGPIRAVCQNWLQAVDTLPCASARKMVARACAG 336
            KE+KR  K + EA+A+ +RLRSKQK+LLLDFGRS       +G        G++RGG +LE MP EVLW++FCSPGISSRELFGPIR VC NW++AVD +PCA+AR+ VA+ CAG
Sbjct:  288 KEDKRQHKRRNEAKANKDRLRSKQKTLLLDFGRSSGATTSKSGGSXXXSTSGSARGGTMLESMPWEVLWQVFCSPGISSRELFGPIRGVCGNWMRAVDVMPCAAARREVAKVCAG 402
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig109.837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6K8_ECTSI1.090e-3360.00DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig109contigF-serratus_M_contig109:798624..799467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.5e-29
Seed eggNOG ortholog2880.D7G6K8
Preferred nameFBXO18
KEGG koko:K10300
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0030674,GO:0031146,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043142,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0060542,GO:0065007,GO:0065009,GO:0070035,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1904949,GO:1990234,GO:1990518,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.4486427-CDS-F-serratus_M_contig109:798623..7987581622928946.4486427-CDS-F-serratus_M_contig109:798623..798758Fucus serratus maleCDSF-serratus_M_contig109 798624..798758 -
1690962640.3051994-CDS-F-serratus_M_contig109:798623..7987581690962640.3051994-CDS-F-serratus_M_contig109:798623..798758Fucus serratus maleCDSF-serratus_M_contig109 798624..798758 -
1622928946.4652038-CDS-F-serratus_M_contig109:799266..7994671622928946.4652038-CDS-F-serratus_M_contig109:799266..799467Fucus serratus maleCDSF-serratus_M_contig109 799267..799467 -
1690962640.3334692-CDS-F-serratus_M_contig109:799266..7994671690962640.3334692-CDS-F-serratus_M_contig109:799266..799467Fucus serratus maleCDSF-serratus_M_contig109 799267..799467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig109.837.1prot_F-serratus_M_contig109.837.1Fucus serratus malepolypeptideF-serratus_M_contig109 798624..799467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig109.837.1

>prot_F-serratus_M_contig109.837.1 ID=prot_F-serratus_M_contig109.837.1|Name=mRNA_F-serratus_M_contig109.837.1|organism=Fucus serratus male|type=polypeptide|length=112bp
KKEEKRLQKSQREARAHMERLRSKQKSLLLDFGRSRPGNGPPAMADCGGT
SRGGGILEDMPREVLWEIFCSPGISSRELFGPIRAVCQNWLQAVDTLPCA
SARKMVARACAG
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mRNA from alignment at F-serratus_M_contig109:798624..799467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig109.837.1 ID=mRNA_F-serratus_M_contig109.837.1|Name=mRNA_F-serratus_M_contig109.837.1|organism=Fucus serratus male|type=mRNA|length=844bp|location=Sequence derived from alignment at F-serratus_M_contig109:798624..799467- (Fucus serratus male)
AAAAAGGAGGAAAAACGGCTGCAAAAGAGCCAGCGTGAGGCCAGGGCGCA
CATGGAACGCTTGCGCTCCAAGCAGAAATCGCTACTCCTAGACTTCGGGC
GGTCGCGGCCTGGGAACGGACCACCCGCAATGGCGGACTGTGGCGGCACA
TCACGAGGCGGGGGTATCCTGGAGGACATGCCGAGAGAGGTCTTGTGGGA
GGTATGCCGCCCGCTCGGGGCGCTTGGTGATCGCGTCAATTCCATGAAAA
GGCCTCAGTAGACTTGACGACTCCCGTGAGTGATGCTGGCGTCTGTTTTA
CTATTCCGCCTCCTCTGATGTGGATTGCCCCGTCGTGCGAGTTCAGTGAC
CAGCGAAACAGCATACCTAAAAAGGCGGCTACAGTCAGTACTCAGCGTAC
GTGCCGGACTGTAGAAACAGTGATACGCTCGCGTCGTGGGAGGGTTGCCC
CAACGCGACCACATGGTTTTGCTACAGCTCAAATCCATCCATTCCCTGGT
AACGTTTCCCCCATTCCCTGTCCCCCTTCACACACATACACTTTCGTGGA
ACGTCGCGCTCGAAAAAACCTTGTCTTGACAGACCAAATAACCAAACCGA
AAGGATCCAAACGTTTTTTTTGTTCCTGACTTCCCCTGTGCCGCCTCCAT
GGATCGCTTGCCCCCCACCCGCCGCTGGCATCACATCCCCCATATCGCAC
AAAACAAAGATTTTCTGCAGCCCGGGAATCTCGTCGCGGGAGCTGTTCGG
GCCTATCCGTGCCGTGTGCCAGAACTGGTTGCAGGCGGTGGATACCTTGC
CCTGTGCCAGCGCGCGGAAGATGGTTGCCCGCGCTTGTGCCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig109:798624..799467-

>mRNA_F-serratus_M_contig109.837.1 ID=mRNA_F-serratus_M_contig109.837.1|Name=mRNA_F-serratus_M_contig109.837.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig109:798624..799467- (Fucus serratus male)
AAAAAGGAGGAAAAACGGCTGCAAAAGAGCCAGCGTGAGGCCAGGGCGCA
CATGGAACGCTTGCGCTCCAAGCAGAAATCGCTACTCCTAGACTTCGGGC
GGTCGCGGCCTGGGAACGGACCACCCGCAATGGCGGACTGTGGCGGCACA
TCACGAGGCGGGGGTATCCTGGAGGACATGCCGAGAGAGGTCTTGTGGGA
GAAAAAGGAGGAAAAACGGCTGCAAAAGAGCCAGCGTGAGGCCAGGGCGC
ACATGGAACGCTTGCGCTCCAAGCAGAAATCGCTACTCCTAGACTTCGGG
CGGTCGCGGCCTGGGAACGGACCACCCGCAATGGCGGACTGTGGCGGCAC
ATCACGAGGCGGGGGTATCCTGGAGGACATGCCGAGAGAGGTCTTGTGGG
AGATTTTCTGCAGCCCGGGAATCTCGTCGCGGGAGCTGTTCGGGCCTATC
CGTGCCGTGTGCCAGAACTGGTTGCAGGCGGTGGATACCTTGCCCTGTGC
CAGCGCGCGGAAGATGGTTGCCCGCGCTTGTGCCGGGATTTTCTGCAGCC
CGGGAATCTCGTCGCGGGAGCTGTTCGGGCCTATCCGTGCCGTGTGCCAG
AACTGGTTGCAGGCGGTGGATACCTTGCCCTGTGCCAGCGCGCGGAAGAT
GGTTGCCCGCGCTTGTGCCGGG
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