mRNA_F-serratus_M_contig109.836.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig109.836.1
Unique NamemRNA_F-serratus_M_contig109.836.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig109.836.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.230e-32
Identity = 81/173 (46.82%), Postives = 96/173 (55.49%), Query Frame = -2 
Query:    3 HLAATRVLCAEWGVVVGDGAAKDGGRDFADGCSSGSGKVGDGVRGTSGSWSGWEALALAVVTSSSRDRLSLCCWAIKPLMG---GGSKGGGVDGGDML---------CPGLPRREVIELLCVILCALRALE----------IPQGPRVGLAEGTFRLKGDLLVCARMLENWDV 455
            HL A +VLC EWG++   GA                           GSWSGWEA  LA+ TS+SRDRLSLCCWA++PLMG     S  GGV G   +         CPGLPR EVIELLC++LCALR+LE                +  A+G+ RLK DLLVCAR+LENWDV
Sbjct:  487 HLDAVKVLCEEWGLLGAGGACAAAXXXXXX-------XXXXXXXXXVGSWSGWEAFGLAIATSASRDRLSLCCWAVRPLMGEDTADSSSGGVHGSGGVRERQRQAPSCPGLPRGEVIELLCLMLCALRSLEGGXXXXXXXXXXXDGLMAQADGSTRLKADLLVCARVLENWDV 652
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig109.836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6K8_ECTSI6.230e-3246.82DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig109contigF-serratus_M_contig109:797632..798197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.4159021-CDS-F-serratus_M_contig109:797631..7981951622928942.4159021-CDS-F-serratus_M_contig109:797631..798195Fucus serratus maleCDSF-serratus_M_contig109 797632..798195 +
1690962638.2055557-CDS-F-serratus_M_contig109:797631..7981951690962638.2055557-CDS-F-serratus_M_contig109:797631..798195Fucus serratus maleCDSF-serratus_M_contig109 797632..798195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig109.836.1prot_F-serratus_M_contig109.836.1Fucus serratus malepolypeptideF-serratus_M_contig109 797632..798195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig109.836.1

>prot_F-serratus_M_contig109.836.1 ID=prot_F-serratus_M_contig109.836.1|Name=mRNA_F-serratus_M_contig109.836.1|organism=Fucus serratus male|type=polypeptide|length=188bp
RTSQFSSIRAHTSKSPLSLNVPSASPTRGPCGISRALKAHSITQRSSMTS
LRGRPGHNMSPPSTPPPLLPPPMRGLIAQQQRDNLSREDDVTTARASASQ
PLQLPEVPRTPSPTLPLPLLQPSAKSRPPSLAAPSPTTTPHSAHRTRVAA
RWPSTRLLRDRDSVPGPRKSSSSWPSVAAAPLSPSSST
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mRNA from alignment at F-serratus_M_contig109:797632..798197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig109.836.1 ID=mRNA_F-serratus_M_contig109.836.1|Name=mRNA_F-serratus_M_contig109.836.1|organism=Fucus serratus male|type=mRNA|length=566bp|location=Sequence derived from alignment at F-serratus_M_contig109:797632..798197+ (Fucus serratus male)
CGGACGTCCCAGTTCTCCAGCATTCGGGCGCACACAAGCAAGTCTCCCTT
GAGCCTGAACGTCCCCTCCGCCAGCCCCACCCGCGGCCCCTGTGGTATTT
CCAGAGCTCTCAAGGCGCACAGTATCACGCAGAGGAGCTCAATGACCTCT
CTCCGGGGGAGACCCGGGCACAACATGTCACCACCGTCGACGCCACCGCC
CTTGCTGCCGCCTCCCATGAGGGGCTTGATCGCCCAGCAGCAAAGGGACA
ACCTGTCCCGGGAAGATGATGTCACTACCGCCAGAGCGAGCGCTTCCCAA
CCGCTCCAACTCCCCGAAGTACCACGGACGCCGTCGCCGACCTTGCCGCT
ACCGCTGCTGCAACCATCGGCAAAATCACGCCCTCCGTCCTTAGCCGCGC
CATCTCCGACCACCACTCCCCACTCTGCACACAGGACACGCGTCGCGGCG
AGATGGCCGAGCACGCGACTTCTACGAGATCGCGACTCGGTCCCGGGTCC
AAGAAAATCTTCTTCTTCCTGGCCGTCAGTAGCAGCCGCGCCGCTCTCTC
CATCGTCATCTACACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig109:797632..798197+

>mRNA_F-serratus_M_contig109.836.1 ID=mRNA_F-serratus_M_contig109.836.1|Name=mRNA_F-serratus_M_contig109.836.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig109:797632..798197+ (Fucus serratus male)
CGGACGTCCCAGTTCTCCAGCATTCGGGCGCACACAAGCAAGTCTCCCTT
GAGCCTGAACGTCCCCTCCGCCAGCCCCACCCGCGGCCCCTGTGGTATTT
CCAGAGCTCTCAAGGCGCACAGTATCACGCAGAGGAGCTCAATGACCTCT
CTCCGGGGGAGACCCGGGCACAACATGTCACCACCGTCGACGCCACCGCC
CTTGCTGCCGCCTCCCATGAGGGGCTTGATCGCCCAGCAGCAAAGGGACA
ACCTGTCCCGGGAAGATGATGTCACTACCGCCAGAGCGAGCGCTTCCCAA
CCGCTCCAACTCCCCGAAGTACCACGGACGCCGTCGCCGACCTTGCCGCT
ACCGCTGCTGCAACCATCGGCAAAATCACGCCCTCCGTCCTTAGCCGCGC
CATCTCCGACCACCACTCCCCACTCTGCACACAGGACACGCGTCGCGGCG
AGATGGCCGAGCACGCGACTTCTACGAGATCGCGACTCGGTCCCGGGTCC
AAGAAAATCTTCTTCTTCCTGGCCGTCAGTAGCAGCCGCGCCGCTCTCTC
CATCGTCATCTACACGGACGTCCCAGTTCTCCAGCATTCGGGCGCACACA
AGCAAGTCTCCCTTGAGCCTGAACGTCCCCTCCGCCAGCCCCACCCGCGG
CCCCTGTGGTATTTCCAGAGCTCTCAAGGCGCACAGTATCACGCAGAGGA
GCTCAATGACCTCTCTCCGGGGGAGACCCGGGCACAACATGTCACCACCG
TCGACGCCACCGCCCTTGCTGCCGCCTCCCATGAGGGGCTTGATCGCCCA
GCAGCAAAGGGACAACCTGTCCCGGGAAGATGATGTCACTACCGCCAGAG
CGAGCGCTTCCCAACCGCTCCAACTCCCCGAAGTACCACGGACGCCGTCG
CCGACCTTGCCGCTACCGCTGCTGCAACCATCGGCAAAATCACGCCCTCC
GTCCTTAGCCGCGCCATCTCCGACCACCACTCCCCACTCTGCACACAGGA
CACGCGTCGCGGCGAGATGGCCGAGCACGCGACTTCTACGAGATCGCGAC
TCGGTCCCGGGTCCAAGAAAATCTTCTTCTTCCTGGCCGTCAGTAGCAGC
CGCGCCGCTCTCTCCATCGTCATCTACA
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