mRNA_F-serratus_M_contig109.831.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig109.831.1
Unique NamemRNA_F-serratus_M_contig109.831.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig109.831.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.560e-32
Identity = 58/116 (50.00%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:   94 TVPGMCMACLTECEDTLGSDWLHQEMFPGIIGNIDKTSCTVSACISCLKTYFEGIVARGFAGSCPRMRCMCXXXXXXECAWSPLVDPSVVETFRLRAEALLTLHC--CNERGHVMI 435
            T PG CM CL +C++ L S WLH+        ++  T CTV+AC+SCLKTYF GIV  GF G+CPRMRCMC      E  W+PLV+ +V+ETF+ RA  LL++ C  C+ RG +M+
Sbjct:   56 TRPGACMVCLEDCDNVLDSAWLHRLAASSSASDVGGTDCTVTACVSCLKTYFTGIVEAGFDGACPRMRCMCCPRVVCEWVWAPLVEATVLETFQKRAATLLSIQCGMCHSRGTIMV 171
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BLAST of mRNA_F-serratus_M_contig109.831.1 vs. uniprot
Match: A0A835YLL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.040e-13
Identity = 47/116 (40.52%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:  103 GMCMACLTECEDTLGSDWLHQ-EMFPGIIGNIDKTSC---TVSACISCLKTYFEGIVARGFAGSCPRMRCMCXXXXXXECAWSPLVDPSVVETFRLRAEALLTLHC--CNERGHVM 432
            GMC  C+ E +  +G+++LH  E F       D T+    T  AC  CL  YF  IVA G+ G CPRM+C        E  WS LV+P     FR RA  LLTL C  C+ R  +M
Sbjct:   79 GMCSVCMEE-QQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFCPLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLM 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig109.831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI3.560e-3250.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLL2_9STRA4.040e-1340.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig109contigF-serratus_M_contig109:741211..742206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue2.1e-28
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig109.831.1prot_F-serratus_M_contig109.831.1Fucus serratus malepolypeptideF-serratus_M_contig109 741211..742206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.858589-CDS-F-serratus_M_contig109:741210..7414621622928945.858589-CDS-F-serratus_M_contig109:741210..741462Fucus serratus maleCDSF-serratus_M_contig109 741211..741462 +
1690962639.9715517-CDS-F-serratus_M_contig109:741210..7414621690962639.9715517-CDS-F-serratus_M_contig109:741210..741462Fucus serratus maleCDSF-serratus_M_contig109 741211..741462 +
1622928945.9070208-CDS-F-serratus_M_contig109:741643..7417961622928945.9070208-CDS-F-serratus_M_contig109:741643..741796Fucus serratus maleCDSF-serratus_M_contig109 741644..741796 +
1690962639.9903684-CDS-F-serratus_M_contig109:741643..7417961690962639.9903684-CDS-F-serratus_M_contig109:741643..741796Fucus serratus maleCDSF-serratus_M_contig109 741644..741796 +
1622928945.922616-CDS-F-serratus_M_contig109:742173..7422061622928945.922616-CDS-F-serratus_M_contig109:742173..742206Fucus serratus maleCDSF-serratus_M_contig109 742174..742206 +
1690962640.0006714-CDS-F-serratus_M_contig109:742173..7422061690962640.0006714-CDS-F-serratus_M_contig109:742173..742206Fucus serratus maleCDSF-serratus_M_contig109 742174..742206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig109.831.1

>prot_F-serratus_M_contig109.831.1 ID=prot_F-serratus_M_contig109.831.1|Name=mRNA_F-serratus_M_contig109.831.1|organism=Fucus serratus male|type=polypeptide|length=146bp
AAPLRVTRDGTDKLRPPALDSSDGVLRTTLSTVPGMCMACLTECEDTLGS
DWLHQEMFPGIIGNIDKTSCTVSACISCLKTYFEGIVARGFAGSCPRMRC
MCCPRVVCECAWSPLVDPSVVETFRLRAEALLTLHCCNERGHVMID
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mRNA from alignment at F-serratus_M_contig109:741211..742206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig109.831.1 ID=mRNA_F-serratus_M_contig109.831.1|Name=mRNA_F-serratus_M_contig109.831.1|organism=Fucus serratus male|type=mRNA|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig109:741211..742206+ (Fucus serratus male)
GCGGCGCCGTTGCGTGTAACGAGAGATGGCACGGATAAACTTCGCCCTCC
CGCTCTTGACTCCTCCGACGGGGTGCTCCGAACGACTCTGTCGACGGTGC
CGGGGATGTGCATGGCGTGCTTAACGGAATGCGAGGACACTCTAGGTTCA
GATTGGCTTCACCAGGAGATGTTTCCAGGCATTATCGGGAATATCGACAA
GACCTCGTGCACCGTTTCTGCGTGCATCTCTTGCCTCAAGACGTACTTCG
AGGTGCTTGTCTTTATTAGAATTAACACAAGCCTGTTTTTCGCGGTATAT
GTGTTGATGTTTTATTCTCGTAGCGTAATGTGATGGACGGCGGGGTTTTC
CAAAGTGGATTCGTCTTTTCAACCTTCAGTGTCGTCAGGTCTCAAGTCTC
ATAACCCGTGCGCGCCTGTCATATAAACCTCAGGGTATCGTAGCAAGGGG
CTTCGCAGGCTCCTGTCCCCGAATGCGATGCATGTGTTGTCCGAGGGTGG
TGTGCGAGTGCGCGTGGTCACCTCTGGTGGACCCTAGCGTGGTTGAGACC
TTCAGACTCCGCGCGGAAGCATTGCTGACCCTCCATGTGAGAGAAGCCGA
TACATCTCCTTGACTATTCGTATTTTGTCGAAAGCATCCGAAGCTAGAGT
TTGTACACAGAAGATGTATATCCTCATTGACCTGATTCTACTTAAACGCT
GACGGTACTAATCGCGAAGTCTATGGTGGAACCAGGAAAAAGTCCACTTC
TAATATGTTGTGGCCGAAAAAGCGGCTTGGTACCATCGACAACGTTTTGG
TATTAAGCGAAGAAAACAACCTGCCCCAAAGGGGAAATGCCAAACAGCTT
TTCGTGTATTATAACACAACCGAGTGCCCGGGCTCTAGAAAGACCACCGT
CACTTTTGTTTTCTTGCCCGTCCCACCGTCTCCACACCGACGCAACCTCT
GAGTGATTTCCAGTGCTGTAATGAACGCGGACATGTGATGATCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig109:741211..742206+

>mRNA_F-serratus_M_contig109.831.1 ID=mRNA_F-serratus_M_contig109.831.1|Name=mRNA_F-serratus_M_contig109.831.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig109:741211..742206+ (Fucus serratus male)
GCGGCGCCGTTGCGTGTAACGAGAGATGGCACGGATAAACTTCGCCCTCC
CGCTCTTGACTCCTCCGACGGGGTGCTCCGAACGACTCTGTCGACGGTGC
CGGGGATGTGCATGGCGTGCTTAACGGAATGCGAGGACACTCTAGGTTCA
GATTGGCTTCACCAGGAGATGTTTCCAGGCATTATCGGGAATATCGACAA
GACCTCGTGCACCGTTTCTGCGTGCATCTCTTGCCTCAAGACGTACTTCG
AGGCGGCGCCGTTGCGTGTAACGAGAGATGGCACGGATAAACTTCGCCCT
CCCGCTCTTGACTCCTCCGACGGGGTGCTCCGAACGACTCTGTCGACGGT
GCCGGGGATGTGCATGGCGTGCTTAACGGAATGCGAGGACACTCTAGGTT
CAGATTGGCTTCACCAGGAGATGTTTCCAGGCATTATCGGGAATATCGAC
AAGACCTCGTGCACCGTTTCTGCGTGCATCTCTTGCCTCAAGACGTACTT
CGAGGGTATCGTAGCAAGGGGCTTCGCAGGCTCCTGTCCCCGAATGCGAT
GCATGTGTTGTCCGAGGGTGGTGTGCGAGTGCGCGTGGTCACCTCTGGTG
GACCCTAGCGTGGTTGAGACCTTCAGACTCCGCGCGGAAGCATTGCTGAC
CCTCCATGGTATCGTAGCAAGGGGCTTCGCAGGCTCCTGTCCCCGAATGC
GATGCATGTGTTGTCCGAGGGTGGTGTGCGAGTGCGCGTGGTCACCTCTG
GTGGACCCTAGCGTGGTTGAGACCTTCAGACTCCGCGCGGAAGCATTGCT
GACCCTCCATTGCTGTAATGAACGCGGACATGTGATGATCGACTGCTGTA
ATGAACGCGGACATGTGATGATCGAC
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