mRNA_F-serratus_M_contig109.825.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig109.825.1
Unique NamemRNA_F-serratus_M_contig109.825.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig109.825.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.010e-29
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 DLWTRPRKHLMSVGRAGVKPSHVRSLHELVEAHTLVKVKVNVPNADYAEIGLQLCGR--LSVEGSEGRGAFDTASSSAGVSVVTSRAKQNMILFAKTEFLGAVADGRDS 321
            +LW R +K L+SVG+ G+KPSHVRSL+ L+ AHTLVKVKVN+PNAD  E+GL+L G+  L++ G +G    D AS + GVSVVT    Q +ILFA TEFL + A G  S
Sbjct:   24 ELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLALGGGDG----DEASPAVGVSVVTVNPNQKVILFANTEFLASQARGETS 128
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BLAST of mRNA_F-serratus_M_contig109.825.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.680e-28
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    1 DLWTRPRKHLMSVGRAGVKPSHVRSLHELVEAHTLVKVKVNVPNADYAEIGLQLCGRLSVEGSEGRGAFDTASSSAGVSVVTSRAKQNMILFAKTEFLGAVADG 312
            +LW R +K L+SVG+ G+KPSHVRSL+ L+ AHTLVKVKVN+PNAD  E+GL+L G+  ++   G G  D AS + GVSVVT    Q +ILFA T+FL + A G
Sbjct:  101 ELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGGLKSGGGDG--DEASRAVGVSVVTVNPNQKVILFANTDFLASQARG 202
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BLAST of mRNA_F-serratus_M_contig109.825.1 vs. uniprot
Match: A0A835YHR7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHR7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.290e-9
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 DLWTRPRKHLMSVGRAGVKPSHVRSLHELVEAHTLVKVKVNVPNADYAE 147
            +LW +P+K L+ +G+ GV  SHVRSL +LV+ HT+V+VKVN   A Y +
Sbjct:   67 ELWRKPKKELLKIGQGGVTASHVRSLTDLVQHHTIVRVKVNTKGASYED 115
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig109.825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6K1_ECTSI1.010e-2955.96CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE4.680e-2855.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHR7_9STRA4.290e-951.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig109contigF-serratus_M_contig109:308102..309111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding, CRM domain
Ec32 orthologEc-05_006480.1
Exons3
Model size339
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig109.825.1prot_F-serratus_M_contig109.825.1Fucus serratus malepolypeptideF-serratus_M_contig109 308102..309081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.9536877-CDS-F-serratus_M_contig109:308101..3082391622928944.9536877-CDS-F-serratus_M_contig109:308101..308239Fucus serratus maleCDSF-serratus_M_contig109 308102..308239 -
1690962639.5345871-CDS-F-serratus_M_contig109:308101..3082391690962639.5345871-CDS-F-serratus_M_contig109:308101..308239Fucus serratus maleCDSF-serratus_M_contig109 308102..308239 -
1622928944.9676292-CDS-F-serratus_M_contig109:308275..3083591622928944.9676292-CDS-F-serratus_M_contig109:308275..308359Fucus serratus maleCDSF-serratus_M_contig109 308276..308359 -
1690962639.5455265-CDS-F-serratus_M_contig109:308275..3083591690962639.5455265-CDS-F-serratus_M_contig109:308275..308359Fucus serratus maleCDSF-serratus_M_contig109 308276..308359 -
1622928944.979651-CDS-F-serratus_M_contig109:308994..3090811622928944.979651-CDS-F-serratus_M_contig109:308994..309081Fucus serratus maleCDSF-serratus_M_contig109 308995..309081 -
1690962639.5543928-CDS-F-serratus_M_contig109:308994..3090811690962639.5543928-CDS-F-serratus_M_contig109:308994..309081Fucus serratus maleCDSF-serratus_M_contig109 308995..309081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.995512-UTR-F-serratus_M_contig109:309081..3091111622928944.995512-UTR-F-serratus_M_contig109:309081..309111Fucus serratus maleUTRF-serratus_M_contig109 309082..309111 -
1690962639.5634046-UTR-F-serratus_M_contig109:309081..3091111690962639.5634046-UTR-F-serratus_M_contig109:309081..309111Fucus serratus maleUTRF-serratus_M_contig109 309082..309111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig109.825.1

>prot_F-serratus_M_contig109.825.1 ID=prot_F-serratus_M_contig109.825.1|Name=mRNA_F-serratus_M_contig109.825.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MSVGRAGVKPSHVRSLHELVEAHTLVKVKVNVPNADYAEIGLQLCGRLSV
EGSEGRGAFDTASSSAGVSVVTSRAKQNMILFAKTEFLGAVADGRDSSSK
SL*
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mRNA from alignment at F-serratus_M_contig109:308102..309111-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig109.825.1 ID=mRNA_F-serratus_M_contig109.825.1|Name=mRNA_F-serratus_M_contig109.825.1|organism=Fucus serratus male|type=mRNA|length=1010bp|location=Sequence derived from alignment at F-serratus_M_contig109:308102..309111- (Fucus serratus male)
GACCTATGGACGAGGCCAAGAAAACACCTCATGAGCGTGGGAAGAGCTGG
GGTCAAGCCGAGTCACGTCCGCTCTCTCCACGAGCTTGTCGAAGCCCACA
CCCTGGTCAAAGTCAAGGTGGGTTTTCCGCGGTTTCAATGCAGATTTATT
GCTAGCTTTCTGGCGTTCTCGACAAGGGGTACTCTAAGCTGGTGGGCAGA
TATAAGTACCAGTATAGCACAAATAAGAATGTTCCCGATCCAAGATCCGG
CCTTAGCGTAGAACCTGGCCTAGCCCGATGTAAGGTCGCTTTAGTGCATA
GATGGAGCTACTGTTGAAACCGCCGCAGCTCGATCTTGGTACGTCCGAAT
GTTTGGAAGAATAAAGGACGATATAGATATGCCTGAACAAATGGCCAAGC
AGAGTGATACTCTGAGACGTGGATGGGGTTTGCTCGGCGGGCTCAGTGAG
AGCTCTGGGGGGAAGTTGCAGCGGTCGATCGCGGCGCAGGGTATGGTTTT
ACGGACACACGCCCTCTGTTGTGCCGGAAGCGGAAAAAAAACGGCCTTAG
ATCGAAAAAGGTATTTTAGGTAAAGCGAAAAACGGCCTTAGATCGGTTAC
ACCTTACTGCGTCCATTTCATGGAAAAGTACATTGCCAAAGCAAGTCATC
GCATCCGGCCAGGTTAGAAGGAAAACTCATGCCAGCCGACTTCGCTCAAG
TTACCGCTCGTGACGTCCTGTCTCGTCGATGTTCAACACCACGATCGTAC
AGGTCAACGTGCCCAACGCCGATTACGCCGAGATCGGCCTGCAGCTCTGC
GGGAGGCTGAGCGTGGAAGGTTCCGAGGGTCGGGGCGTGGACGCAGAGGG
CCCCGACCAGGATTTGAGTGAGGCGTTTGATACCGCTAGCTCGTCGGCGG
GGGTTTCTGTAGTTACGAGCCGCGCAAAGCAGAACATGATCCTTTTCGCC
AAGACCGAATTTTTAGGCGCGGTCGCGGATGGAAGAGATTCCTCGTCCAA
GTCATTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig109:308102..309111-

>mRNA_F-serratus_M_contig109.825.1 ID=mRNA_F-serratus_M_contig109.825.1|Name=mRNA_F-serratus_M_contig109.825.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig109:308102..309111- (Fucus serratus male)
ATGAGCGTGGGAAGAGCTGGGGTCAAGCCGAGTCACGTCCGCTCTCTCCA
CGAGCTTGTCGAAGCCCACACCCTGGTCAAAGTCAAGATGAGCGTGGGAA
GAGCTGGGGTCAAGCCGAGTCACGTCCGCTCTCTCCACGAGCTTGTCGAA
GCCCACACCCTGGTCAAAGTCAAGGTCAACGTGCCCAACGCCGATTACGC
CGAGATCGGCCTGCAGCTCTGCGGGAGGCTGAGCGTGGAAGGTTCCGAGG
GTCGGGGCGTCAACGTGCCCAACGCCGATTACGCCGAGATCGGCCTGCAG
CTCTGCGGGAGGCTGAGCGTGGAAGGTTCCGAGGGTCGGGGCGCGTTTGA
TACCGCTAGCTCGTCGGCGGGGGTTTCTGTAGTTACGAGCCGCGCAAAGC
AGAACATGATCCTTTTCGCCAAGACCGAATTTTTAGGCGCGGTCGCGGAT
GGAAGAGATTCCTCGTCCAAGTCATTATGAGCGTTTGATACCGCTAGCTC
GTCGGCGGGGGTTTCTGTAGTTACGAGCCGCGCAAAGCAGAACATGATCC
TTTTCGCCAAGACCGAATTTTTAGGCGCGGTCGCGGATGGAAGAGATTCC
TCGTCCAAGTCATTATGA
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